CmaCh14G010100 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G010100
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	arabinogalactan peptide 23-like
Location	Cma_Chr14: 5315280 .. 5315465 (+)
RNA-Seq Expression	CmaCh14G010100
Synteny	CmaCh14G010100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGCCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

mRNA sequence

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGCCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

Coding sequence (CDS)

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGCCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

Protein sequence

MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYLQ

Homology

[Close]

BLAST of CmaCh14G010100 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-12
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A LPA+GS +GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of CmaCh14G010100 vs. ExPASy TrEMBL
Match: A0A6J1J6Y9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.0e-20
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of CmaCh14G010100 vs. ExPASy TrEMBL
Match: A0A6J1K873 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60
          MEM KI CA+LFAAATVSAVVAHDEA APAPGP+SGA  GLPAIGS IGASLLSVAAYYL
Sbjct: 1  MEMNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of CmaCh14G010100 vs. ExPASy TrEMBL
Match: A0A5A7U280 (Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00270 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60
          MEMKKIACA+LFAAATVSA VA D+ALAPAPGPSSGAA GLPAIGS +GASLLS AAYYL
Sbjct: 1  MEMKKIACAILFAAATVSAAVAEDKALAPAPGPSSGAAIGLPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of CmaCh14G010100 vs. ExPASy TrEMBL
Match: A0A0A0L9U8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATV+AVVA DEALAPAPGPSSGA  G+PAIGS +GASLLS AAYYL
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of CmaCh14G010100 vs. ExPASy TrEMBL
Match: A0A6J1HQG2 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.4e-14
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60
          MEMKKI CAVLFAAATV+A VA +EA APAPGP+S A  GLPAIGS IGASLLSVAAYYL
Sbjct: 1  MEMKKITCAVLFAAATVTAAVAQNEASAPAPGPTSAATVGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of CmaCh14G010100 vs. NCBI nr
Match: XP_022983304.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of CmaCh14G010100 vs. NCBI nr
Match: XP_038905644.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 100.9 bits (250), Expect = 4.0e-18
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATVSA VAHDEALAPAPGPSSGAA GLPAIGS IGASLLSVAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of CmaCh14G010100 vs. NCBI nr
Match: KAG7018086.1 (hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 5.2e-18
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 3   MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYLQ 62
           MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGS IGASLLSVAAYYLQ
Sbjct: 48  MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ 106

[Close]

BLAST of CmaCh14G010100 vs. NCBI nr
Match: KAG7019275.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 4.4e-17
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60
          MEMKKI CA+LFAAATVSAVVAHDEA APAPGP+SGA AGLPAIGS IGASLLSVAAYYL
Sbjct: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of CmaCh14G010100 vs. NCBI nr
Match: XP_022998512.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 94.0 bits (232), Expect = 4.9e-16
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60
          MEM KI CA+LFAAATVSAVVAHDEA APAPGP+SGA  GLPAIGS IGASLLSVAAYYL
Sbjct: 1  MEMNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of CmaCh14G010100 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 71.2 bits (173), Expect = 3.2e-13
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A LPA+GS +GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of CmaCh14G010100 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 4.3e-10
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGP-SSGAAAGLPAIGSAIGASLLSVAAYY 60
          MEMKKIAC V+FAAA+++AV+A  E  APAPGP +SGA+  +PA+GS +GASL+S+ AYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMA-AEVGAPAPGPAASGASVAVPALGSLVGASLVSLFAYY 60

The following BLAST results are available for this feature:

BLAST of CmaCh14G010100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	4.4e-12	66.67	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of CmaCh14G010100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6Y9	6.0e-20	100.00	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4...	[more]
A0A6J1K873	2.4e-16	86.89	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4...	[more]
A0A5A7U280	2.0e-15	86.67	Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0L9U8	4.4e-15	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1	[more]
A0A6J1HQG2	6.4e-14	81.97	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4...	[more]

BLAST of CmaCh14G010100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983304.1	1.2e-19	100.00	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
XP_038905644.1	4.0e-18	95.08	arabinogalactan protein 23-like [Benincasa hispida]	[more]
KAG7018086.1	5.2e-18	98.31	hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7019275.1	4.4e-17	90.16	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022998512.1	4.9e-16	86.89	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]

BLAST of CmaCh14G010100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	3.2e-13	66.67	arabinogalactan protein 23	[more]
AT2G41905.1	4.3e-10	63.93	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..61
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G010100.1	CmaCh14G010100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane