CmaCh14G004900 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G004900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	TFIIS N-terminal domain-containing protein
Location	Cma_Chr14: 2405676 .. 2409990 (+)
RNA-Seq Expression	CmaCh14G004900
Synteny	CmaCh14G004900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGGGGTGTTTGGTGGGTTGGGGAGCTTAAAGAGAAAGAGGGATTTATGTAGTCTTGGTTTGGATACCCCAAAATCTGTGCCCTTTTTGCAGCACCCAGTTTTATTCTAATCTCCAATTTGAAGAGAGAGAGAGAGAGAGAGAGAGAGACAAACGAACAAAAAAACCCACAAATCCAATTCCAATTCCGAATCAAAATCAATTCCATTGAAAGAGATTGAAGGATTGAATTTCTGTTCTTACTTTTCTCTTTCATTTTCCATTTTCCCCATATTTTTCTCCCCACTAGATTCCGGAACTTTTCCGAGATTAAAGAAGATCAAAGCAAAGCAACTAAGTTCATCTGTTACTCCCTTCGAATTTCCAACAATCCATCAAAACAGCACTTAGGTGTTCATCAATCCCCTGTTTCTGTTCTGTTTCTGTTTCTGTTCCTGTTCTTGATCTGATCCTTGATTTTCAACTCACTCTACAGACATTAACCAACTCTTTGTTGGGTTATGAACGGATGAACTACGACTGTTAATCAGTTTGTTGCTAACCATTTTCTCTGGGAATCGGATTCTGGTGGTGTTGGATTAGTGTTTGAGAAGGGTTTTCTTGTTGGGTGTTTATCGTTTACGGATTTCCTTCCAAACCCACCTCGAATCAACTGGGTTTAACCCCAATTCTTTGTTAGGTTTTCGTTTCGATGGCGATGGAATTCCCACATCGATTCTGATTTTTCGTTTGTGTTCGATCGAGTTTTGTAGATTCCGATCATGGCCGCCAAATCTGGGTCGTTGGATTCATGGAGGAATTACTTCCGGAATGCGAATTCGGATATCTTTAGCATAATCGATTACGCAATCTTGGTGGCGGCTTCTGATTGCCCTAAAGAGTTCAAGTTGAGGAGAGATCGAATAGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGCTGTTTTGGCTGCCATCGAGTGGATCTAGCGGTGGTCGGCGACGACAGCGACGGCGGCGAAACGGGTTTCAAGAGCGATTTTGCTGGAGATGGGTGTGAGTTTGAAGCCGGTGGTAGCAAAGAAAGCAAGGTTTATAGCAGTAGAGATGATGCAGGGGAGATGAATTTCATTAGCTTTGGTGAAGCTGAAGCTGAAGCATTAACTGATGAAATTGAACAAGAATCTCAGATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTTAATAACTTCGAAGAAGCGGTAATGATTTCTTTGAATGTTTTTTTCATTTTCTGGGCTGTTCTTGTCTGTCATGATGATGATTATTGTTCTGTTTGTTTGTGTGTTCTTGTGTGTTCTTGTGCAGTCCGATTCAGTGTTGTTTGATTCACTTAGAAGACTTGAATTGATGGCTTTATCAGTTGATACACTGCAGGTGATTTGAATTCTTCTGTTTGTTCTTGTTTATGAGGAAAATCTGGATTCAAGTTATGAGTCTTTTTTCTCTCTTTATCAGGCAACTGAGATTGGCAAGGCTGTTAATGGCCTCCGAAAGCATGGATCGAAGCGCATCCGCCATCTTGCTCGAGTTCTTATCTTGTACTAAATCTTTCCTTCGAAGTTCATCGAGTATTTAGATGACATGTGATGAATGTCCACATTTGTCTGCTATGTTCTATAGATCTTATTGATTTGATTTTGAGCTGATCTGTTGAGTTTTATATACGACTTGGTGCATAGGATCGACAAAGAACGATCACTTTCGACCGTTCATGTTCCCTCGTTTTGTTTGTTGAGTGGATGAAGAGCTTTTCGAGCTCGTCTATTGAAAGGGTTCTCTATCTGTAACAGCTCAAATCCACAGGCTTTCCCTTTTGAGTTTACCCCCAAGGTTTTTAAACTGCGTCTGTTAGGGAGAGGTTTCCACGCCCTGAGAAAGGATGTTTTGTTCTCCTCCCTAACCGATGTGAGATCTCACAATCCACCCCCTTTCAAGGCCCAGCCGCCTCACTGATACTCGTTCCATTCTCCAATGGATGTGGGACCCCAATCCACTCCCCTTTAGGACCCAACGTACTTATTGACACACCATCTTGTGTCCACCCTCTAGGGCTTAGCCACCTCACTGGCACATCGCCCAGTGTCTGGCTCTAATACCATTTGTAACAGCCTAAGTTCACCGCTAGTAGATATTGTCCTCTTTAGGCTTTCCCTTTCGGGCTTACCCTCAAGGTTTTTAAAATGTTCCTACTAGGGAGAGACTTTCACACCTTTAGAAAGGATGTTTTGTTCTCCTCCCCAACCGATGTGGGATCTCGCACTATCTGTGATGTCTTGTTTTCGATAACATTTGCACTCATATCTGTCATGTCTTCAATATCTGTTATTACTTTACTTTGTTTGAGAGTAAAAGATCTACCTTATGGGTTGCAGGGAGTGGAAACAAATGGTGGACGTGTGGGTAAAAGCCACCGCTGCGGTTCAAGGTACAGTTCGTTTACAAATCTCTTCGCTTTCGTCAACTTTTTCGAGTTCGTTATTGAGAAACGTTCTTATTTTTGTTGACAAATAGCTGCAGAAGTCACACCGGACTCGAAAAACAAGTCTGCTGCTGCAACAGAAGAAGAAGATGATTATGAAGAAGAAGGGCTTCCATCTCCTCCTTTAGACGAAGCTGCATTTTTTACGACGCAGCCGACATCCATGGAGCTCTCACAAGTATGACTCTACTTCCTTGCTTATTCTATAGAAACGTTTTCTACTTTATGTTACATCGTTTCTGATCGACTGTATTTTACTTTCGGTTCCGTTCCGTTCCCTGCTGAAGTTCTTTGATGGCATGGACGATGATGGAAGTGAGTTCGTTACGCAATATCCTCTCTACAATTTTTAGCTTCCCATTTCTTAGATTCATGATTACGAATTGGGATATATGTCGTTTCAGATCCTCGAAACAGCGGGGAAGTCGTCAAGAACCGTGATAATGTGAGAAAAACATCGAATGGCATTCCAAATTCTATGAGGTGCAAACAACAAACCGTTCGAGAGGTCGACGTGCCTGCTAAGGTTAATAAGAGTCAAATGAAGGAACAAGTTGTGAAGCCAAATTCTGGGCTTTTGAGGCCACAGAAGCTAAGCACAGAGCAGAAGAACATACAGCGCAAAATGGATAAGCCTACAATCCCAAAGAGGAGCCAGCAAGATGTAAGAACAAGAAGATCTGATACGACTAGGTAATTCGGCTCGACATTCGAACTTTTACCTGATTTGTTTGGTTTGTGTTTACCAGAACTTCAAGAGCTCGGACGAGGTTGCGGTTCAAGTGAAACTTGAAGCGACAAAGAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGGTAATTGTTGCGTTTTTCAGTTCGTGTTCTTATCGATTCTAATACCAGTTTCATGGGGAATGTTAAGGTTTAGTGTCGAACCAATTAAGCTAAATGTTTATGAGTTTCTCAGTTGATTCATGGTGTTAATTCAACAGCCAAGAAGCAGCGTACGATACAGGTTATGGAACTACACGATCTTCCCAAGCAGGGACTCGGCCATCGAAATCCACACATAAAATCTGGAGGATACCAGCGGCATTGGGCGAATGGTCGGCGTTAGGATCGTCGATGTTAAGGTAGAAGACTGATGGTTCCAAGAATCAGGTGGAAGATGGTTCCAGCTAAAGCTCCCTGGCAAACAGTGTCTGTCTTGACCGACTTGCTCGAAGGTAAACATCAAGAAACTTGGTTTCGGTTCGGTTTCGGTCTGGCGTGCCAGAGAAGGCGGTCCAGATTGTAAGGAGAGTTGGGTTATCTCTTCACATAATTACTGTATAGAAGCCTTCATTTGATATCCTCTTCACTTCAGTGACTGCTACTCATGGACTGTTTCCTTCCCCCATGTTTCTTACATTCAAGGAAGCCTTTCTTTCATATAATTTGGCATAAAAACAAGGTGCAGTCCAATAAACAGTGTAAAATCTGATCTGTATACTCCTTCTGATGATGAATGCTCATTGTTCTTATGGAATAATAGCTACTGATTCATTCAAATGCTCTTTCTTTTTGTTCTAGAGCTGTTTGTTCGAGACGGGTTCGTTGAGGGGATAGAAACATGTCTGGTAATCGTTTTTTCGTTCTACATTTTCATGGTTGAGATGCGTTTGGTAAACGAAAAGTGATATTGAATGTCATGGAAAGGGTGTGGATCATTAAGATTCAAACATTTTTTAACTCCTAATCCTCTGTGAAGAGATTTAAACCTCTGGTCTCTTAGTTGATGATATATTCGTTAATCGTGTTTAGTTACCGACGGAATGTGTAACAGTCTAA

