CmaCh14G004950 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G004950
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 2423629 .. 2425327 (+)
RNA-Seq ExpressionCmaCh14G004950
SyntenyCmaCh14G004950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGGCAGCGCGTGGAGTACACGAATTTTGTCAGAAGAGGAGTGAGAGTGGGGAAGGTAGAGATGTGTTGAGACAACCAATCATTTGAATGTCTTGGGTCTTCTCTCAGGGGTTGTTCTGGCTACGACGACGGCTCCTAGTACTAGGATTTTTATGGCGCGTGTACTACACGTACCAATGGCGTTTTTAAAAATAATTTTAATATTGGTATGTCATTTTTAAAGAATTTGATCGACTTAATGAGATTTAAGTTGAATTAATAATTTTCTAAAATTTTATAATTATTCATTTTCCAATCCCTCTCAATTTTTTTTTAATATATATATTGAAATTAAATTATAAATTTTAATTAAAGATTTGAAAATAAATAAATAAACCAAATAAATGGAAGGATTCATATTATTATATATATATATATAGTATAAAATAAATTAAAATTTTAATCTAAACTTTTATAGCACGTGATAAATAAGAATAAATAATTTAATTTATTTTTTATTTTTTAATTTAAAAAGATGATGAATTTTATTTCAATTTTGTCTTAATTTTAGAAAACCTTCAACAAAATTATGAGAATTATTTGTTATTTAGTTGATTTTTCGAAAATTTCAATATTTTTTTTGGTTATTATCTCTGAGATCAGGCCCTCTTCATTCTCCATGACTCTTCAACTATTTCTCCATTGTTCTAGCGTCTTTAGACTCGAATTTCAGATTCTGAAACAATTTCTCTTTAATCTCTCGGACCTCCGGTAAGAAATCTGGCAACGCATCGGTGTGGAGTCCGGTACGATCCGCTTCAATCGATCGGAGCGACGAAGAGGAAGAGAATTCCGGGGATTTTCTCGCTTGGATCATTGCGCATTTTGAAGAACAAATAATGGAACGAAATTGCGGTACGGTCTCGTTCAATCGTAGAGGAGAACCTTCACATTAGATGCTAATCTCTCCATTTCGCAGTCTCTGTCTCCCCATGTTTGATCAGATCCTCCTCTGAAGGTATGTCGATTGGCGATTCCCGATATGAGTTTCCTGAACTGGAGAGAGTAAATGCTTCCATGTTTCATGCATAATTCCTTTGACATGTGCGCATTTAGGTATTCTGTTCAATTTTCGATATGGATTTCGATTGTTCTGTAATTCAACGAATGATTTTAGGTTGTAAGAGTAAAACTTCAGGAGATTATTAAAATTAAACGTATGTTCATGTTCGATTTTCGGTTTACATTGATGATATCGTCTGTTTTTCAAGTCGCTCTCATATTCTAAGAATGTTCACCCAAGTCTTTTTGTACTTTTGTGAAGATGCTTATATAAAATAATGGCTTCTAACTTCGTTTTATTCTCCACAAGTTTCCATAGCCTTTTCTTAATTCTCTCTCTTCCCTGAAAATCACACATCGTTCAATATATTTCTAAATTCAAGTGCACGCCTCTGATTGTTTTTGGTTTCTCAATTTTCCCAGTTTTCATCAAAGTCGGTTATGGGGCACTGAATTCATATTCCATAATTGAGGGATCATGTTCTACAACCCTTCCTTGCTATAGTATGTTTTCTTCCATCTACTTACTTCATTATAATGTGGACTGTAACGCTCCACATCTCCAGTTTAGCTCATTTCTTTAATTGCCGCCTTGAAATTTTCTTTCAAAATTGTTAGAATCGGAGAGAACTATAAGTTCAACACAACTTTGA

mRNA sequence

ATGGATTGGCAGCGCGTGGAGTACACGAATTTTGTCAGAAGAGGAGTGAGAGTGGGGAAGAAATCTGGCAACGCATCGGTGTGGAGTCCGGTACGATCCGCTTCAATCGATCGGAGCGACGAAGAGGAAGAGAATTCCGGGGATTTTCTCGCTTGGATCATTGCGCATTTTGAAGAACAAATAATGGAACGAAATTGCGTCTCTGTCTCCCCATGTTTGATCAGATCCTCCTCTGAAGTTTTCATCAAAGTCGGTTATGGGGCACTGAATTCATATTCCATAATTGAGGGATCATGTTCTACAACCCTTCCTTGCTATAAATCGGAGAGAACTATAAGTTCAACACAACTTTGA

Coding sequence (CDS)

ATGGATTGGCAGCGCGTGGAGTACACGAATTTTGTCAGAAGAGGAGTGAGAGTGGGGAAGAAATCTGGCAACGCATCGGTGTGGAGTCCGGTACGATCCGCTTCAATCGATCGGAGCGACGAAGAGGAAGAGAATTCCGGGGATTTTCTCGCTTGGATCATTGCGCATTTTGAAGAACAAATAATGGAACGAAATTGCGTCTCTGTCTCCCCATGTTTGATCAGATCCTCCTCTGAAGTTTTCATCAAAGTCGGTTATGGGGCACTGAATTCATATTCCATAATTGAGGGATCATGTTCTACAACCCTTCCTTGCTATAAATCGGAGAGAACTATAAGTTCAACACAACTTTGA

Protein sequence

MDWQRVEYTNFVRRGVRVGKKSGNASVWSPVRSASIDRSDEEEENSGDFLAWIIAHFEEQIMERNCVSVSPCLIRSSSEVFIKVGYGALNSYSIIEGSCSTTLPCYKSERTISSTQL
Homology
[Close]
BLAST of CmaCh14G004950 vs. NCBI nr
Match: KAG7017626.1 (Exocyst complex component SEC15A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-14
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 19 GKKSGNASVWSPVRSASIDRSDEEEENSGDFLAWIIAHFEEQIMERN 66
          GKKSGN S WSPV+SA IDRS+EEEENSGDFLAWIIAHFEEQIMERN
Sbjct: 17 GKKSGNESEWSPVQSALIDRSEEEEENSGDFLAWIIAHFEEQIMERN 63

[Close]
BLAST of CmaCh14G004950 vs. NCBI nr
Match: KAG6580870.1 (Exocyst complex component SEC15A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 75  RSSSEVFIKVGYGALNSYSIIEGSCSTTLPCYK 108
           RSSSEVFIKVGYGALNSYSIIEGSCSTTLPCYK
Sbjct: 39  RSSSEVFIKVGYGALNSYSIIEGSCSTTLPCYK 71

The following BLAST results are available for this feature:
BLAST of CmaCh14G004950 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G004950 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G004950 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017626.13.0e-1489.36Exocyst complex component SEC15A, partial [Cucurbita argyrosperma subsp. argyros... [more]
KAG6580870.11.1e-08100.00Exocyst complex component SEC15A, partial [Cucurbita argyrosperma subsp. sororia... [more]
BLAST of CmaCh14G004950 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G004950.1CmaCh14G004950.1mRNA