CmaCh14G011540 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G011540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	Cma_Chr14: 9115736 .. 9116569 (-)
RNA-Seq Expression	CmaCh14G011540
Synteny	CmaCh14G011540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCTTTGTGCATATATAATGCATTAACAAACCATCCAATCACACACACAAATTTGTTCAACGATTTCTTCGAATGGCGCGTTGGGTGAAACCAGAGGTCAGCCCCCCAAACCTTCCATTTTTCTTTTCTTTCAACAATAACTCTTGTTTTTTCTTTTCTAAGTTCTCTTCCAATGTAAGTTATGGTTAAATGTTTCCATAAATGGGTTAATTATATGATTTGAATATGGAAGGTTTATCCGCTAATGGCAGCCATGGGGTTTGTGACCACTATGTGCGTGTTTCAGCTTACCAGAAATATTTTGATCAATCCTGACGTCAGGTACCTCCTATTTTATTATTCGGGTGTGGAAACCTCTCCACTAGTAGAAGCGTTCTTAAAAAACAATATAGTCTATATGTTTAACAAATAAGATAATGAAATCTAAATTTTTGTGATAATTTTTTTTAACGAATGTAATTTATTATTATTGGTAGGGTGAATAAAGAGCACCGTAGAATGGGAGTGTTGGAGAATGAAGAGGAAGGAGAGAAGTACGCAGAGCACAGCCTCCGGCGGTTCCTCCGGACACGGCCACCTGAAATCATGCCCACCATTAATCGCTTTTTCTCTCAAGACAAATAATTTAAATCAACATTTTCCTTTAAATTCTTTTTTTTTTTTAAATTTTATTCTCTACTTTTTTATTTGTTTCTATGAATGTAAGATGGCTTTATCTTTAACGCACCACTTCGTTGTCTTAATGATGTTGGATAATAACACCAATACCTTTGTTCTTGTGGTTAAAGCTTTATTTAATATTTGATATTATAAAATGAATTTGAGAAAAAA

mRNA sequence

CTTTTCTTTGTGCATATATAATGCATTAACAAACCATCCAATCACACACACAAATTTGTTCAACGATTTCTTCGAATGGCGCGTTGGGTGAAACCAGAGGTTTATCCGCTAATGGCAGCCATGGGGTTTGTGACCACTATGTGCGTGTTTCAGCTTACCAGAAATATTTTGATCAATCCTGACGTCAGGGTGAATAAAGAGCACCGTAGAATGGGAGTGTTGGAGAATGAAGAGGAAGGAGAGAAGTACGCAGAGCACAGCCTCCGGCGGTTCCTCCGGACACGGCCACCTGAAATCATGCCCACCATTAATCGCTTTTTCTCTCAAGACAAATAATTTAAATCAACATTTTCCTTTAAATTCTTTTTTTTTTTTAAATTTTATTCTCTACTTTTTTATTTGTTTCTATGAATGTAAGATGGCTTTATCTTTAACGCACCACTTCGTTGTCTTAATGATGTTGGATAATAACACCAATACCTTTGTTCTTGTGGTTAAAGCTTTATTTAATATTTGATATTATAAAATGAATTTGAGAAAAAA

Coding sequence (CDS)

ATGGCGCGTTGGGTGAAACCAGAGGTTTATCCGCTAATGGCAGCCATGGGGTTTGTGACCACTATGTGCGTGTTTCAGCTTACCAGAAATATTTTGATCAATCCTGACGTCAGGGTGAATAAAGAGCACCGTAGAATGGGAGTGTTGGAGAATGAAGAGGAAGGAGAGAAGTACGCAGAGCACAGCCTCCGGCGGTTCCTCCGGACACGGCCACCTGAAATCATGCCCACCATTAATCGCTTTTTCTCTCAAGACAAATAA

Protein sequence

MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAEHSLRRFLRTRPPEIMPTINRFFSQDK

Homology

[Close]

BLAST of CmaCh14G011540 vs. ExPASy TrEMBL
Match: A0A6J1IXF3 (uncharacterized protein LOC111480034 OS=Cucurbita maxima OX=3661 GN=LOC111480034 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.3e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60
          MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 87
          HSLRRFLRTRPPEIMPTINRFFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 86

[Close]

BLAST of CmaCh14G011540 vs. ExPASy TrEMBL
Match: A0A6J1GXR5 (uncharacterized protein LOC111457808 OS=Cucurbita moschata OX=3662 GN=LOC111457808 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.9e-40
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60
          MARWVKPEVYPLMAAMGFVTT+CVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTLCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 87
          HSLRRFLRTRPPEIMP INRFFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPAINRFFSQDK 86

[Close]

BLAST of CmaCh14G011540 vs. ExPASy TrEMBL
Match: A0A1S3CLU5 (uncharacterized protein LOC103502424 OS=Cucumis melo OX=3656 GN=LOC103502424 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.4e-38
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60
          M RW+KPEVYPL+AAMGFVT+MCVFQLTRNILINPDVRVNK HRRMGVLENEEEGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 87
          HSLRRFLRTRPPEIMPTINR+FSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86

[Close]

BLAST of CmaCh14G011540 vs. ExPASy TrEMBL
Match: A0A6J1DLE5 (uncharacterized protein LOC111022208 OS=Momordica charantia OX=3673 GN=LOC111022208 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.2e-35
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60
          M RW+KPEVYPL+AAMGFVT+MCVFQLTRNIL+NPDVRVNK  R MGVLEN EEGEKYAE
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 87
          H LRRFLRTRPPEIMPTIN FFSQDK
Sbjct: 61 HRLRRFLRTRPPEIMPTINHFFSQDK 86

[Close]

