CmaCh14G005310 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G005310
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionATP-dependent RNA helicase DBP3-like
LocationCma_Chr14: 2642128 .. 2642391 (+)
RNA-Seq ExpressionCmaCh14G005310
SyntenyCmaCh14G005310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGGATGATGAACAAGATCCAAGAAACGCTGCACCGCCGTCAGAAGCAGCCGCACGACGGAGAGGAGAAAGACGGCGGCGGGATTGTGGAGAGGATGAAGGAGAAGATCCATGGCTACAAGGAGAAGAAGCAAGAGAAGAAGAAGCAGAAGAAGGAGAAGAAGGAGAAGAAGAAAAAGGAGGAAAAATCTAAAGAAGAAGAAGATGGCGGCGGCCACAGCAGCGACAGCGACTCCGACAGTGGCAGCGGAAGCGATTAG

mRNA sequence

ATGTCAGGGATGATGAACAAGATCCAAGAAACGCTGCACCGCCGTCAGAAGCAGCCGCACGACGGAGAGGAGAAAGACGGCGGCGGGATTGTGGAGAGGATGAAGGAGAAGATCCATGGCTACAAGGAGAAGAAGCAAGAGAAGAAGAAGCAGAAGAAGGAGAAGAAGGAGAAGAAGAAAAAGGAGGAAAAATCTAAAGAAGAAGAAGATGGCGGCGGCCACAGCAGCGACAGCGACTCCGACAGTGGCAGCGGAAGCGATTAG

Coding sequence (CDS)

ATGTCAGGGATGATGAACAAGATCCAAGAAACGCTGCACCGCCGTCAGAAGCAGCCGCACGACGGAGAGGAGAAAGACGGCGGCGGGATTGTGGAGAGGATGAAGGAGAAGATCCATGGCTACAAGGAGAAGAAGCAAGAGAAGAAGAAGCAGAAGAAGGAGAAGAAGGAGAAGAAGAAAAAGGAGGAAAAATCTAAAGAAGAAGAAGATGGCGGCGGCCACAGCAGCGACAGCGACTCCGACAGTGGCAGCGGAAGCGATTAG

Protein sequence

MSGMMNKIQETLHRRQKQPHDGEEKDGGGIVERMKEKIHGYKEKKQEKKKQKKEKKEKKKKEEKSKEEEDGGGHSSDSDSDSGSGSD
Homology
BLAST of CmaCh14G005310 vs. ExPASy TrEMBL
Match: A0A0A0LCI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822295 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 0

Query: 1  MSGMMNKIQETLHRRQKQPHDGEE--KDGGGIVERMKEKIHGYKEKKQEKKKQKKEKKEK 60
          M+G+M KIQET+   +KQ HDGE    +G GIVE+MKEKIHGYKEK +EKKKQ+KE+KEK
Sbjct: 1  MAGIMKKIQETVQSHKKQ-HDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEK 60

Query: 61 KKKEEKSK---------EEEDGGGHSSDSDS-DSGSGSD 88
          K+KE+K K         EEE+ GG SSD DS DSG GSD
Sbjct: 61 KEKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD 98

BLAST of CmaCh14G005310 vs. ExPASy TrEMBL
Match: A0A1S4DVB9 (ATP-dependent RNA helicase DBP3-like OS=Cucumis melo OX=3656 GN=LOC107990607 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 0

Query: 1  MSGMMNKIQETLHRRQKQPHDGEE-KDGGGIVERMKEKIHGYKEKKQEKKKQKKEKKEKK 60
          M+G+M KI+ET+   +KQ HDGE   +GGGIVE+MKEKIHGYKEK +EKKKQ+KE+KEKK
Sbjct: 1  MAGIMKKIKETVQSHKKQ-HDGENGAEGGGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK 60

Query: 61 KKEE----KSKEEEDGGGHSSDSDSDSGSGSD 88
          +KE+    K+K EEDGG  S     DSG GSD
Sbjct: 61 EKEKEKKAKAKAEEDGGESSDGDSDDSGGGSD 91

BLAST of CmaCh14G005310 vs. NCBI nr
Match: KAG6580907.1 (hypothetical protein SDJN03_20909, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 3.1e-16
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0

Query: 20 HDGEEKDGGGIVERMKEKIHGYKEKKQEKKKQKKEKKEKKKKEEKSKEEEDGGGHSSDSD 79
          H+GEEKDGGGIVERMKEKIHGYKEKKQEK+KQ+KEKKE+KKKEEK KEEEDGGGHSSDSD
Sbjct: 23 HEGEEKDGGGIVERMKEKIHGYKEKKQEKRKQRKEKKERKKKEEKCKEEEDGGGHSSDSD 82

Query: 80 SDSGSGSD 88
          S+SG GSD
Sbjct: 83 SNSGGGSD 90

BLAST of CmaCh14G005310 vs. NCBI nr
Match: XP_031737596.1 (dehydrin HIRD11-like [Cucumis sativus] >KGN59478.1 hypothetical protein Csa_001113 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-09
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 0

Query: 1  MSGMMNKIQETLHRRQKQPHDGEE--KDGGGIVERMKEKIHGYKEKKQEKKKQKKEKKEK 60
          M+G+M KIQET+   +KQ HDGE    +G GIVE+MKEKIHGYKEK +EKKKQ+KE+KEK
Sbjct: 1  MAGIMKKIQETVQSHKKQ-HDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEK 60

Query: 61 KKKEEKSK---------EEEDGGGHSSDSDS-DSGSGSD 88
          K+KE+K K         EEE+ GG SSD DS DSG GSD
Sbjct: 61 KEKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD 98

BLAST of CmaCh14G005310 vs. NCBI nr
Match: XP_016899655.1 (PREDICTED: ATP-dependent RNA helicase DBP3-like [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 4.8e-09
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 0

Query: 1  MSGMMNKIQETLHRRQKQPHDGEE-KDGGGIVERMKEKIHGYKEKKQEKKKQKKEKKEKK 60
          M+G+M KI+ET+   +KQ HDGE   +GGGIVE+MKEKIHGYKEK +EKKKQ+KE+KEKK
Sbjct: 1  MAGIMKKIKETVQSHKKQ-HDGENGAEGGGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK 60

Query: 61 KKEE----KSKEEEDGGGHSSDSDSDSGSGSD 88
          +KE+    K+K EEDGG  S     DSG GSD
Sbjct: 61 EKEKEKKAKAKAEEDGGESSDGDSDDSGGGSD 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCI31.8e-0961.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822295 PE=4 SV=1[more]
A0A1S4DVB92.3e-0961.96ATP-dependent RNA helicase DBP3-like OS=Cucumis melo OX=3656 GN=LOC107990607 PE=... [more]
Match NameE-valueIdentityDescription
KAG6580907.13.1e-1689.71hypothetical protein SDJN03_20909, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_031737596.13.7e-0961.62dehydrin HIRD11-like [Cucumis sativus] >KGN59478.1 hypothetical protein Csa_0011... [more]
XP_016899655.14.8e-0961.96PREDICTED: ATP-dependent RNA helicase DBP3-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 31..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G005310.1CmaCh14G005310.1mRNA