CmaCh14G011390 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G011390
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr14: 8827567 .. 8829503 (+)
RNA-Seq Expression	CmaCh14G011390
Synteny	CmaCh14G011390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAAACAAATTCAGATGGTGTTGGTTTACATGGTTATGCCATGGTTCTATGCATGTGAGTATATTCAAATTGCACATAAATACATTGAAATTCAGTCTCTTTATGGATAATCCTTTTCTGATCAGGTTTTTGCTTACATCAGGCAAACAAACTGCACATTGTGGGAAATATAATAATTGTGATGGAAGAATGTTTGGCGGAAGGATAGCACAGGGGAAGAATGAAGCTCAAGAAGTCAATTTTAAAGGAAGAAATTTGTGTAAGTTGGCTCTGGAATAATATTATTTTATTTGCAGCCAATTGGAGATTGTGTGGGAAGATATGAAAGGAGGAATCAGGTTGAGGAAGGTAAGCATTTCTATATCCACAAGAAAATATATTTTTATTGTCTTATTATAATAGATGACTCAAATAGCACTCTAATAAGAGCCAGATTAGAATATTAAATTACAAAACTTAGACTTGTTTACAACCATGACTTCTTATTTTAGTATATTTAGGAAGATTATACAGCCTGGTGTGTTATGGTATTGCGAATTCAAAAGGAAATAAAAACCCCTCTTGCTCTCTCATGGGGTTGGGTTAGACAAAACAAGTGAAAGTGCAAATGGAAAAGCCATTACAGGAAAGTACAGTAATCAACAAAACACTATCTTTTAAAATACTATATATTCTTATAAAAGGGGCCATTCATTGCCTTCTTCTTCCCCACTCAAATGGACACAACTTTATTTATTTATTTATTTTATCAATTTCATTGCTTGAACTAGAATATAAATGTGAAAGCTACTTGCTACTGAAGAAAAAAAAAAAAAGAAAAGAAAAAAAAGCCTATTATATGTTTGCTCTGTGTTTCTGCCTCTCTTTATTTTCACATTCAAATTTTACATTCGTTTAGCACAACAGAGACACGTACTTGCATGTCAGGATTGTGTACATGGTATACTTTTGATTCCTTGCACATTGAGTTCCATTTGGAACTGATAAAAAAGAGCTTGGCTTGGTCACTTCCATTGCAAGCTATGTTCAATGGTGTCACTTTGCACAGTAGCTTCAGTTGCCATTAGCATTTTCTCTCTTTAATGGTGTCACTTTGCATATAGAGGGATTGCAAAACTTTTCAATGTTGTAGACAATGGCCAACATTGGGATGTGTTTTCAAACAAGCAAAATAGGTCATTTTGGTCAAAATTTAAGCTTGGTGGGTGCATCATAGTCGCATTGTGGCGCTAAATTCATCAGGAGCAAGAAGAAAAATAAATTGGAGCTCTAAACCACTCAACTGAGTGGGGATATCATGTTTTAGTGGTGAGAATGGATTATTAGGAGTTAGTTGTATAGATTTTTCGCTTTTCATTATTGTAGTCTGACCATTAAATTGAGAGCTTGAAACCGAAACATTACCTTGTGAAAATGGCTCCAACACTTCTGAAAAATTATTCAATGAGACAGCAGCACTGTGACTGCTTTATAACGACCATTGGATGTAGATTTTAAAATCTACCTACCTCTAATAACTTCTCGATAAATTTGGAGATACTTTTATAGTTGCTCTCTCAATGATGAATGTTTTTCTCTCTAAATAATTCCTTTCACATTTCAGGGTTTGATCAGGTTGGGTGGGGCTTTATAGTCAACAATTTCATAAGACATACTTAGACCTCTCTTTCTTGTCTTCTGTTTGGTTACTCTCTCTCTCTCTCTCTCTCTCTCTTCCTTCTTTTTGTTGTTTGGGATACGAATGTACCCTTCGGCATGAAGAAAAGGTATATTTGTAGCTGAAGAGATGACCCAGTATTGTTCTTTGGTTGAATTGTAGCCTTGTACATTGTAGATAGCCGCTGGTGATTATCTTCCTGGTCAAGTATCAAGTTTGGCTTGCAATTTTTCCATAACTAGAGTGAGTTGGGGGATTATTGAGGAGTGTTTTTGA

mRNA sequence

ATGCATAAACAAATTCAGATGGTGTTGGTTTACATGGTTATGCCATGGTTCTATGCATGCAAACAAACTGCACATTGTGGGAAATATAATAATTGTGATGGAAGAATGTTTGGCGGAAGGATAGCACAGGGGAAGAATGAAGCTCAAGAACCAATTGGAGATTGTGTGGGAAGATATGAAAGGAGGAATCAGGTTGAGGAAGGGTTTGATCAGATAGCCGCTGGTGATTATCTTCCTGGTCAAGTATCAAGTTTGGCTTGCAATTTTTCCATAACTAGAGTGAGTTGGGGGATTATTGAGGAGTGTTTTTGA

Coding sequence (CDS)

ATGCATAAACAAATTCAGATGGTGTTGGTTTACATGGTTATGCCATGGTTCTATGCATGCAAACAAACTGCACATTGTGGGAAATATAATAATTGTGATGGAAGAATGTTTGGCGGAAGGATAGCACAGGGGAAGAATGAAGCTCAAGAACCAATTGGAGATTGTGTGGGAAGATATGAAAGGAGGAATCAGGTTGAGGAAGGGTTTGATCAGATAGCCGCTGGTGATTATCTTCCTGGTCAAGTATCAAGTTTGGCTTGCAATTTTTCCATAACTAGAGTGAGTTGGGGGATTATTGAGGAGTGTTTTTGA

Protein sequence

MHKQIQMVLVYMVMPWFYACKQTAHCGKYNNCDGRMFGGRIAQGKNEAQEPIGDCVGRYERRNQVEEGFDQIAAGDYLPGQVSSLACNFSITRVSWGIIEECF

Homology

[Close]

BLAST of CmaCh14G011390 vs. NCBI nr
Match: KAG6581707.1 (hypothetical protein SDJN03_21709, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MHKQIQMVLVYMVMPWFYACKQTAHCGKYNNCDGRMFGGRIAQGKNEAQEPIGDCVGRYE 60
          MHKQIQMVLVYMVMPWFYACKQTAHCGKYNNCDGRMFGGRIAQGKN AQEPIGDCVGRYE
Sbjct: 1  MHKQIQMVLVYMVMPWFYACKQTAHCGKYNNCDGRMFGGRIAQGKNGAQEPIGDCVGRYE 60

Query: 61 RRNQVEEGFDQI 73
          RRNQVEEGFDQ+
Sbjct: 61 RRNQVEEGFDQV 72

The following BLAST results are available for this feature:

BLAST of CmaCh14G011390 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G011390 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G011390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581707.1	2.3e-34	97.22	hypothetical protein SDJN03_21709, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh14G011390 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..20 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G011390.1	CmaCh14G011390.1	mRNA