BLAST of CmaCh14G011540 vs. ExPASy TrEMBL
Match: A0A2P5B296 (NADH-ubiquinone reductase complex 1 MLRQ subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_278080 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-34
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60
          M RW+KPEVYPLMAAM FVT+MCVFQLTRN+ +NPDVRVNK +R MGVL+N+EEGEKYAE
Sbjct: 1  MGRWIKPEVYPLMAAMTFVTSMCVFQLTRNVFLNPDVRVNKANRSMGVLDNKEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 87
          HSLR+FLRTRPPEIMPTIN FFS+DK
Sbjct: 61 HSLRKFLRTRPPEIMPTINHFFSEDK 86

[Close]

BLAST of CmaCh14G011540 vs. NCBI nr
Match: XP_022980760.1 (uncharacterized protein LOC111480034 [Cucurbita maxima])

HSP 1 Score: 177.6 bits (449), Expect = 4.7e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60
          MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 87
          HSLRRFLRTRPPEIMPTINRFFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 86

[Close]

BLAST of CmaCh14G011540 vs. NCBI nr
Match: XP_022955974.1 (uncharacterized protein LOC111457808 [Cucurbita moschata])

HSP 1 Score: 174.5 bits (441), Expect = 4.0e-40
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60
          MARWVKPEVYPLMAAMGFVTT+CVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTLCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 87
          HSLRRFLRTRPPEIMP INRFFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPAINRFFSQDK 86

[Close]

BLAST of CmaCh14G011540 vs. NCBI nr
Match: XP_023528505.1 (uncharacterized protein LOC111791411 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 1.5e-39
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60
          MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLEN EEGEKYA+
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENGEEGEKYAQ 60

Query: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 87
          H+LRRFLRTRPPEIMPTINRFFSQDK
Sbjct: 61 HTLRRFLRTRPPEIMPTINRFFSQDK 86

[Close]

BLAST of CmaCh14G011540 vs. NCBI nr
Match: XP_008464582.1 (PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 4.9e-38
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60
          M RW+KPEVYPL+AAMGFVT+MCVFQLTRNILINPDVRVNK HRRMGVLENEEEGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 87
          HSLRRFLRTRPPEIMPTINR+FSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86

[Close]

BLAST of CmaCh14G011540 vs. NCBI nr
Match: XP_038883437.1 (uncharacterized protein LOC120074394 [Benincasa hispida])

HSP 1 Score: 163.7 bits (413), Expect = 7.1e-37
Identity = 76/86 (88.37%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60
          M RW+KPEVYPL+AAMGFVT+MCVFQLTRNI+INPDVRVNK HR+MGVLENEEEGEKY+E
Sbjct: 1  MGRWIKPEVYPLLAAMGFVTSMCVFQLTRNIMINPDVRVNKAHRKMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 87
          HSLRRFLRTRPPEIMP IN FFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPNINHFFSQDK 86

[Close]

BLAST of CmaCh14G011540 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-33
Identity = 59/85 (69.41%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60
          M RWV+PEVYPL+ AMGFVT+M VFQLTRN  +NPD R+NKEHR+MG+LEN++EGEKYA+
Sbjct: 1  MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query: 61 HSLRRFLRTRPPEIMPTINRFFSQD 86
          H+ R++LRTR P++MP++NRFFSQ+
Sbjct: 61 HNFRKYLRTRQPQVMPSLNRFFSQE 85

[Close]

BLAST of CmaCh14G011540 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 100.5 bits (249), Expect = 6.8e-22
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 2  ARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAEH 61
          +RW++PEVYPL AA G    +C F L RNI  NP+VR  KE+R  G+L+N  EGEKY E+
Sbjct: 3  SRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKEN 62

Query: 62 SLRRFLRTRPPEIMPTINRFFS 84
           LR+F+R + PEIMP +N+FF+
Sbjct: 63 FLRKFVRNKKPEIMPGLNKFFT 84

The following BLAST results are available for this feature:

BLAST of CmaCh14G011540 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G011540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IXF3	2.3e-41	100.00	uncharacterized protein LOC111480034 OS=Cucurbita maxima OX=3661 GN=LOC111480034...	[more]
A0A6J1GXR5	1.9e-40	97.67	uncharacterized protein LOC111457808 OS=Cucurbita moschata OX=3662 GN=LOC1114578...	[more]
A0A1S3CLU5	2.4e-38	91.86	uncharacterized protein LOC103502424 OS=Cucumis melo OX=3656 GN=LOC103502424 PE=...	[more]
A0A6J1DLE5	3.2e-35	87.21	uncharacterized protein LOC111022208 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A2P5B296	2.7e-34	82.56	NADH-ubiquinone reductase complex 1 MLRQ subunit OS=Parasponia andersonii OX=347...	[more]

BLAST of CmaCh14G011540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022980760.1	4.7e-41	100.00	uncharacterized protein LOC111480034 [Cucurbita maxima]	[more]
XP_022955974.1	4.0e-40	97.67	uncharacterized protein LOC111457808 [Cucurbita moschata]	[more]
XP_023528505.1	1.5e-39	96.51	uncharacterized protein LOC111791411 [Cucurbita pepo subsp. pepo]	[more]
XP_008464582.1	4.9e-38	91.86	PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo]	[more]
XP_038883437.1	7.1e-37	88.37	uncharacterized protein LOC120074394 [Benincasa hispida]	[more]

BLAST of CmaCh14G011540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29970.1	1.3e-33	69.41	B12D protein	[more]
AT3G48140.1	6.8e-22	54.88	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 6..73 e-value: 1.2E-25 score: 89.0
None	No IPR available	PANTHER	PTHR33417:SF19	SUBFAMILY NOT NAMED	coord: 1..86
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G011540.1	CmaCh14G011540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane