CmaCh14G005230 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G005230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr14: 2593652 .. 2594250 (-)
RNA-Seq Expression	CmaCh14G005230
Synteny	CmaCh14G005230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAATAGCAGACAATATTCTACCTCAAAGCTTCAAAGATGCCCATATCAGAAGCAAAACAAGACCATCACCCACCAGGTTATTTCTCTCTTCCTCTCCCTCAAAGTTTTCACACTGTCTCTCAATCTAACTGTTGAAAACTATAGGGCACCCGACCAAGGATGCCGGGACAGGCAGGAAGAAACGGTTCTGGGACACTACAAAGAAACGAGGAGATAGAAGTTTTATTGAAGGATGGTGAGTATTTTCACTATCCTTTTCATTTTTTTTTCCTCTCACTTTTCACTTAAGGAAAAACCAAATGTTACCTGATAAACTTGTGGATTGGATGCAGTCTTTTTGCATTGTGCTGCTGTTGGCTTTGTGAGGCATGCTGCTGATTCTCCTGGGTGATTGTTCTGTTTATTGTAATTAGTGTAACATAAGTTTCATCAATATCAGCAACAAGTGATCTAGTGTATTGCATAAATCAACTTTTATCTATGAGATAGAGACTTGCACCTGTACTTGCCTAAGATTTTCTTGAGCATATACAAGTTTTATACCTGATTCTGATTATATCATTATTCCTTTGTACCAAAAAGGCCAATCTTTCT

mRNA sequence

ATGGGTAATAGCAGACAATATTCTACCTCAAAGCTTCAAAGATGCCCATATCAGAAGCAAAACAAGACCATCACCCACCAGGGCACCCGACCAAGGATGCCGGGACAGGCAGGAAGAAACGGTTCTGGGACACTACAAAGAAACGAGGAGATAGAAGTTTTATTGAAGGATGTCTTTTTGCATTGTGCTGCTGTTGGCTTTGTGAGGCATGCTGCTGATTCTCCTGGGTGATTGTTCTGTTTATTGTAATTAGTGTAACATAAGTTTCATCAATATCAGCAACAAGTGATCTAGTGTATTGCATAAATCAACTTTTATCTATGAGATAGAGACTTGCACCTGTACTTGCCTAAGATTTTCTTGAGCATATACAAGTTTTATACCTGATTCTGATTATATCATTATTCCTTTGTACCAAAAAGGCCAATCTTTCT

Coding sequence (CDS)

ATGGGTAATAGCAGACAATATTCTACCTCAAAGCTTCAAAGATGCCCATATCAGAAGCAAAACAAGACCATCACCCACCAGGGCACCCGACCAAGGATGCCGGGACAGGCAGGAAGAAACGGTTCTGGGACACTACAAAGAAACGAGGAGATAGAAGTTTTATTGAAGGATGTCTTTTTGCATTGTGCTGCTGTTGGCTTTGTGAGGCATGCTGCTGATTCTCCTGGGTGA

Protein sequence

MGNSRQYSTSKLQRCPYQKQNKTITHQGTRPRMPGQAGRNGSGTLQRNEEIEVLLKDVFLHCAAVGFVRHAADSPG

Homology

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BLAST of CmaCh14G005230 vs. NCBI nr
Match: KAG6580900.1 (hypothetical protein SDJN03_20902, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 6.5e-18
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 28 GTRPRMPGQAGRNGSGTLQRNEEIEVLLKDVFLHCAAVGFVRHAADSPG 77
          G RPRMPGQAGRNGSGTLQRNEEIEVLLKDVFLHCAAVGFVRHAAD PG
Sbjct: 43 GIRPRMPGQAGRNGSGTLQRNEEIEVLLKDVFLHCAAVGFVRHAADPPG 91

The following BLAST results are available for this feature:

BLAST of CmaCh14G005230 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G005230 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G005230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580900.1	6.5e-18	95.92	hypothetical protein SDJN03_20902, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh14G005230 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G005230.1	CmaCh14G005230.1	mRNA