CmaCh14G006190 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G006190
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	myosin-4-like isoform X3
Location	Cma_Chr14: 3056006 .. 3056312 (-)
RNA-Seq Expression	CmaCh14G006190
Synteny	CmaCh14G006190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACTGCGATCTGAGCTGGAAGTGGCCAATGTGGAGCTCGAAAATGTCAAGCGCGTCAAAGAAACCACTGAACAAGAGCTTAAAGGCTGTGAAGTTGAATTGTCTTTGAATGAGACTGCAATTCAGACTCTCGAAGTTCTATTTCTATTTCTCTTACATTTCACTTCTATAATTGCATCACCGTTATTTGTTCTTTTGCTTCTTAAATTTGATTTATCCACTCCAGGCAAGAATCTCCGTGCTGCAAGGTGAAATTGCATCTGTTGGATCTGAGTTAGACTCTCTGAAGGTACTGAGTTGA

mRNA sequence

ATGGAAGAACTGCGATCTGAGCTGGAAGTGGCCAATGTGGAGCTCGAAAATGTCAAGCGCGTCAAAGAAACCACTGAACAAGAGCTTAAAGGCTGTGAAGTTGAATTGTCTTTGAATGAGACTGCAATTCAGACTCTCGAAGCAAGAATCTCCGTGCTGCAAGGTGAAATTGCATCTGTTGGATCTGAGTTAGACTCTCTGAAGGTACTGAGTTGA

Coding sequence (CDS)

ATGGAAGAACTGCGATCTGAGCTGGAAGTGGCCAATGTGGAGCTCGAAAATGTCAAGCGCGTCAAAGAAACCACTGAACAAGAGCTTAAAGGCTGTGAAGTTGAATTGTCTTTGAATGAGACTGCAATTCAGACTCTCGAAGCAAGAATCTCCGTGCTGCAAGGTGAAATTGCATCTGTTGGATCTGAGTTAGACTCTCTGAAGGTACTGAGTTGA

Protein sequence

MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASVGSELDSLKVLS

Homology

[Close]

BLAST of CmaCh14G006190 vs. ExPASy TrEMBL
Match: A0A6J1J8W6 (uncharacterized protein LOC111482344 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111482344 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60
          MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV
Sbjct: 1  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60

Query: 61 GSELDSLKV 70
          GSELDSLKV
Sbjct: 61 GSELDSLKV 69

[Close]

BLAST of CmaCh14G006190 vs. ExPASy TrEMBL
Match: A0A6J1J734 (uncharacterized protein LOC111482344 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111482344 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60
           MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV
Sbjct: 46  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 105

Query: 61  GSELDSLKV 70
           GSELDSLKV
Sbjct: 106 GSELDSLKV 114

[Close]

BLAST of CmaCh14G006190 vs. ExPASy TrEMBL
Match: A0A6J1J3I9 (uncharacterized protein LOC111482344 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482344 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60
           MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV
Sbjct: 46  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 105

Query: 61  GSELDSLKV 70
           GSELDSLKV
Sbjct: 106 GSELDSLKV 114

[Close]

BLAST of CmaCh14G006190 vs. ExPASy TrEMBL
Match: A0A6J1J729 (uncharacterized protein LOC111482344 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482344 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60
           MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV
Sbjct: 46  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 105

Query: 61  GSELDSLKV 70
           GSELDSLKV
Sbjct: 106 GSELDSLKV 114

[Close]

BLAST of CmaCh14G006190 vs. ExPASy TrEMBL
Match: A0A6J1J3J3 (uncharacterized protein LOC111482344 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111482344 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60
           MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV
Sbjct: 46  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 105

Query: 61  GSELDSLKV 70
           GSELDSLKV
Sbjct: 106 GSELDSLKV 114

[Close]

BLAST of CmaCh14G006190 vs. NCBI nr
Match: XP_022983850.1 (uncharacterized protein LOC111482344 isoform X1 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 8.7e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60
           MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV
Sbjct: 46  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 105

Query: 61  GSELDSLKV 70
           GSELDSLKV
Sbjct: 106 GSELDSLKV 114

[Close]

BLAST of CmaCh14G006190 vs. NCBI nr
Match: XP_022983856.1 (uncharacterized protein LOC111482344 isoform X5 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 8.7e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60
           MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV
Sbjct: 46  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 105

Query: 61  GSELDSLKV 70
           GSELDSLKV
Sbjct: 106 GSELDSLKV 114

[Close]

BLAST of CmaCh14G006190 vs. NCBI nr
Match: XP_022983853.1 (uncharacterized protein LOC111482344 isoform X3 [Cucurbita maxima] >XP_022983854.1 uncharacterized protein LOC111482344 isoform X3 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 8.7e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60
          MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV
Sbjct: 1  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60

Query: 61 GSELDSLKV 70
          GSELDSLKV
Sbjct: 61 GSELDSLKV 69

[Close]

BLAST of CmaCh14G006190 vs. NCBI nr
Match: XP_022983855.1 (uncharacterized protein LOC111482344 isoform X4 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 8.7e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60
           MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV
Sbjct: 46  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 105

Query: 61  GSELDSLKV 70
           GSELDSLKV
Sbjct: 106 GSELDSLKV 114

[Close]

BLAST of CmaCh14G006190 vs. NCBI nr
Match: XP_022983851.1 (uncharacterized protein LOC111482344 isoform X2 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 8.7e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60
           MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV
Sbjct: 46  MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 105

Query: 61  GSELDSLKV 70
           GSELDSLKV
Sbjct: 106 GSELDSLKV 114

[Close]

BLAST of CmaCh14G006190 vs. TAIR 10
Match: AT3G28370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 6174 Blast hits to 4953 proteins in 685 species: Archae - 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants - 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-15
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MEELRSELEVANVELENVKRVKETTEQELKGCEVELSLNETAIQTLEARISVLQGEIASV 60
           +E L+SE+E AN E+E  KR+KE  E+EL G EVELSLN+  IQ+LEARIS+LQ E+ ++
Sbjct: 35  IEILQSEVEAANSEVEKAKRIKEVAEEELNGYEVELSLNDATIQSLEARISLLQDEVTTI 94

Query: 61  GSELDSLK 69
           GSE+D+LK
Sbjct: 95  GSEVDALK 102

[Close]

BLAST of CmaCh14G006190 vs. TAIR 10
Match: AT1G51430.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28370.1); Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.0 bits (92), Expect = 9.1e-04
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 35 ELSLNETAIQTLEARISVLQGEIASVGSELDSLK 69
          ELSLN+  IQ+LEARIS+LQ E+++ G E D+LK
Sbjct: 59 ELSLNDFTIQSLEARISLLQDEVSTNGIEDDALK 92

The following BLAST results are available for this feature:

BLAST of CmaCh14G006190 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G006190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J8W6	4.2e-25	100.00	uncharacterized protein LOC111482344 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J734	4.2e-25	100.00	uncharacterized protein LOC111482344 isoform X4 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J3I9	4.2e-25	100.00	uncharacterized protein LOC111482344 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J729	4.2e-25	100.00	uncharacterized protein LOC111482344 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J3J3	4.2e-25	100.00	uncharacterized protein LOC111482344 isoform X5 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmaCh14G006190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983850.1	8.7e-25	100.00	uncharacterized protein LOC111482344 isoform X1 [Cucurbita maxima]	[more]
XP_022983856.1	8.7e-25	100.00	uncharacterized protein LOC111482344 isoform X5 [Cucurbita maxima]	[more]
XP_022983853.1	8.7e-25	100.00	uncharacterized protein LOC111482344 isoform X3 [Cucurbita maxima] >XP_022983854...	[more]
XP_022983855.1	8.7e-25	100.00	uncharacterized protein LOC111482344 isoform X4 [Cucurbita maxima]	[more]
XP_022983851.1	8.7e-25	100.00	uncharacterized protein LOC111482344 isoform X2 [Cucurbita maxima]	[more]

BLAST of CmaCh14G006190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28370.1	2.3e-15	60.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G51430.1	9.1e-04	61.76	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..35
None	No IPR available	GENE3D	1.20.5.340		coord: 1..69 e-value: 1.9E-6 score: 29.9
None	No IPR available	PANTHER	PTHR36001	CTAGE FAMILY PROTEIN-RELATED	coord: 2..69
None	No IPR available	SUPERFAMILY	57997	Tropomyosin	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G006190.1	CmaCh14G006190.1	mRNA