CmaCh14G010760 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G010760
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	50S ribosomal protein L16, chloroplastic
Location	Cma_Chr14: 6391058 .. 6397809 (-)
RNA-Seq Expression	CmaCh14G010760
Synteny	CmaCh14G010760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTATCGAAGCTTCACGAGTCAGACTCGGATCCCTACCTCATCCTCTTGCAGGTGAACATTCTTTTCCACATTTTTTAGGTGGCACAATATGTTATCTAATATATAAGTAGCTAAATCTATGATTCTTAACATTAAATCTTCGGTGACACATAACATCCATTGCGGCCCTAATTTTCCTAATCAAATATATGAAGGGTTAATATAACACATGCGGAAGGAATTTGGATCTTAGGTACTTTTAGAACATCAATTATAGTAAATAACTAGCATGTTCATAAGTATTAAAACTTAATGAGTTTGAATACTAACATTTTTAGTTCAAATTCCTTTTTCCTTACGAACCGGTTTCGAACCATCACTAGTGTCTTTTCCACTATCCTCCGGCCTTAGAAACGGGATTGTGAAATCTGGTGAGTGACTAAACTTGGGAGGATTTTTGTATATATGAAGAGAGTATTTGTGAGAGGTTTTTGTCAAGGTTTTTCACCAAAAAGAAGACCTTTCATGTATTATGATCCCTCTATTTATAGAGTCATGTTAGCATGTTCATGCAAATTTGAGATCACCAAATTTTGACACTCAAAATTCCACTCAAATGTTTGGGATTATGTGGCAAGCATGCATGCTTGAGTTAATCAAATTTTGACACTGAAAATTCCAATCAAATTTGTGGGGTTTATTTGGCAAGCATGCAAGTTTGGTTAAACTAAATTTTGACACCTCAAAATTCCACTAACATGGATTTTTCCATTAAATGAAGTCAACATTTTGACTTTCTTCATTTTGATTCAACAATCAATTTGAATTATTAATTTCAAATTAAAGTAAGATTAAATGATTAATTAAACTATTAAATTAATATTTAATATTAATTCAAATGCCAATCCCAATTAATTCCAACACATATTTGATTAAGATATTTAAATCTTATTTAAATATCTCATATTCTCTTTTTTTGTTTAATTCGTAAATAAAATAAAAATGCGGTTAAATATATCGTATATATGTAGCGCATTCTCCCTAATTTGAATTCGAACACTTCGAACTTACTCATCACACTGTTCTATGGTTTAGTTCAATATGAGCTAGTAGAGGGACTTAATGGACCTATAGATCATAGGCTTCAACGATCCAAGATTAACTGGTTAAACTCATTAACTTTGTTAACCAACATTCGTTAACTACTAGGACATTCCACTATAGCCTAGTAGTTGCACTCCCCTCACTATAGATATATTTTTGTCCATTTGATATGACCATGATTAGTAAGTCGATCCTTCACAGGTTGTTCGTAATTAGAGCTAGGTCAATTTACCGTTTTACCCCTGAAGTTACTTCTTGTTCCTTATGCCTCACTGATCGTCTAATGAACAATTGGTTTATGGTTCAACTAGTAAACTGAATCCGTCTCAGGCCAACGAGAGGGTGGGGCCCCTTGTTCAAGACCTGGAGTTAGTACTTAAGGGAACTACCTCTCTTCTTTCCCTAAAAGTGGGTAGGAGTGAATTTCATTTTGCACCCCACGTCCCCAATCATTTACCCAGTCTTACCCCTGAAATGGGAGGCCTATTGAGTCGGCGAACTTGAGCCACTATCACCCATGAAAATCTAAGGATAATTCCGAATAAACAGGAGTTCATGGTTAGCTCAGGATTAAGATTGAGTTACCTAGGTTATCAAATGAAAAGAAAATTAGTCTCAACAGTAAACAACATTATAAAGTGAGAATGATTTTCTTCATTGTCCGATCTTATACAATACTCATTGCATAGGATGCCCCCACTCACATGTTTCCACATGTACAATTTTAGTGATCACATTGTTTATATCATATACAAAAGTGGTCCGCATCTATAGTGTCCCCAGAATAAGGTACTTAGCCTTATCCTTATATTGTAGATCATTTTGACTATATACTACTTAATCAACTCTTATGTCTCTACATATAGTTCAAGTAATTATACTATAGCCAGAGTGTTCTTAGTTTATTGGATTTAGATTAATGATCGTAAAGTTCACTTTATTCAATAACAATCTTTACTGAATAAACAACAATAATAACTTTATTGAAAAATAGAATATGTTTTTGTTTACAAACTATGAGTTTTAGGACATAAAACCCAACAATATAGATACTACTGCATGCATTACATGACTAATAAGTGTGGAAAAGTCTATGAAAATATTTCATAAATGATGTCGTGAACTTAAACCTTCATAATAAATTAATTAAAAACAATATTGTTATGACAATATAGCAGAAAATAGCTAACGTGAATTTAAATGAGATAAAAAAAAAAGGTGATGTCGTGATCTAACCTAAGGACTATTAAATCAAACATGAATGCAACTACCCTAGCTTCGATCTCATGGCCTTCACTAGACACCGTCATCTATACAAGAGTGTCTTACCTTTACCTAAAAAGGAAGAGTAACATGTGACTTAGTATTTTAAGAAATAATCCACAAGTAACCCCACTGTGGAAAAAAAATATGCAATGAAATGCAATATGGTGGGACCTATCATTTCATAAAACCATCATGACATGACTTTAAACTTAGTCCGGGCAGGTTGAATGTGTAGTACTTTCATACACACGGCCCACACATGTGCACATAGTCTCATCAGACAGACTCATGTATATATTCCCTAGGCCTCATTCATCGGGTTAGTGCACGCTCACGCCACCAGAAACCACATAGAGAAAGGACCCACGTAATATCAGGACCAATATAGATATCATAATGTACGCATTCGTATTATTCTGTAGCGCCCGAGTTTAAAAATAAAAAAAAATAAAAAAAAGAGTCACACTAAGGGCAAACTAGTCATTTTTCCCTATTATTACTTGAGGGGTCTGATGTGAATGGGGTCATAATCTGAAAAGAGAAAGAAGAGGGGAGAGAAAGAGGGAAAGAAGATTAGGGTTTTTGAGTTAGGAGTAGGAGATCGGATCATAACCGACACTGGAGATCCGAGTCCCCAATCTAAACCATCAATAGTCCGAGGAAAGGTGCTCTCACGAATCGCACCTTCCTATTTCGTCAAAACGTCCCAGAACTTCAGGTTAGTCCACGAGTGTCTAGATCGAGAAGTCATCAAGATTTTCGTGTGTTAGCGACGTTTTATGTTGATTCTTGGACTCTTACCCTCAACAGCGTTATGTGGTTAAGTTTTGGAGTGAAGGCGACCAAGATTGGCGTTGAGTTTCAAGAAAACGTGATTTTCGGTAAGAACTCGTGTTTTCTTCGAATTCGAACTCAAATATTAAGATTTGTGATTATCAGAAAAATATAAGAAAATTGTTTCGAAAGAGTAGAACATAAGATCTACAAGATTCGTGAAGAAAGTTTGTTGAATAGGATTATGGATTGGAAGATAAAAAAATAGGAAGAAAATGGATCGAAAATACCCAAACTCATGTTTTTGGAAAACACGCGGGAGAGAGGGAGGAGACGCCACAACGCGTCGGCCAACGTACAGGGGAGTGCAGCGGAAACGGTGATCAACATGTGGCAATCATCGATTGGTGAGGCGCGTCCTCACCCGGCAGTGGACACGTGTCAAGCTCTTAGATCCGGGCTGGCCCGACCCGGCACCGCACGTGAACCGCTTGTTTCTAAACCACCTAGACTTGGCGTCTCTAACCCGCGACTACTCGGGAAACCACGCGCGCGTAGAAACCCTCCCGAACGCGTGTTGGCGCGTGTAAGCACGTGAGGCACTATTTTTCTTTTCGTTCGGTCTCTATTTGCTTGTTTTTCGACCCGATTTTGATACTGACCCTATTATTATGTGAATTACAACCTGTCAAGGAAATTCCATAATTTTTGGGATCCTTTCCATCAAGAAAACTCGAACTCGGGAAGGCATGCGTCAACCAAGTAAGTAGTCATTTGGATTCCCACGAGTAGTACTTGTAGGAATTGCTAGGAACAAGCATGCATGTTACCACCAATTAACTTAGCTAGCCGAACCTAGCATATTAGTATGAAAATTACGAAAATGAAATGATTAAGGAAAGCTAGATATGAATTGTTTACTAAACCTGTTTTGATTGAGATAGTGATAAAGTATGTATGCATGAGGAGGATGGGAAACTTTTGAAATCTGCGCTCCTAGTGAAGATGGACGTTATCTTCCCGTTGAGCATGTTTGTTAATATTGGATGAACTATTGCGTGTGGACTCCTATGCTTATAATTGCTTGTATTATCTTTCTTGTTGAATAGGAAGAAATTATGAGCGTAGACTAGGATGCTTGTGACTAAGTAGGTTAGACGAGATCCTAGATTAGGAGATCTCTAGTATACCGTGCATATAGACCCGCGAAGTGATTACTGGCAGACCCAGAGCCCAGAATTTCAAACCCAATAGGTTTATGAGACCAGGCACGAGAATCCTAGAGATGCATGAATCCAAGTCTAAGCCACCAAGTTCCACCCTAGAAAGAATAGTAAGTCACCACGGTAACTGTAGGTAGCCCGCTAGAGTTGAGCAGTGTGGATAGTGTCATCAGAACCTCCACTTCCCTCTCTGCTTCGATACCGTACCGTCGAGACAGAGCTCCGGTATAGAGATCGTTTAGCTTGGAAGATCCAGACAGGGAAGTGTGACAAGTGCCCAGACCTAGTGGTGATAGCTGAGGGGTCTTCTGAACAAGACTCCTGGGCCGTAGAAACCCGTCCATGAGCGGGGGACGTGGAGCCATATAGGATGACTCAGTAGCTGACCGGCACATAGGGGGTCACACCCCAAATTTAGTGGATGTATGGTTTCGTGTGAGGGTCGTCAGCTAACCTCCATGAATGATGTTTAGAGAGAGTCACATATTCAGATCCATCCATACGATCCCCTCAGATTTATTTATGAGGTCGCGTCTCACCTTAGGACACTGATCATTTCACTGTATAAGATGGGAAAGCCTCCTAAGATTCAGAAAAAAGAGTTGTAGCTTAGATCACTCTCCTTAGAAACCCGAGAAAGACCGTGGATACCTACCAAGATAAGGATGCAAAAAGAGCCTACAAGTAGGCCGCTTACTGAGTATTTTTATACTCATTCCTTTCTACTCTTTTTTTTTTTTTTTCAGGTGAGTGATGTCATGGTTCTAGGCGGAGGTGAGTGATGCCATGGTTCGAAGCGGGAATGGATGCTGAATCTTAATGCCACAGATGAGTGACCAGGGACGTCTAGGAGTCTGTGCATTTTTTTTAGATCTGTCATGCATTGTTTGGTAAACCATTTACATACTTTTCTTACTTGAACACCTTGTTTTGGATTTCAAACTTTCTACATAATTGCTAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATTTCGTCTTGTCTATTTGCTTTTACACGATTTCATTGCATAGTCTGTTGGTCCAGCCCTTGATTTCGAGATTCAAATTTTGGGTTGTGACACAATCACAATGGGAAAGTATCCTGATGCAAATGACACGCATAAATGCATGAGATCCCCATAGCTTAAAACCATGACATAAGTTTATGATTCAACATACCTTCATTCATTCATGACATAACAAGTCTGTGAGACATGCATACGTAATAATTGTCATATCTTCCCTAATTAACAGAATTTACATAGCTTGGTGTATGGAGTTTTATACATCATATCATCAATATCATAAATATAATTCCACAACATGGTAACATGGTATAGTCGTATTATAGCATAGCTTATAACATAACATAATACGACATAGCATAATTTATAACATAGCATAGCATCACATAATACATGCAAACAGTCATAACAATGACATGTGCAGGGTTCACTAAATTTCTTGAGTTGATGTTCGTTTTATCCTACTATCGAGGAATAGCCAAAATTAACTCCAAATCGACTTCCTCAATTTTCTTTTTTCTTCATCGTGTTCTCCAAATTGGTGTTGGCTAGAAATAAAAGAAATGATAGTATGGAGACTGAGAAATAACACACACACCTTAAGTTTGGAATAACTCTAGGCACTTCTCCATTGTTTATGATTGTATCTCCTAATCCTAGAAGTAAGATTATTTACTAAATATGTTTGATACTCAATATTTTCTATTTTTTAGGTAAAGGCAAAGACATTTTAAGCAGCATAGTAATCGCTATAAAGAGTTTCGATAGAATTTTGTTTATATTACAAATTTTCATGCTTTTAATATCTTATGCAAATTCGTTTTCATTTGAAACAAGGATGAGTTTCATGTTATCAATGTTTAATGGTCCACTTATGTTTTAGGATTCCTTTTGGGATCCCAAATAAAAGTCTAACTTTTTTTTTTTTTAGATCTTTTATCCACAACCATTTTCATCTTCGTAAACACCATAGAGGAAGAATGAAAGGAATATCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAAGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCAGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCAAAAATGCCTATACGAACCCAATTCATTACTTCGTGA

mRNA sequence

ATGACTTATCGAAGCTTCACGAGTCAGACTCGGATCCCTACCTCATCCTCTTGCAGATCTTTTATCCACAACCATTTTCATCTTCGTAAACACCATAGAGGAAGAATGAAAGGAATATCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAAGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCAGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCAAAAATGCCTATACGAACCCAATTCATTACTTCGTGA

Coding sequence (CDS)

ATGACTTATCGAAGCTTCACGAGTCAGACTCGGATCCCTACCTCATCCTCTTGCAGATCTTTTATCCACAACCATTTTCATCTTCGTAAACACCATAGAGGAAGAATGAAAGGAATATCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAAGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCAGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCAAAAATGCCTATACGAACCCAATTCATTACTTCGTGA

Protein sequence

MTYRSFTSQTRIPTSSSCRSFIHNHFHLRKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITS

Homology

[Close]

BLAST of CmaCh14G010760 vs. ExPASy Swiss-Prot
Match: Q4VZN1 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.0e-65
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 10  RKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT
Sbjct: 70  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 129

Query: 149 QFITS 154
           QFITS
Sbjct: 130 QFITS 134

[Close]

BLAST of CmaCh14G010760 vs. ExPASy Swiss-Prot
Match: Q09ME0 (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.8e-63
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RK HRGRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRG KIWVRIF
Sbjct: 11  RKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIF 70

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT
Sbjct: 71  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 130

Query: 149 QFITS 154
           QFI S
Sbjct: 131 QFIIS 135

[Close]

BLAST of CmaCh14G010760 vs. ExPASy Swiss-Prot
Match: Q09WY0 (50S ribosomal protein L16, chloroplastic OS=Morus indica OX=248361 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.8e-63
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 10  RKHHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKP+T+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV ENIARKAI+IAASKMPIRT
Sbjct: 70  PDKPITVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVPENIARKAIAIAASKMPIRT 129

Query: 149 QFITS 154
           QFI S
Sbjct: 130 QFIIS 134

[Close]

BLAST of CmaCh14G010760 vs. ExPASy Swiss-Prot
Match: Q2L940 (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.2e-63
Identity = 118/125 (94.40%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RK HRGRMKGISYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRG KIWVRIF
Sbjct: 10  RKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPI+T
Sbjct: 70  PDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIKT 129

Query: 149 QFITS 154
           QFI S
Sbjct: 130 QFIIS 134

[Close]

BLAST of CmaCh14G010760 vs. ExPASy Swiss-Prot
Match: B1NWI7 (50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.1e-63
Identity = 118/125 (94.40%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RK HRGRMKGI++RGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 10  RKQHRGRMKGIAFRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKAISIAASKMPIRT
Sbjct: 70  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRT 129

Query: 149 QFITS 154
           QFI S
Sbjct: 130 QFIIS 134

[Close]

BLAST of CmaCh14G010760 vs. ExPASy TrEMBL
Match: X2EZK1 (50S ribosomal protein L16, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 10  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT
Sbjct: 70  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 129

Query: 149 QFITS 154
           QFITS
Sbjct: 130 QFITS 134

[Close]

BLAST of CmaCh14G010760 vs. ExPASy TrEMBL
Match: A0A344AXR1 (50S ribosomal protein L16, chloroplastic OS=Cucurbita pepo OX=3663 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 9   RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 68

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT
Sbjct: 69  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 128

Query: 149 QFITS 154
           QFITS
Sbjct: 129 QFITS 133

[Close]

BLAST of CmaCh14G010760 vs. ExPASy TrEMBL
Match: A0A6H0ET50 (50S ribosomal protein L16, chloroplastic OS=Dendrosicyos socotranus OX=229694 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.9e-63
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 10  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAI+IAASKMPIRT
Sbjct: 70  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAIAIAASKMPIRT 129

Query: 149 QFITS 154
           QFITS
Sbjct: 130 QFITS 134

[Close]

BLAST of CmaCh14G010760 vs. ExPASy TrEMBL
Match: A0A7T3QNM8 (50S ribosomal protein L16 OS=Benincasa hispida OX=102211 GN=rpl16 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.5e-63
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 10  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIARKAISIAASKMPIRT
Sbjct: 70  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARKAISIAASKMPIRT 129

Query: 149 QFITS 154
           QFITS
Sbjct: 130 QFITS 134

[Close]

BLAST of CmaCh14G010760 vs. ExPASy TrEMBL
Match: A0A6H0EX62 (50S ribosomal protein L16, chloroplastic OS=Nothoalsomitra suberosa OX=386201 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.5e-63
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 10  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKAISIAASKMPIRT
Sbjct: 70  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRT 129

Query: 149 QFITS 154
           QFITS
Sbjct: 130 QFITS 134

[Close]

BLAST of CmaCh14G010760 vs. NCBI nr
Match: AHM88685.1 (ribosomal protein L16 [Lagenaria siceraria] >QZL38631.1 ribosomal protein L16 [Citrullus naudinianus] >QZL38719.1 ribosomal protein L16 [Citrullus ecirrhosus] >AHM88744.1 ribosomal protein L16 [Lagenaria siceraria] >AHM88802.1 ribosomal protein L16 [Lagenaria siceraria])

HSP 1 Score: 251.5 bits (641), Expect = 4.6e-63
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 10  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT
Sbjct: 70  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 129

Query: 149 QFITS 154
           QFITS
Sbjct: 130 QFITS 134

[Close]

BLAST of CmaCh14G010760 vs. NCBI nr
Match: YP_009505117.1 (ribosomal protein L16 [Cucurbita pepo] >AWX90386.1 ribosomal protein L16 [Cucurbita pepo])

HSP 1 Score: 251.5 bits (641), Expect = 4.6e-63
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 9   RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 68

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT
Sbjct: 69  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 128

Query: 149 QFITS 154
           QFITS
Sbjct: 129 QFITS 133

[Close]

BLAST of CmaCh14G010760 vs. NCBI nr
Match: YP_009752112.1 (ribosomal protein L16 [Dendrosicyos socotranus] >QIT05522.1 ribosomal protein L16 [Dendrosicyos socotranus])

HSP 1 Score: 250.4 bits (638), Expect = 1.0e-62
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 10  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAI+IAASKMPIRT
Sbjct: 70  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAIAIAASKMPIRT 129

Query: 149 QFITS 154
           QFITS
Sbjct: 130 QFITS 134

[Close]

BLAST of CmaCh14G010760 vs. NCBI nr
Match: YP_009752703.1 (ribosomal protein L16 [Ampelosycios humblotii] >YP_009753295.1 ribosomal protein L16 [Nothoalsomitra suberosa] >QIT05184.1 ribosomal protein L16 [Ampelosycios humblotii] >QIT06367.1 ribosomal protein L16 [Nothoalsomitra suberosa])

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-62
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 10  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKAISIAASKMPIRT
Sbjct: 70  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRT 129

Query: 149 QFITS 154
           QFITS
Sbjct: 130 QFITS 134

[Close]

BLAST of CmaCh14G010760 vs. NCBI nr
Match: QJA16182.1 (ribosomal protein L16 [Siraitia grosvenorii])

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-62
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRG KIWVRIF
Sbjct: 11  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 70

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKAISIAASKMPIRT
Sbjct: 71  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRT 130

Query: 149 QFITS 154
           QFITS
Sbjct: 131 QFITS 135

[Close]

BLAST of CmaCh14G010760 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 228.8 bits (582), Expect = 3.0e-60
Identity = 111/125 (88.80%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 29  RKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRIF 88
           RK HRGR+KGIS RGNRICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRG KIWVRIF
Sbjct: 10  RKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIF 69

Query: 89  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 148
           PDKPVT+RP ETRMGSGKGSPEYWVAVVKPG+ILYEM GV ENIARKAISIAASKMPI+T
Sbjct: 70  PDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKT 129

Query: 149 QFITS 154
           QFI S
Sbjct: 130 QFIIS 134

[Close]

BLAST of CmaCh14G010760 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 172.2 bits (435), Expect = 3.3e-43
Identity = 88/126 (69.84%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 29  RKHHRGRM-KGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGRKIWVRI 88
           +KHHRGR+ KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V I
Sbjct: 838 QKHHRGRINKGVSSQG-YIC-SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVRVHI 897

Query: 89  FPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIR 148
           F DKPVT+RP ETRMG GKG+P +WVAVVKPG+I+YEM GV+E +AR+AISIAASK+P +
Sbjct: 898 FADKPVTVRPPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVAREAISIAASKLPAK 957

Query: 149 TQFITS 154
           T+FI S
Sbjct: 958 TKFIIS 961

[Close]

BLAST of CmaCh14G010760 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 97.8 bits (242), Expect = 7.9e-21
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 30  KHHRGR-MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRG 89
           K+ +GR  +G    G ++ FGRY  ++ +   ++ R IEA R        RAM+   RR 
Sbjct: 46  KYRKGRCSRGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAMSGQFRRN 105

Query: 90  RKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIA 149
            KIWVR+F D P+T +PTE RMG GKG+P  W+A V  G+I +EM GV+   AR+A ++A
Sbjct: 106 GKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANARQAATLA 165

Query: 150 ASKMPIRTQFI 152
           A K    T+F+
Sbjct: 166 AHKPCSSTKFV 176

The following BLAST results are available for this feature:

BLAST of CmaCh14G010760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZN1	3.0e-65	98.40	50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=...	[more]
Q09ME0	4.8e-63	95.20	50S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=...	[more]
Q09WY0	4.8e-63	93.60	50S ribosomal protein L16, chloroplastic OS=Morus indica OX=248361 GN=rpl16 PE=3...	[more]
Q2L940	6.2e-63	94.40	50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 ...	[more]
B1NWI7	8.1e-63	94.40	50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 P...	[more]

BLAST of CmaCh14G010760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
X2EZK1	2.2e-63	99.20	50S ribosomal protein L16, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rpl16...	[more]
A0A344AXR1	2.2e-63	99.20	50S ribosomal protein L16, chloroplastic OS=Cucurbita pepo OX=3663 GN=rpl16 PE=3...	[more]
A0A6H0ET50	4.9e-63	98.40	50S ribosomal protein L16, chloroplastic OS=Dendrosicyos socotranus OX=229694 GN...	[more]
A0A7T3QNM8	6.5e-63	98.40	50S ribosomal protein L16 OS=Benincasa hispida OX=102211 GN=rpl16 PE=4 SV=1	[more]
A0A6H0EX62	6.5e-63	98.40	50S ribosomal protein L16, chloroplastic OS=Nothoalsomitra suberosa OX=386201 GN...	[more]

BLAST of CmaCh14G010760 vs. NCBI nr


Match Name	E-value	Identity	Description
AHM88685.1	4.6e-63	99.20	ribosomal protein L16 [Lagenaria siceraria] >QZL38631.1 ribosomal protein L16 [C...	[more]
YP_009505117.1	4.6e-63	99.20	ribosomal protein L16 [Cucurbita pepo] >AWX90386.1 ribosomal protein L16 [Cucurb...	[more]
YP_009752112.1	1.0e-62	98.40	ribosomal protein L16 [Dendrosicyos socotranus] >QIT05522.1 ribosomal protein L1...	[more]
YP_009752703.1	1.3e-62	98.40	ribosomal protein L16 [Ampelosycios humblotii] >YP_009753295.1 ribosomal protein...	[more]
QJA16182.1	1.3e-62	98.40	ribosomal protein L16 [Siraitia grosvenorii]	[more]

BLAST of CmaCh14G010760 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00790.1	3.0e-60	88.80	ribosomal protein L16	[more]
AT2G28830.1	3.3e-43	69.84	PLANT U-BOX 12	[more]
ATMG00080.1	7.9e-21	41.98	ribosomal protein L16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 43..55 score: 47.85 coord: 77..106 score: 64.93 coord: 107..136 score: 58.87 coord: 61..72 score: 71.5
IPR000114	Ribosomal protein L16	TIGRFAM	TIGR01164	TIGR01164	coord: 27..146 e-value: 7.1E-56 score: 185.7
IPR000114	Ribosomal protein L16	PANTHER	PTHR12220	50S/60S RIBOSOMAL PROTEIN L16	coord: 11..152
IPR000114	Ribosomal protein L16	HAMAP	MF_01342	Ribosomal_L16	coord: 20..153 score: 35.999306
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 28..151 e-value: 4.8E-45 score: 152.8
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 42..151 e-value: 2.59715E-51 score: 157.268
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 21..153 e-value: 1.4E-58 score: 199.8
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 28..152
None	No IPR available	PANTHER	PTHR12220:SF13	39S RIBOSOMAL PROTEIN L16, MITOCHONDRIAL	coord: 11..152
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 101..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G010760.1	CmaCh14G010760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome