CmaCh14G012760 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G012760
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	60S ribosomal protein L28-2-like
Location	Cma_Chr14: 10097194 .. 10099714 (-)
RNA-Seq Expression	CmaCh14G012760
Synteny	CmaCh14G012760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTATCACCTGAGGAATGAAGATGGTAATGCCTAATGTGGAGAACGTTTCAATAATTTAGGATCCGTTTGATAACAATTTTGTTTTTGATTGATCGTATTATCATCTTAGGTTATTTTTATGTTTGATAAAAACAATGGCCTTCTCATACTCGACGTATATTATTATAACAAACATATATTATTATGAAGTGTATTGAGGCATACAATTTTTTTTAAAATTTTTTTAATTCAATTGACATAAAATATCTGAATAAAAGTTAAAAAGCTTTCTTCAAATTTTTTGTGATTTTAACATTTTTATTTTGGTGATTTTTATTCAATATATAAATAATTGTATTTTTCAAGTTATTCAATTTTAATATTTTTTCTTTTACAAAAAGGTAAATATTTGAATAATATTGTATCTATTTGGTCCTTTAAACTATAATCTAAAAATAAATAAAAATAATAAAATGAAAAATAAACTTTAGATTTATATTAATTAAATTTTTAATAAGAAATGAAAATATGATGGATGCCCTAAACCTAAGCCCATTGAAGTTCCGGGTAATTAGGGTTTAGTATAAAAGGTACGAAACTCCTTGCTCATTACGCCCCATTTTTGCCCATCGGAGCATCTGTGAGACAAAACCCTAAAACCGATCAGGTCTTGTATTTCTCTCAACGATTTAGTTTCAATGTTTTTTTTTTGTTGTGTTCTCGCGCATATGTATGTTTTACTCAAGCTAGACTCACTTCGAAGGTTTTTCTTTGATATGTTTCTATCGCGTTGCAGGCAGAGAAGGAGATGGCGGCGGTTTCAGGACAACTGGTTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGCGTTCAGTTCAGCAAAGAGTCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTAAGTCATCTTAAATTCTCTGATTAATGAGCCATTTTTGTTCCATTTTAAAGGAAATGCTAGAGGACTAAGTTTGAAGAATTTTGCTTGATTGTCGAGTTGATTTAGAGGTAGGGTCACGAGTATATTATGTCGTCATTTGGAGGTTTGTGTATGATTGTTTGGTACTATTTAGTTGTGGAAATTTAAATAAATTGAGTGTTGTCTCCTTTGATTACCTGAAGTACTGCAAATGACCGAAAATATGCTTGGTTTATTGTTTGGAATCTGGATCCTCTGGCCAATTGGCGGTTATCTGGATAACTGTTTGTATGCGCGTCATGTATTCTGGATTTTGGCTGCAGAGGGGCCAGCATACTTGATTCATGCTATGTAAGCAATGTGAAATTGTTTCAATTATCGTCCCGGTTATTACAGCATCCGCGGTGCATTTAAATAGAAATAGGTGAATGGTCATTGTGCCTGTTCAACTAATGGTGTGGTTATTTAATTTGTTCTTTTGTTTATGTGTTCGAGACATTATTCAGTTCTTGGGTTTACATGCTTGACATTTTGATTCTACAGTTTCCTTGACTAAATCCTCCCATTGCTAATTTGTGAGCACTAGAAAAAATATGCTCGAGTATTTGAATGCTTGGTTTTGTTCTTTCTTTGAACAGTTCGGTTTATTATCTTACATATTTGATGTTGAGAAACATTTGAATTTGTTCTTGAAAGCTATTAGTTCATTAGTAGTGGTGAGAGAAGTTTCACTTTTTTCTTTTCTTTGTTTTTTTCTGTTTGATGATAACATTATAAATATTGAGTTCAGTTTATGCATAGAGGTTCATTATGATTCTTTTGTTTTAGGCTTGGCCAACAAGAAAACAGTTACAATTCAACCTGGAGGCAAAGATCAGTCCGTTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATTGCTTCATAAGTCTCTGTTGAAGAAAGAGTTCAGTAAGATGGCCAAAGCTGTAACAAACCAGGTACTTTAAGTTCAGGCATTTTAGTAGCGAACTTAATTATCTTGAGTACTTTTTCCTATCAAATGTAGTTTATGCAGTTGGAACAGTTGCATTAACAACCCCTCCACACTCCCCAATGATATGCAGGTTGCAGATAACTACTACAGGCCAGATCTGAAAAAGGCTGCCCTAGCAAGATTGAGTGCTGTGAACAGGAGCCTAAAGGTTGCCAAGTCCGGGGTCAAGAAGAGGAACAGACAAGCGTTGAAATCAGGTGGAAGGAAGTAGGTAGTGAGAATTAAGAGAATGAAAAAGAGATGTTGCGTTTGCCATTGTGTTTTTTGTTGGAATGCCAACTTAGTGCACAGTTTTGAATCTGAAGAGTAGTCTGGAGACAGATGTTTTGCTATGTTTTGGATTATTATTATATGCTTATTTTCATGCTGTGGTGAACTTGTCAGGTAACCTTGCGACTTTGTTTTGGTTATATGTTATTTTAATTGCAGTTGAAAATTTCTAGGATATTTCATGGTCCGGTAGGGAAAATAAGTACTTGGAAAAACCCTAAATCTTATGTTTTGTTATGTTT

mRNA sequence

ATGGATTATCACCTGAGGAATGAAGATGGTACGAAACTCCTTGCTCATTACGCCCCATTTTTGCCCATCGGAGCATCTGTGAGACAAAACCCTAAAACCGATCAGGCAGAGAAGGAGATGGCGGCGGTTTCAGGACAACTGGTTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGCGTTCAGTTCAGCAAAGAGTCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGCTTGGCCAACAAGAAAACAGTTACAATTCAACCTGGAGGCAAAGATCAGTCCGTTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATTGCTTCATAAGTCTCTGTTGAAGAAAGAGTTCAGTAAGATGGCCAAAGCTGTAACAAACCAGGTTGCAGATAACTACTACAGGCCAGATCTGAAAAAGGCTGCCCTAGCAAGATTGAGTGCTGTGAACAGGAGCCTAAAGGTTGCCAAGTCCGGGGTCAAGAAGAGGAACAGACAAGCGTTGAAATCAGGTGGAAGGAAGTAGGTAGTGAGAATTAAGAGAATGAAAAAGAGATGTTGCGTTTGCCATTGTGTTTTTTGTTGGAATGCCAACTTAGTGCACAGTTTTGAATCTGAAGAGTAGTCTGGAGACAGATGTTTTGCTATGTTTTGGATTATTATTATATGCTTATTTTCATGCTGTGGTGAACTTGTCAGGTAACCTTGCGACTTTGTTTTGGTTATATGTTATTTTAATTGCAGTTGAAAATTTCTAGGATATTTCATGGTCCGGTAGGGAAAATAAGTACTTGGAAAAACCCTAAATCTTATGTTTTGTTATGTTT

Coding sequence (CDS)

ATGGATTATCACCTGAGGAATGAAGATGGTACGAAACTCCTTGCTCATTACGCCCCATTTTTGCCCATCGGAGCATCTGTGAGACAAAACCCTAAAACCGATCAGGCAGAGAAGGAGATGGCGGCGGTTTCAGGACAACTGGTTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGCGTTCAGTTCAGCAAAGAGTCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGCTTGGCCAACAAGAAAACAGTTACAATTCAACCTGGAGGCAAAGATCAGTCCGTTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATTGCTTCATAAGTCTCTGTTGAAGAAAGAGTTCAGTAAGATGGCCAAAGCTGTAACAAACCAGGTTGCAGATAACTACTACAGGCCAGATCTGAAAAAGGCTGCCCTAGCAAGATTGAGTGCTGTGAACAGGAGCCTAAAGGTTGCCAAGTCCGGGGTCAAGAAGAGGAACAGACAAGCGTTGAAATCAGGTGGAAGGAAGTAG

Protein sequence

MDYHLRNEDGTKLLAHYAPFLPIGASVRQNPKTDQAEKEMAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALKSGGRK

Homology

[Close]

BLAST of CmaCh14G012760 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.9e-54
Identity = 109/143 (76.22%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MA V GQL+WEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
             GKDQ V+L TTK+K+QNKP   ++KS+LKKEFS+M+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQA 183
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmaCh14G012760 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-52
Identity = 106/143 (74.13%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MA V GQL+WEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
              KDQ+V+LATTK+KKQNKP   ++KS+LKKEF +M+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQA 183
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmaCh14G012760 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 42  AVSGQLVWEIVKRNNSFLVK--EFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 101
           +VS  L+W++++ NN FLVK  EFG    G+QF++E  N+   N+ + SGL N K V +Q
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 61

Query: 102 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFS-KMAKAVTNQVADNYYRPDLKKAAL 161
                  VL+  T  K   KP+ L  K ++    S K  K++  ++    YR DL K ++
Sbjct: 62  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 121

Query: 162 ARLSAVNRSLKVAKS 174
           AR SA+  S +  K+
Sbjct: 122 ARASAILSSQRPKKT 132

[Close]

BLAST of CmaCh14G012760 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-11
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 43  VSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGG 102
           +S  L W I++ NN+FLVK   +      FSKE NN+ NLNSY+++GL  KK V +    
Sbjct: 1   MSSHLNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENP 60

Query: 103 KDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAK----AVTNQVADNYYRPDLKKAAL 162
             +   +   K+K  NKP+    K+ ++++F   A+     V   +  N+YR DL KA L
Sbjct: 61  DRKGFTVVYKKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATL 120

Query: 163 ARLSAVNRSLKVAKS 174
            R SA+ RS +  K+
Sbjct: 121 RRASAILRSQRPIKA 128

[Close]

BLAST of CmaCh14G012760 vs. ExPASy Swiss-Prot
Match: P46779 (60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 44/143 (30.77%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 43  VSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGG 102
           +S  L W +V+  +SFL+K   +      +S E NNL   NS++++GL ++KTV ++P  
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAA 60

Query: 103 KDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALARLS 162
             + V++   +   Q KP++   ++ + K       ++ + +  N YRPDL+ AA+ R S
Sbjct: 61  DGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRAS 120

Query: 163 AVNRSLKVAKSGVKKRNRQALKS 186
           A+ RS K     VK++  +  KS
Sbjct: 121 AILRSQKPVM--VKRKRTRPTKS 136

[Close]

BLAST of CmaCh14G012760 vs. ExPASy TrEMBL
Match: A0A6J1IS47 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111480021 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.2e-72
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
           PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQALKSGGRK 190
           RLSAVNRSLKVAKSGVKKRNRQALKSGGRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSGGRK 150

[Close]

BLAST of CmaCh14G012760 vs. ExPASy TrEMBL
Match: A0A6J1GW79 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111457983 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.2e-72
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
           PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQALKSGGRK 190
           RLSAVNRSLKVAKSGVKKRNRQALKSGGRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSGGRK 150

[Close]

BLAST of CmaCh14G012760 vs. ExPASy TrEMBL
Match: A0A1S3BIE3 (60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.1e-67
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MAAV GQL+WEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
           PGGKDQS+LLATTKSKKQNKPSSLLHKSL+KKEF +MAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQALKS 186
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of CmaCh14G012760 vs. ExPASy TrEMBL
Match: A0A5D3BXS0 (60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001760 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.1e-67
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MAAV GQL+WEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
           PGGKDQS+LLATTKSKKQNKPSSLLHKSL+KKEF +MAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQALKS 186
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of CmaCh14G012760 vs. ExPASy TrEMBL
Match: A0A6J1K7P5 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.3e-67
Identity = 139/150 (92.67%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MAAV GQL+WEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
           PGGKDQS+L ATTKSKKQNKPSSLLHKSL+KKEF +MAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQALKSGGRK 190
           RLSAVNRSLKVAKSGVKKRNRQALKS GRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of CmaCh14G012760 vs. NCBI nr
Match: KAG6581862.1 (hypothetical protein SDJN03_21864, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 10   GTKLLAHYAPFLPIGASVRQNPKTDQAEKEMAAVSGQLVWEIVKRNNSFLVKEFGRGTAG 69
            GTKLL HYAPFLPIGASVRQNPKTDQAEKEMAAVSGQLVWEIVKRNNSFLVKEFGRGTAG
Sbjct: 1913 GTKLLTHYAPFLPIGASVRQNPKTDQAEKEMAAVSGQLVWEIVKRNNSFLVKEFGRGTAG 1972

Query: 70   VQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQSVLLATTKSKKQNKPSSLLHKSLL 129
            VQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQSVLLATTKSKKQNKPSSLLHKSLL
Sbjct: 1973 VQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQSVLLATTKSKKQNKPSSLLHKSLL 2032

Query: 130  KKEFSKMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALKSGGRK 189
            KKEFSKMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALKSGGRK
Sbjct: 2033 KKEFSKMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALKSGGRK 2092

[Close]

BLAST of CmaCh14G012760 vs. NCBI nr
Match: XP_022956223.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022980747.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023529098.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7018296.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-71
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
           PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQALKSGGRK 190
           RLSAVNRSLKVAKSGVKKRNRQALKSGGRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSGGRK 150

[Close]

BLAST of CmaCh14G012760 vs. NCBI nr
Match: KAG6606729.1 (hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 277.7 bits (709), Expect = 7.4e-71
Identity = 151/181 (83.43%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 10   GTKLLAHYAPFLPIGASVRQNPKTDQAEKE-MAAVSGQLVWEIVKRNNSFLVKEFGRGTA 69
            G  L     P LPI  S   NPK +Q +K+ MAAV GQL+WEIVKRNNSFLVKEFGRGTA
Sbjct: 1434 GNSLFFIARPILPIRVS-ETNPKVNQGDKKIMAAVPGQLIWEIVKRNNSFLVKEFGRGTA 1493

Query: 70   GVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQSVLLATTKSKKQNKPSSLLHKSL 129
            GVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQS+L ATTKSKKQNKPSSLLHKSL
Sbjct: 1494 GVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQSILFATTKSKKQNKPSSLLHKSL 1553

Query: 130  LKKEFSKMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALKSGGR 189
            +KKEF +MAKAVTNQV DNYYRPDLK+ ALARLSAVNRSLKVAKSGVKKRNRQALKS GR
Sbjct: 1554 MKKEFRRMAKAVTNQVGDNYYRPDLKRDALARLSAVNRSLKVAKSGVKKRNRQALKSRGR 1613

[Close]

BLAST of CmaCh14G012760 vs. NCBI nr
Match: XP_038886678.1 (60S ribosomal protein L28-2-like [Benincasa hispida])

HSP 1 Score: 267.7 bits (683), Expect = 7.6e-68
Identity = 142/150 (94.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MAAV GQL+WEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
           PGGKDQS+LLATTKSKKQNKPSSLLHKSL+KKEF +MAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQALKSGGRK 190
           RLSAVNRSLKVAKSGVKKRNRQALKS  RK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSNVRK 150

[Close]

BLAST of CmaCh14G012760 vs. NCBI nr
Match: XP_008447584.1 (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447586.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >KAA0061117.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa] >TYK03788.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 264.6 bits (675), Expect = 6.5e-67
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MAAV GQL+WEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
           PGGKDQS+LLATTKSKKQNKPSSLLHKSL+KKEF +MAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQALKS 186
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of CmaCh14G012760 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-55
Identity = 109/143 (76.22%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MA V GQL+WEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
             GKDQ V+L TTK+K+QNKP   ++KS+LKKEFS+M+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQA 183
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmaCh14G012760 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-55
Identity = 109/143 (76.22%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MA V GQL+WEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
             GKDQ V+L TTK+K+QNKP   ++KS+LKKEFS+M+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQA 183
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmaCh14G012760 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 106/143 (74.13%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MA V GQL+WEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
              KDQ+V+LATTK+KKQNKP   ++KS+LKKEF +M+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQA 183
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmaCh14G012760 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 106/143 (74.13%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MA V GQL+WEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
              KDQ+V+LATTK+KKQNKP   ++KS+LKKEF +M+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQA 183
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmaCh14G012760 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 106/143 (74.13%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 40  MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 99
           MA V GQL+WEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 100 PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 159
              KDQ+V+LATTK+KKQNKP   ++KS+LKKEF +M+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 160 RLSAVNRSLKVAKSGVKKRNRQA 183
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of CmaCh14G012760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	2.9e-54	76.22	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	2.7e-52	74.13	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
O14069	1.6e-12	35.56	Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
Q962T2	1.8e-11	36.30	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
P46779	1.2e-10	30.77	60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3	[more]

BLAST of CmaCh14G012760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IS47	7.2e-72	100.00	60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111480021 PE=...	[more]
A0A6J1GW79	7.2e-72	100.00	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111457983 P...	[more]
A0A1S3BIE3	3.1e-67	95.21	60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV...	[more]
A0A5D3BXS0	3.1e-67	95.21	60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1K7P5	5.3e-67	92.67	60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=...	[more]

BLAST of CmaCh14G012760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581862.1	1.2e-89	99.44	hypothetical protein SDJN03_21864, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022956223.1	1.5e-71	100.00	60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022980747.1 60S riboso...	[more]
KAG6606729.1	7.4e-71	83.43	hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038886678.1	7.6e-68	94.67	60S ribosomal protein L28-2-like [Benincasa hispida]	[more]
XP_008447584.1	6.5e-67	95.21	PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDI...	[more]

BLAST of CmaCh14G012760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	2.1e-55	76.22	Ribosomal L28e protein family	[more]
AT4G29410.2	2.1e-55	76.22	Ribosomal L28e protein family	[more]
AT2G19730.1	1.9e-53	74.13	Ribosomal L28e protein family	[more]
AT2G19730.2	1.9e-53	74.13	Ribosomal L28e protein family	[more]
AT2G19730.3	1.9e-53	74.13	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.390.110		coord: 44..172 e-value: 2.8E-43 score: 149.4
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 40..189
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 47..167 e-value: 1.5E-34 score: 119.2
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 40..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G012760.1	CmaCh14G012760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome