CmaCh14G010490 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G010490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 5527081 .. 5527706 (+)
RNA-Seq ExpressionCmaCh14G010490
SyntenyCmaCh14G010490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCTACTCTCATAGCTATGGCTATTGCTATGGCTATCACCTAGCAAAGAAAAAGGGGCATTAGATATCATGGGAGTATATGCATGCCTCCTTATTTCCCTCTTATTAATCTTTCAAACTCATTCCATTTCTTCCCTTTCCAATGGGTTTCCTTCCATTTCCAACCACTCGTTCAACTCTCAACCCCTTCAACACCATCATCAACTTTTAGGTAACATCAAAATTGTTTTCGACTTATTTTCTTGATCACGTGTAAAATGTTTTCCTTACCTTCTTTTCCTTGGTTGTCAGTGAGCGGAAGGGATGACGGAGAAGAGAATACGACCGCGGTGAATTCGGTTGTTTTAAAGGCTAAAGGGGGAAAGTCAGGCAGCGCTGGGGCAGGCACCAACAACCACCGGCCGGGGAAGGCGAAGAACGCAGCTGCTAGTTTGTTTGAGTTTAATATAATTTACTTTGTTCTCAACTCTGCTGGTCTCTTCCTATTCTTCTATATCAGTTCTTAAGAAGGAATCATATGGAAGGATAAGTATCTTTTTGGTTTTGCTTGAGGAAAGTTTAGTTATGAATCACTTATACATGTATACATATGGATCATGGCATGATATGTTATGGATTGATGAATAA

mRNA sequence

ACCTACTCTCATAGCTATGGCTATTGCTATGGCTATCACCTAGCAAAGAAAAAGGGGCATTAGATATCATGGGAGTATATGCATGCCTCCTTATTTCCCTCTTATTAATCTTTCAAACTCATTCCATTTCTTCCCTTTCCAATGGGTTTCCTTCCATTTCCAACCACTCGTTCAACTCTCAACCCCTTCAACACCATCATCAACTTTTAGTGAGCGGAAGGGATGACGGAGAAGAGAATACGACCGCGGTGAATTCGGTTGTTTTAAAGGCTAAAGGGGGAAAGTCAGGCAGCGCTGGGGCAGGCACCAACAACCACCGGCCGGGGAAGGCGAAGAACGCAGCTGCTATTCTTAAGAAGGAATCATATGGAAGGATAAGTATCTTTTTGGTTTTGCTTGAGGAAAGTTTAGTTATGAATCACTTATACATGTATACATATGGATCATGGCATGATATGTTATGGATTGATGAATAA

Coding sequence (CDS)

ATGGGAGTATATGCATGCCTCCTTATTTCCCTCTTATTAATCTTTCAAACTCATTCCATTTCTTCCCTTTCCAATGGGTTTCCTTCCATTTCCAACCACTCGTTCAACTCTCAACCCCTTCAACACCATCATCAACTTTTAGTGAGCGGAAGGGATGACGGAGAAGAGAATACGACCGCGGTGAATTCGGTTGTTTTAAAGGCTAAAGGGGGAAAGTCAGGCAGCGCTGGGGCAGGCACCAACAACCACCGGCCGGGGAAGGCGAAGAACGCAGCTGCTATTCTTAAGAAGGAATCATATGGAAGGATAAGTATCTTTTTGGTTTTGCTTGAGGAAAGTTTAGTTATGAATCACTTATACATGTATACATATGGATCATGGCATGATATGTTATGGATTGATGAATAA

Protein sequence

MGVYACLLISLLLIFQTHSISSLSNGFPSISNHSFNSQPLQHHHQLLVSGRDDGEENTTAVNSVVLKAKGGKSGSAGAGTNNHRPGKAKNAAAILKKESYGRISIFLVLLEESLVMNHLYMYTYGSWHDMLWIDE
Homology
[Close]
BLAST of CmaCh14G010490 vs. ExPASy TrEMBL
Match: A0A0A0LCI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.9e-14
Identity = 67/128 (52.34%), Postives = 78/128 (60.94%), Query Frame = 0 

Query: 1   MGVYACLLISLLLIFQTHSISSLSNGFPSISNHSF-----NSQPLQHHH-----QLLVSG 60
           MGVYACLLISLLLI QT  ISSLSN     SN+SF     ++ PLQ HH     +L+  G
Sbjct: 1   MGVYACLLISLLLILQTVWISSLSNA----SNNSFPYESLSNPPLQTHHLHQQPRLVKGG 60

Query: 61  RDDGEENTTAVNS-VVLKAK-GGKSGSAGAGTNNHRPGKAKNAAAILKKESYGRISIFLV 117
               E N TA  S  V KAK GG+SG+ GAG NNHRPGKAKNAA+ L   +   I I  +
Sbjct: 61  GGKEENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTL 120

[Close]
BLAST of CmaCh14G010490 vs. NCBI nr
Match: KAG6581619.1 (hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.5 bits (410), Expect = 2.5e-36
Identity = 87/95 (91.58%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1  MGVYACLLISLLLIFQTHSISSLSNGFPSISNHSFNSQPLQHHHQLLVSGRDDGEENTTA 60
          MGVYACLLISLLLIFQTHSISSLSNG   ISNHSFNSQPLQHHHQLLVSGRDDGEENTT 
Sbjct: 1  MGVYACLLISLLLIFQTHSISSLSNGSLPISNHSFNSQPLQHHHQLLVSGRDDGEENTTT 60

Query: 61 VNSVVLKAKGGKSGSAGAGTNNHRPGKAKNAAAIL 96
          V  VVLKAKGG+SGSAGAGTNNHRPGKAKNAAA L
Sbjct: 61 VKLVVLKAKGGRSGSAGAGTNNHRPGKAKNAAASL 95

[Close]
BLAST of CmaCh14G010490 vs. NCBI nr
Match: KGN58897.2 (hypothetical protein Csa_001334 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-13
Identity = 67/126 (53.17%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 1   MGVYACLLISLLLIFQTHSISSLSNGFPSISNHSF-----NSQPLQHHH---QLLVSGRD 60
           MGVYACLLISLLLI QT  ISSLSN     SN+SF     ++ PLQ HH   Q  + G  
Sbjct: 1   MGVYACLLISLLLILQTVWISSLSNA----SNNSFPYESLSNPPLQTHHLHQQPRLGGGG 60

Query: 61  DGEENTTAVNS-VVLKAK-GGKSGSAGAGTNNHRPGKAKNAAAILKKESYGRISIFLVLL 117
             E N TA  S  V KAK GG+SG+ GAG NNHRPGKAKNAA+ L   +   I I  +LL
Sbjct: 61  KEENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLL 120

[Close]
BLAST of CmaCh14G010490 vs. NCBI nr
Match: KAG6606846.1 (hypothetical protein SDJN03_00188, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 50/100 (50.00%), Postives = 59/100 (59.00%), Query Frame = 0 

Query: 1  MGVYACLLISLLLIFQTHSISSLSNGFPSISNHSFNSQPLQHHHQLLVSGRDD--GEENT 60
          MG YACLLISLLL FQ  + S L    PS SNHS NS PL     ++  G  D  GE+N 
Sbjct: 1  MGAYACLLISLLLFFQLPNASPL----PSNSNHSINSLPL-----VIPPGGGDTGGEQNL 60

Query: 61 TAVNSVVLKAK-GGKSGSAGAGTNNHRPGKA--KNAAAIL 96
          T    VVL+A+ GG+S  AG    N RP +A  KNAA+ L
Sbjct: 61 TVAGWVVLRARGGGRSVGAGGSIINRRPRRATNKNAASNL 91

The following BLAST results are available for this feature:
BLAST of CmaCh14G010490 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G010490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCI54.9e-1452.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1[more]
BLAST of CmaCh14G010490 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581619.12.5e-3691.58hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN58897.21.3e-1353.17hypothetical protein Csa_001334 [Cucumis sativus][more]
KAG6606846.12.3e-0550.00hypothetical protein SDJN03_00188, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh14G010490 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G010490.1CmaCh14G010490.1mRNA