CmaCh14G007530 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G007530
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTranslocon-associated protein subunit beta
LocationCma_Chr14: 3754298 .. 3757190 (+)
RNA-Seq ExpressionCmaCh14G007530
SyntenyCmaCh14G007530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATGTTCTCTGATTGTTCCACACTTTTGCGTACCTATTTTATCCGACGGCTCCTTCTTCTGAAAGTCCCATTTCGTCTCGGCCGATCATCTATCTCTGTGGCCTAATCCTGACGATTTCATGGCGAATCTGATTCAGGCTCGTTTGATCCATCTCCTCCTGGCTTTGCTGTTCGTCTCGTCAACGATCGCAAGCTCCGATGTCCCGTTCATTGTCGCGCACAAGAAGGCGACGCTCACTCGTCTCAAATCCGGCGTCGAACGCGTCTCGGTCTCAATCGAAATTTACAATCAGGGATCTTCGTATGTTTTGTTTAATTCGTTTAATCTGATTTCGCTTTTGTTTTCTGGATTGAGCTTTACTCATCAAGTGGCCTCTGGGATGTAGATCGAATCGTTGTTTGCGCATGCGTGATTTGATTCATATCTTTTGTTCTGGATCTAAATTGGTTTTGTTTGTACGTTCTTTTTTCTTTTTTTTTTCGCTTCCTTCTGTGCTTGTGATTGGTTTTAAGTTGTCGTCTCGGGGATATAAATGTTAGATTCAGGCGTCAGGAAAATGTTCCCAATGATACAAGATTAGATGCTTTCATGGCTGTGAAATTTGGTGCATTTGTATTTTATGAATTGTGGAAAAAGTTCGCAATGTCTTGGTTCTTGGTTTGACACAAAGATCTTGAATGCTACTATGAACTCGAACCAGGCGTAGCTCTCCTGGCTGCATCAATAAATTCTGTATTTTGGATTTTCTATGTAAGTTTCGCAAAAGGGTTGGCCAGGTCACTTTATTTTGATGAATACTACATTGTCAGTCAGAATATTCGATCAGCCATGATATTTGTTGCCATTCCAGGAGTTAGTGCCTAGATCTTGTTTCACTTTAAAAATTTGTTCATTAGGGCTGCTACATTTGCCCTGCAACGGGAAGATATAAACCGTTCTTCCAGTGATATTTTGTAGAAATTTTACAATTTGATGTAATTTTATTTGTTTATAAACGGTAGCCGTGGTGAGAGGAGGGCTGTGTGTGTGTGTGTGATGAGCATTAACTGGTATTAGAAACTGTCTAGATTAAAGTAGCAGAATTATCTACTTGTCTTGCATGATACAAATCATGAGAAGCTTGGAAGGGGATTCCCAAGATGTTTTTTGACATGTTTCCTATCTTATAATCCCTGATTTGAAGGAATCTTTTCTTTTATCCCGTTGCTCTGTTGCCTTCTATATATTTTCATTTCTAAGTAGCCTGGTTTCTGATTTTCACCCTCTTTTTGGTATTTTCACTTATAACGATTACAGGACCGCATATGATGTTACTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATATTGTCAGTGGCGAGACATCCAAATCGTGGGAAAGACTCGATGCGTAAGTGATATGATTTGTTTAGTATTCTTTCCTATATGCCATGGTGTACCCTCCATTGGGTTTTCGTACCACTAACACAAAAATCTGCTGTTTGACAGTGGTGGTCATTTATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCTGTTATCACGTTCCGTGTCCCTACGAAGTCTGCTTTACAGGTCAAATATCCTTTCAATAATGATTTTAGTCTGGTTACGTAAGGTTCCAGTCGTTTTACCGTGTTCTTCTTGATTGCTGTAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGATAGGCCACCAGAGAAGAAGTTTGAGTGGGTAAGTTCATCCCTTATTTTTTTTTCCCTACTTCAAGCTTAATGATGTATTCTTTTCAATTTGGTTTACTGTAACAATCTTTTTGCCTTTGCATGGAATTTATCTTTCACCCGGGCGTAATTTCAACAGTTTAAGGTACGATCCATTCCGTGCTCTCAATTCTTCTATAAAACTTGAGTTGTATAAGAAAATAGAATGAATGTCTGTCTTTTTATTCATACAAGATTCTTTTTTGCTCCCTGCAGAGGCTGCTCGCTAAGTATGGCTCCCTGATCTCGGTGGTCTCCTTCGTCGTTCTGTTCGTCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAATCGCTGACTGGGAAGTAGTTCTTAGCTGTGTTTTACTTTTGATCCGCCACCCAAATTGAGAATATGTTTGGTTGATATATTTGTTGGGTTAGCACAAAGGTACAGAAACTTCTTGAGTTGATAGTTTTTGTTCATCCCTAATGAGTAGTAGAGCCGGAGGAAACAGAGCTAATTATAGACACGCACGAGAGTCAGTTAAACACATGGTCCAGTAGTTGAGCTGTTTGTTTTAAAGTCATGTCGGATTTGTTCATCATATTACTCACTTGTTTCTTCTTTCCTAGACATGATTCTGAATCCCATTTTCTTTGCCTTATGTTCGTTCTGGACAAATCTGAGGGGGATCATTCTCGGGGCGGTCGATGATGACTTCCCGTTCCTATTTGCCCCTCGTCCAATTCCCCGTTAAATTGTATGATCGGTTCCCGCCCCTGTTATTGTCTTGCCCCTCGTCCAATTCCCCGTTAAATTGTATGATCAGTTCCCATCCCTATTATTGTCTTGCCCCTTGTCTATTTCCCATTAAATTGTAGGATCGTTCCCGATCTTGCCTTGCCCCTCATTTGATTCCCTGTTGAGACCGTTGGATTGGTGTGATGACAATTCCCCGTTACCTCTTCCGACGACGACAATGATTTCTTAACATTCGGACGACAATGGTGTGGTTTAGGGTTCAACTTTTCAGCAATCAATTCCTCCTTAAATTAATGCTAACAATGTGAAATTTATACTCAATTGTCGACACTTTTTTTTTAATTCCTTTTTCTATAAAT

mRNA sequence

ATATGTTCTCTGATTGTTCCACACTTTTGCGTACCTATTTTATCCGACGGCTCCTTCTTCTGAAAGTCCCATTTCGTCTCGGCCGATCATCTATCTCTGTGGCCTAATCCTGACGATTTCATGGCGAATCTGATTCAGGCTCGTTTGATCCATCTCCTCCTGGCTTTGCTGTTCGTCTCGTCAACGATCGCAAGCTCCGATGTCCCGTTCATTGTCGCGCACAAGAAGGCGACGCTCACTCGTCTCAAATCCGGCGTCGAACGCGTCTCGGTCTCAATCGAAATTTACAATCAGGGATCTTCGACCGCATATGATGTTACTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATATTGTCAGTGGCGAGACATCCAAATCGTGGGAAAGACTCGATGCTGGTGGTCATTTATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCTGTTATCACGTTCCGTGTCCCTACGAAGTCTGCTTTACAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGATAGGCCACCAGAGAAGAAGTTTGAGTGGTTTAAGAGGCTGCTCGCTAAGTATGGCTCCCTGATCTCGGTGGTCTCCTTCGTCGTTCTGTTCGTCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAATCGCTGACTGGGAAGTAGTTCTTAGCTGTGTTTTACTTTTGATCCGCCACCCAAATTGAGAATATGTTTGGTTGATATATTTGTTGGGTTAGCACAAAGGTACAGAAACTTCTTGAGTTGATAGTTTTTGTTCATCCCTAATGAGTAGTAGAGCCGGAGGAAACAGAGCTAATTATAGACACGCACGAGAGTCAGTTAAACACATGGTCCAGTAGTTGAGCTGTTTGTTTTAAAGTCATGTCGGATTTGTTCATCATATTACTCACTTGTTTCTTCTTTCCTAGACATGATTCTGAATCCCATTTTCTTTGCCTTATGTTCGTTCTGGACAAATCTGAGGGGGATCATTCTCGGGGCGGTCGATGATGACTTCCCGTTCCTATTTGCCCCTCGTCCAATTCCCCGTTAAATTGTATGATCGGTTCCCGCCCCTGTTATTGTCTTGCCCCTCGTCCAATTCCCCGTTAAATTGTATGATCAGTTCCCATCCCTATTATTGTCTTGCCCCTTGTCTATTTCCCATTAAATTGTAGGATCGTTCCCGATCTTGCCTTGCCCCTCATTTGATTCCCTGTTGAGACCGTTGGATTGGTGTGATGACAATTCCCCGTTACCTCTTCCGACGACGACAATGATTTCTTAACATTCGGACGACAATGGTGTGGTTTAGGGTTCAACTTTTCAGCAATCAATTCCTCCTTAAATTAATGCTAACAATGTGAAATTTATACTCAATTGTCGACACTTTTTTTTTAATTCCTTTTTCTATAAAT

Coding sequence (CDS)

ATGGCGAATCTGATTCAGGCTCGTTTGATCCATCTCCTCCTGGCTTTGCTGTTCGTCTCGTCAACGATCGCAAGCTCCGATGTCCCGTTCATTGTCGCGCACAAGAAGGCGACGCTCACTCGTCTCAAATCCGGCGTCGAACGCGTCTCGGTCTCAATCGAAATTTACAATCAGGGATCTTCGACCGCATATGATGTTACTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATATTGTCAGTGGCGAGACATCCAAATCGTGGGAAAGACTCGATGCTGGTGGTCATTTATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCTGTTATCACGTTCCGTGTCCCTACGAAGTCTGCTTTACAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGATAGGCCACCAGAGAAGAAGTTTGAGTGGTTTAAGAGGCTGCTCGCTAAGTATGGCTCCCTGATCTCGGTGGTCTCCTTCGTCGTTCTGTTCGTCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAA

Protein sequence

MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVASPSKSAAKGSKKKR
Homology
[Close]
BLAST of CmaCh14G007530 vs. ExPASy Swiss-Prot
Match: Q5E9E4 (Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-07
Identity = 34/117 (29.06%), Postives = 58/117 (49.57%), Query Frame = 0 

Query: 36  KATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDASWPGDVFDIVSGETSKSWERLDAG 95
           K+ L R       +++   IYN GSS A DV L+D S+P + F IVSG  +  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 96  GHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF 153
            ++SH+  L     G F+ + A +T+       +    ++      +LA R  +++F
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPVVIGFTSAPGQGGILAQREFDRRF 143

[Close]
BLAST of CmaCh14G007530 vs. ExPASy Swiss-Prot
Match: P23438 (Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 37/143 (25.87%), Postives = 69/143 (48.25%), Query Frame = 0 

Query: 10  IHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLN 69
           + LL ++L     ++ ++    +   K+ L R       +++   IYN GSS A DV L+
Sbjct: 1   MRLLASVLLALFAVSHAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 70  DASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSAL 129
           D S+P + F IVSG  +  W+R+    ++SH+  L     G F+ + A +T+       +
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPV 120

Query: 130 QEALSTPILPLDVLADRPPEKKF 153
               ++      +LA R  +++F
Sbjct: 121 VIGFTSAPGQGGILAQREFDRRF 143

[Close]
BLAST of CmaCh14G007530 vs. ExPASy Swiss-Prot
Match: Q9CPW5 (Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06
Identity = 33/112 (29.46%), Postives = 57/112 (50.89%), Query Frame = 0 

Query: 10  IHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLN 69
           + LL  ++     ++ ++    +   K+ L R       +++   IYN GSS A DV L+
Sbjct: 1   MRLLAVVVLALLAVSQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 70  DASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITF 122
           D S+P + F IVSG  +  W+R+    ++SH+  L     G F+ + A IT+
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]
BLAST of CmaCh14G007530 vs. ExPASy Swiss-Prot
Match: P43308 (Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-06
Identity = 35/114 (30.70%), Postives = 58/114 (50.88%), Query Frame = 0 

Query: 8   RLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVT 67
           RL+  ++  LF    +  ++    +   K+ L R       +++   IYN GSS A DV 
Sbjct: 2   RLLSFVVLALF---AVTQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVE 61

Query: 68  LNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITF 122
           L+D S+P + F IVSG  +  W+R+    ++SH+  L     G F+ + A IT+
Sbjct: 62  LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]
BLAST of CmaCh14G007530 vs. ExPASy TrEMBL
Match: A0A6J1J5V1 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]
BLAST of CmaCh14G007530 vs. ExPASy TrEMBL
Match: A0A6J1J7C6 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.8e-98
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVSFVVLFVYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]
BLAST of CmaCh14G007530 vs. ExPASy TrEMBL
Match: A0A6J1FAK9 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111442301 PE=3 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.3e-97
Identity = 192/194 (98.97%), Postives = 192/194 (98.97%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MANLIQARLIHLLLA LFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS
Sbjct: 1   MANLIQARLIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVSFVVLFVYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]
BLAST of CmaCh14G007530 vs. ExPASy TrEMBL
Match: A0A6J1DQQ5 (Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC111023364 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.7e-89
Identity = 176/194 (90.72%), Postives = 184/194 (94.85%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MAN IQ+ LI LL ALLFV+STIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+LNDASWP DVFDI+SGETSKSWERLDAG HLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEA STPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVS VVLF+YLVA
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIVVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]
BLAST of CmaCh14G007530 vs. ExPASy TrEMBL
Match: A0A0A0LBA3 (Translocon-associated protein subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G597330 PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.8e-87
Identity = 168/186 (90.32%), Postives = 180/186 (96.77%), Query Frame = 0 

Query: 9   LIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68
           +IHLL A LF+SSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGSSTAYDV+L
Sbjct: 5   MIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 64

Query: 69  NDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSA 128
           NDASWPGD+FDIVSGETS SWERLDAGGH+SHSFELEAK++GMFHGSPAVITFRVPTKSA
Sbjct: 65  NDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSRGMFHGSPAVITFRVPTKSA 124

Query: 129 LQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVASPSKSAAK 188
           LQEALSTPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVS +VLF+YLVASPSKSAAK
Sbjct: 125 LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIYLVASPSKSAAK 184

Query: 189 GSKKKR 195
           GSKKKR
Sbjct: 185 GSKKKR 190

[Close]
BLAST of CmaCh14G007530 vs. NCBI nr
Match: XP_022983435.1 (translocon-associated protein subunit beta isoform X2 [Cucurbita maxima])

HSP 1 Score: 369.0 bits (946), Expect = 2.5e-98
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]
BLAST of CmaCh14G007530 vs. NCBI nr
Match: XP_022983434.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita maxima])

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-97
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVSFVVLFVYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]
BLAST of CmaCh14G007530 vs. NCBI nr
Match: XP_022935419.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_022935420.1 translocon-associated protein subunit beta isoform X2 [Cucurbita moschata])

HSP 1 Score: 364.8 bits (935), Expect = 4.7e-97
Identity = 192/194 (98.97%), Postives = 192/194 (98.97%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MANLIQARLIHLLLA LFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS
Sbjct: 1   MANLIQARLIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVSFVVLFVYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]
BLAST of CmaCh14G007530 vs. NCBI nr
Match: KAG6581125.1 (Translocon-associated protein subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 362.8 bits (930), Expect = 1.8e-96
Identity = 191/194 (98.45%), Postives = 191/194 (98.45%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MANLIQARLIHLLLA LFVSSTIASSDVPFIVAHKKATL RLKSGVERVSVSIEIYNQGS
Sbjct: 1   MANLIQARLIHLLLAFLFVSSTIASSDVPFIVAHKKATLARLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVSFVVLFVYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]
BLAST of CmaCh14G007530 vs. NCBI nr
Match: KAG7017859.1 (Translocon-associated protein subunit beta [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 358.2 bits (918), Expect = 4.4e-95
Identity = 191/194 (98.45%), Postives = 191/194 (98.45%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MANLIQARLIHLLLA LFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS
Sbjct: 1   MANLIQARLIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEW  RLLAKYGSLISVVSFVVLFVYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEW--RLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 192

[Close]
BLAST of CmaCh14G007530 vs. TAIR 10
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 248.1 bits (632), Expect = 6.0e-66
Identity = 125/194 (64.43%), Postives = 154/194 (79.38%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MA  +   LI  +   + VS++ A+S+VPF+V HKKATL RLKSG ERVSVS +IYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           S+AYDVTL D SW    F++V+G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAV+T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FR+PTK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S VV F+YLVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]
BLAST of CmaCh14G007530 vs. TAIR 10
Match: AT5G14030.2 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 248.1 bits (632), Expect = 6.0e-66
Identity = 125/194 (64.43%), Postives = 154/194 (79.38%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MA  +   LI  +   + VS++ A+S+VPF+V HKKATL RLKSG ERVSVS +IYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           S+AYDVTL D SW    F++V+G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAV+T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FR+PTK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S VV F+YLVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]
BLAST of CmaCh14G007530 vs. TAIR 10
Match: AT5G14030.3 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 248.1 bits (632), Expect = 6.0e-66
Identity = 125/194 (64.43%), Postives = 154/194 (79.38%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MA  +   LI  +   + VS++ A+S+VPF+V HKKATL RLKSG ERVSVS +IYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           S+AYDVTL D SW    F++V+G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAV+T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FR+PTK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S VV F+YLVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]
BLAST of CmaCh14G007530 vs. TAIR 10
Match: AT5G14030.4 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 248.1 bits (632), Expect = 6.0e-66
Identity = 125/194 (64.43%), Postives = 154/194 (79.38%), Query Frame = 0 

Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MA  +   LI  +   + VS++ A+S+VPF+V HKKATL RLKSG ERVSVS +IYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           S+AYDVTL D SW    F++V+G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAV+T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FR+PTK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S VV F+YLVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

The following BLAST results are available for this feature:
BLAST of CmaCh14G007530 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5E9E43.6e-0729.06Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV... [more]
P234381.0e-0625.87Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=... [more]
Q9CPW51.8e-0629.46Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1... [more]
P433083.0e-0630.70Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 ... [more]
BLAST of CmaCh14G007530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J5V11.2e-98100.00Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1J7C67.8e-9899.48Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1FAK92.3e-9798.97Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1DQQ58.7e-8990.72Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A0A0LBA34.8e-8790.32Translocon-associated protein subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G5... [more]
BLAST of CmaCh14G007530 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022983435.12.5e-98100.00translocon-associated protein subunit beta isoform X2 [Cucurbita maxima][more]
XP_022983434.11.6e-9799.48translocon-associated protein subunit beta isoform X1 [Cucurbita maxima][more]
XP_022935419.14.7e-9798.97translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_0... [more]
KAG6581125.11.8e-9698.45Translocon-associated protein subunit beta, partial [Cucurbita argyrosperma subs... [more]
KAG7017859.14.4e-9598.45Translocon-associated protein subunit beta [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh14G007530 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G14030.16.0e-6664.43translocon-associated protein beta (TRAPB) family protein [more]
AT5G14030.26.0e-6664.43translocon-associated protein beta (TRAPB) family protein [more]
AT5G14030.36.0e-6664.43translocon-associated protein beta (TRAPB) family protein [more]
AT5G14030.46.0e-6664.43translocon-associated protein beta (TRAPB) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF05753TRAP_betacoord: 16..190
e-value: 1.8E-52
score: 177.3
NoneNo IPR availablePANTHERPTHR12861TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNITcoord: 9..193
NoneNo IPR availablePANTHERPTHR12861:SF7TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT BETA-LIKEcoord: 9..193
IPR008856Translocon-associated protein subunit betaPIRSFPIRSF016400TRAP-betacoord: 6..194
e-value: 1.2E-58
score: 195.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G007530.1CmaCh14G007530.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005783 endoplasmic reticulum