mRNA sequence

AGAGGGGTGTTTGGTGGGTTGGGGAGCTTAAAGAGAAAGAGGGATTTATGTAGTCTTGGTTTGGATACCCCAAAATCTGTGCCCTTTTTGCAGCACCCAGTTTTATTCTAATCTCCAATTTGAAGAGAGAGAGAGAGAGAGAGAGAGAGACAAACGAACAAAAAAACCCACAAATCCAATTCCAATTCCGAATCAAAATCAATTCCATTGAAAGAGATTGAAGGATTGAATTTCTGTTCTTACTTTTCTCTTTCATTTTCCATTTTCCCCATATTTTTCTCCCCACTAGATTCCGGAACTTTTCCGAGATTAAAGAAGATCAAAGCAAAGCAACTAAGTTCATCTGTTACTCCCTTCGAATTTCCAACAATCCATCAAAACAGCACTTAGACATTAACCAACTCTTTGTTGGGTTATGAACGGATGAACTACGACTGTTAATCAGTTTGTTGCTAACCATTTTCTCTGGGAATCGGATTCTGGTGGTGTTGGATTAGTGTTTGAGAAGGGTTTTCTTGTTGGGTGTTTATCGTTTACGGATTTCCTTCCAAACCCACCTCGAATCAACTGGGTTTAACCCCAATTCTTTGTTAGGTTTTCGTTTCGATGGCGATGGAATTCCCACATCGATTCTGATTTTTCGTTTGTGTTCGATCGAGTTTTGTAGATTCCGATCATGGCCGCCAAATCTGGGTCGTTGGATTCATGGAGGAATTACTTCCGGAATGCGAATTCGGATATCTTTAGCATAATCGATTACGCAATCTTGGTGGCGGCTTCTGATTGCCCTAAAGAGTTCAAGTTGAGGAGAGATCGAATAGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGCTGTTTTGGCTGCCATCGAGTGGATCTAGCGGTGGTCGGCGACGACAGCGACGGCGGCGAAACGGGTTTCAAGAGCGATTTTGCTGGAGATGGGTGTGAGTTTGAAGCCGGTGGTAGCAAAGAAAGCAAGGTTTATAGCAGTAGAGATGATGCAGGGGAGATGAATTTCATTAGCTTTGGTGAAGCTGAAGCTGAAGCATTAACTGATGAAATTGAACAAGAATCTCAGATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTTAATAACTTCGAAGAAGCGTCCGATTCAGTGTTGTTTGATTCACTTAGAAGACTTGAATTGATGGCTTTATCAGTTGATACACTGCAGGCAACTGAGATTGGCAAGGCTGTTAATGGCCTCCGAAAGCATGGATCGAAGCGCATCCGCCATCTTGCTCGAGTTCTTATCTTGGAGTGGAAACAAATGGTGGACGTGTGGGTAAAAGCCACCGCTGCGGTTCAAGCTGCAGAAGTCACACCGGACTCGAAAAACAAGTCTGCTGCTGCAACAGAAGAAGAAGATGATTATGAAGAAGAAGGGCTTCCATCTCCTCCTTTAGACGAAGCTGCATTTTTTACGACGCAGCCGACATCCATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAACAGCGGGGAAGTCGTCAAGAACCGTGATAATGTGAGAAAAACATCGAATGGCATTCCAAATTCTATGAGGTGCAAACAACAAACCGTTCGAGAGGTCGACGTGCCTGCTAAGGTTAATAAGAGTCAAATGAAGGAACAAGTTGTGAAGCCAAATTCTGGGCTTTTGAGGCCACAGAAGCTAAGCACAGAGCAGAAGAACATACAGCGCAAAATGGATAAGCCTACAATCCCAAAGAGGAGCCAGCAAGATAACTTCAAGAGCTCGGACGAGGTTGCGGTTCAAGTGAAACTTGAAGCGACAAAGAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGCCAAGAAGCAGCGTACGATACAGGTTATGGAACTACACGATCTTCCCAAGCAGGGACTCGGCCATCGAAATCCACACATAAAATCTGGAGGATACCAGCGGCATTGGGCGAATGGTCGGCGTTAGGATCGTCGATGTTAAGGTAGAAGACTGATGGTTCCAAGAATCAGGTGGAAGATGGTTCCAGCTAAAGCTCCCTGGCAAACAGTGTCTGTCTTGACCGACTTGCTCGAAGGTAAACATCAAGAAACTTGGTTTCGGTTCGGTTTCGGTCTGGCGTGCCAGAGAAGGCGGTCCAGATTGTAAGGAGAGTTGGGTTATCTCTTCACATAATTACTGTATAGAAGCCTTCATTTGATATCCTCTTCACTTCAGTGACTGCTACTCATGGACTGTTTCCTTCCCCCATGTTTCTTACATTCAAGGAAGCCTTTCTTTCATATAATTTGGCATAAAAACAAGGTGCAGTCCAATAAACAGTGTAAAATCTGATCTGTATACTCCTTCTGATGATGAATGCTCATTGTTCTTATGGAATAATAGCTACTGATTCATTCAAATGCTCTTTCTTTTTGTTCTAGAGCTGTTTGTTCGAGACGGGTTCGTTGAGGGGATAGAAACATGTCTGGTAATCGTTTTTTCGTTCTACATTTTCATGGTTGAGATGCGTTTGGTAAACGAAAAGTGATATTGAATGTCATGGAAAGGGTGTGGATCATTAAGATTCAAACATTTTTTAACTCCTAATCCTCTGTGAAGAGATTTAAACCTCTGGTCTCTTAGTTGATGATATATTCGTTAATCGTGTTTAGTTACCGACGGAATGTGTAACAGTCTAA

Coding sequence (CDS)

ATGGCCGCCAAATCTGGGTCGTTGGATTCATGGAGGAATTACTTCCGGAATGCGAATTCGGATATCTTTAGCATAATCGATTACGCAATCTTGGTGGCGGCTTCTGATTGCCCTAAAGAGTTCAAGTTGAGGAGAGATCGAATAGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGCTGTTTTGGCTGCCATCGAGTGGATCTAGCGGTGGTCGGCGACGACAGCGACGGCGGCGAAACGGGTTTCAAGAGCGATTTTGCTGGAGATGGGTGTGAGTTTGAAGCCGGTGGTAGCAAAGAAAGCAAGGTTTATAGCAGTAGAGATGATGCAGGGGAGATGAATTTCATTAGCTTTGGTGAAGCTGAAGCTGAAGCATTAACTGATGAAATTGAACAAGAATCTCAGATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTTAATAACTTCGAAGAAGCGTCCGATTCAGTGTTGTTTGATTCACTTAGAAGACTTGAATTGATGGCTTTATCAGTTGATACACTGCAGGCAACTGAGATTGGCAAGGCTGTTAATGGCCTCCGAAAGCATGGATCGAAGCGCATCCGCCATCTTGCTCGAGTTCTTATCTTGGAGTGGAAACAAATGGTGGACGTGTGGGTAAAAGCCACCGCTGCGGTTCAAGCTGCAGAAGTCACACCGGACTCGAAAAACAAGTCTGCTGCTGCAACAGAAGAAGAAGATGATTATGAAGAAGAAGGGCTTCCATCTCCTCCTTTAGACGAAGCTGCATTTTTTACGACGCAGCCGACATCCATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAACAGCGGGGAAGTCGTCAAGAACCGTGATAATGTGAGAAAAACATCGAATGGCATTCCAAATTCTATGAGGTGCAAACAACAAACCGTTCGAGAGGTCGACGTGCCTGCTAAGGTTAATAAGAGTCAAATGAAGGAACAAGTTGTGAAGCCAAATTCTGGGCTTTTGAGGCCACAGAAGCTAAGCACAGAGCAGAAGAACATACAGCGCAAAATGGATAAGCCTACAATCCCAAAGAGGAGCCAGCAAGATAACTTCAAGAGCTCGGACGAGGTTGCGGTTCAAGTGAAACTTGAAGCGACAAAGAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGCCAAGAAGCAGCGTACGATACAGGTTATGGAACTACACGATCTTCCCAAGCAGGGACTCGGCCATCGAAATCCACACATAAAATCTGGAGGATACCAGCGGCATTGGGCGAATGGTCGGCGTTAG

Protein sequence

MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRCFGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGEAEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNGIPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIPKRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHIKSGGYQRHWANGRR

Homology

[Close]

BLAST of CmaCh14G004900 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.7e-84
Identity = 214/453 (47.24%), Postives = 271/453 (59.82%), Query Frame = 0


Query: 5   SGSLDSWRNYF-RNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRCFGC 64
           SGSLDSWR YF R  +SDIF IID+AI+VAA+DCP +FK RRD+IAE LFSCR+ RC GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  HRVDLAVVGDD-SDGGETGFKSDFAGDGCEFE-AGGSKESKVYSSRDDAGEMNFISFGEA 124
             ++L+V GDD ++ G TG          ++E AGGSKESK  SSR D  ++   ++   
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQI-VSNYTFD 123

Query: 125 EAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEIG 184
           EAEAL+DEIE+ S +  EV RIKEIL N E+  +SVL DSLR L+LM+L+VD L++TEIG
Sbjct: 124 EAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIG 183

Query: 185 KAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEED 244
           KAVNGLRKH S +IR LA+ LI EWK++VD WV  T  +  AE TP+S N S        
Sbjct: 184 KAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLD----- 243

Query: 245 DYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNGI 304
             EEE  PS P D    FT +P   E+S FFD +D DGNPRNS E   +R++ R+  N  
Sbjct: 244 --EEEAFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIA 303

Query: 305 PNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQ-----RKMDK 364
                  Q  ++  D P +     +K        G  RP K STEQ+         K +K
Sbjct: 304 KRKPEGTQMRIQ--DAPFR----SIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEK 363

Query: 365 PTIPKR------------SQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 424
           P I ++             QQ+  K  D      K E  KRKLQESYQ  ENAKKQRTIQ
Sbjct: 364 PMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESYQHHENAKKQRTIQ 423

Query: 425 VMELHDLPKQGLGHRNPHIKSGGYQRHWANGRR 438
           V+E+  +PKQG   +    + G   R+WANGR+
Sbjct: 424 VLEM--IPKQGSAQKPQLKRPGMSNRNWANGRK 436

[Close]

BLAST of CmaCh14G004900 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 6.7e-62
Identity = 182/440 (41.36%), Postives = 238/440 (54.09%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRCFGCH 64
           S SLD+WR YFR  +SDIF IID+AI+VAA+D PKEFK R DRIAE LFSC+++RC GC 
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGEAEAE 124
            ++L++ GD++         +  G G     GG         R D+G             
Sbjct: 67  HLELSIAGDEA-------AVEIVGVG-----GG-------GDRGDSG------------- 126

Query: 125 ALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEIGKAV 184
             T E E+ S  V EV+RI++IL+N ++  DSVL +SLR+LE M++SVD L+ TEIGKAV
Sbjct: 127 VATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAV 186

Query: 185 NGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEEDDYE 244
           NGLR+H S +I  LA+ L  EWK++VD W+     +   E TP+S N S          E
Sbjct: 187 NGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVID-------E 246

Query: 245 EEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDN-------VRKT 304
           EE  PSPP D    +  +P   ELSQ  D +D DGNPR+S E    R +        + T
Sbjct: 247 EEAFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGT 306

Query: 305 SNGIPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQ--KNIQRKMD 364
           ++       C  Q  R  +   +  K    + VV+P     R  K S EQ    IQRK  
Sbjct: 307 NDANVVGRYCNDQQTRREEADVRPMKHSATD-VVEPK----RQTKQSREQMVSAIQRKPT 366

Query: 365 KPTIPKRS----QQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDL 424
             T  KR     QQD  K+ D      K E  KRKLQESY Q ENAK+QRTIQV+E   +
Sbjct: 367 AVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRTIQVLE--TI 395

Query: 425 PKQGLGHRNPHIKSGGYQRH 432
           PKQ    + P +K    +R+
Sbjct: 427 PKQNKVQK-PQLKRPATRRY 395

[Close]

BLAST of CmaCh14G004900 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-22
Identity = 118/440 (26.82%), Postives = 185/440 (42.05%), Query Frame = 0


Query: 8   LDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRL-TRCFGCHRV 67
           LD +R+   NA  D+++ ID AILVA+ D  +E K RRD I E+L++  +  +C  C   
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNC--- 62

Query: 68  DLAVVGDDSDGGETGFKSDFAGDGCEFEA--GGSKESKVYSSRDDAGEMNFISFGEAEAE 127
                             DF G G   EA  G     +V+   ++  E    +  E E  
Sbjct: 63  ------------------DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVR 122

Query: 128 ALTDEIEQESQI----------VGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDT 187
             +  +E +                ++ IKE L +  + S+  L + L+ LE M ++   
Sbjct: 123 EKSVNVEDDDDFDPFAGLFDDEQKSIVEIKEKLED-PDLSEESLVELLQNLEDMDITFQA 182

Query: 188 LQATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSA 247
           LQ T+IG+ VN +RKH S  +R LA+ L+ +WK+ VD WVK     Q  ++ P S     
Sbjct: 183 LQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN---QPGDLEPPS----- 242

Query: 248 AATEEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNV 307
               +ED   ++ L +    +   F   P                 P+N           
Sbjct: 243 -LIADEDSPVQKALHNGSRQQVPDFGYSPV----------------PQNG---------- 302

Query: 308 RKTSNGIPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKM 367
                                      + S     + +P     +P+ ++ + +      
Sbjct: 303 --------------------------YSSSSKNSNITEPER---KPRPVAPQPRRESPSP 353

Query: 368 DKPTIPKRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQ 427
            KP+ P  SQQ      D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM++HD+PK 
Sbjct: 363 AKPSRPSPSQQT--IPRDKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMDIHDIPKP 353

Query: 428 GLGHRNPHIKSGGYQ--RHW 433
             G   P  K G  Q  RHW
Sbjct: 423 KKGGFFPR-KGGSSQGGRHW 353

[Close]

BLAST of CmaCh14G004900 vs. ExPASy Swiss-Prot
Match: Q2KI09 (Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.9e-04
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 139 EVLRI-KEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEIGKAVNGLRKH-GSKRIR 198
           E+LRI K++             D L++L    +S+  LQ T IG AVNG+RKH  +K + 
Sbjct: 6   ELLRIAKKLEKMVARKKTEGALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVV 65

Query: 199 HLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEEDDYEEEGLPSPP 253
            LA+VLI  WKQ++D    AT   +  E    +K K      +  D++ E   SPP
Sbjct: 66  ALAKVLIRNWKQLLD--SPATPKGEKGEERVKAKKKEKGL--DCSDWKPETSLSPP 117

[Close]

BLAST of CmaCh14G004900 vs. ExPASy TrEMBL
Match: A0A6J1J8F3 (probable mediator of RNA polymerase II transcription subunit 26b isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482296 PE=4 SV=1)

HSP 1 Score: 838.2 bits (2164), Expect = 1.6e-239
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120
           FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE
Sbjct: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120

Query: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180
           AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI
Sbjct: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180

Query: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240
           GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE
Sbjct: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240

Query: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300
           DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG
Sbjct: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300

Query: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360
           IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP
Sbjct: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360

Query: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420
           KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN
Sbjct: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420

Query: 421 PHIKSGGYQRHWANGRR 438
           PHIKSGGYQRHWANGRR
Sbjct: 421 PHIKSGGYQRHWANGRR 437

[Close]

BLAST of CmaCh14G004900 vs. ExPASy TrEMBL
Match: A0A6J1J6V4 (probable mediator of RNA polymerase II transcription subunit 26b isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482296 PE=4 SV=1)

HSP 1 Score: 830.5 bits (2144), Expect = 3.3e-237
Identity = 435/437 (99.54%), Postives = 435/437 (99.54%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120
           FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE
Sbjct: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120

Query: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180
           AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI
Sbjct: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180

Query: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240
           GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQ  EVTPDSKNKSAAATEEE
Sbjct: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQ--EVTPDSKNKSAAATEEE 240

Query: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300
           DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG
Sbjct: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300

Query: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360
           IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP
Sbjct: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360

Query: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420
           KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN
Sbjct: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420

Query: 421 PHIKSGGYQRHWANGRR 438
           PHIKSGGYQRHWANGRR
Sbjct: 421 PHIKSGGYQRHWANGRR 435

[Close]

BLAST of CmaCh14G004900 vs. ExPASy TrEMBL
Match: A0A6J1F1P6 (probable mediator of RNA polymerase II transcription subunit 26b isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441365 PE=4 SV=1)

HSP 1 Score: 820.1 bits (2117), Expect = 4.5e-234
Identity = 429/437 (98.17%), Postives = 431/437 (98.63%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120
           FGC RV+LAVVGDDSDGGETGFKSDFAGDGCEFE GGSKESKVYSSRDDAGEMNFISFGE
Sbjct: 61  FGCDRVELAVVGDDSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNFISFGE 120

Query: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180
           AEAEALTDEIEQESQIV EVLRIKEILNNFEEASDSVLFDSLRRLELMALSVD+LQATEI
Sbjct: 121 AEAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQATEI 180

Query: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240
           GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE
Sbjct: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240

Query: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300
           DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG
Sbjct: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300

Query: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360
            PNS RCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKN QRKMDKPTIP
Sbjct: 301 DPNSTRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNTQRKMDKPTIP 360

Query: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420
           KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN
Sbjct: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420

Query: 421 PHIKSGGYQRHWANGRR 438
           PHIKSGGYQRHWANGRR
Sbjct: 421 PHIKSGGYQRHWANGRR 437

[Close]

BLAST of CmaCh14G004900 vs. ExPASy TrEMBL
Match: A0A6J1F6N9 (probable mediator of RNA polymerase II transcription subunit 26b isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441365 PE=4 SV=1)

HSP 1 Score: 812.4 bits (2097), Expect = 9.3e-232
Identity = 427/437 (97.71%), Postives = 429/437 (98.17%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120
           FGC RV+LAVVGDDSDGGETGFKSDFAGDGCEFE GGSKESKVYSSRDDAGEMNFISFGE
Sbjct: 61  FGCDRVELAVVGDDSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNFISFGE 120

Query: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180
           AEAEALTDEIEQESQIV EVLRIKEILNNFEEASDSVLFDSLRRLELMALSVD+LQATEI
Sbjct: 121 AEAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQATEI 180

Query: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240
           GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQ  EVTPDSKNKSAAATEEE
Sbjct: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQ--EVTPDSKNKSAAATEEE 240

Query: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300
           DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG
Sbjct: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300

Query: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360
            PNS RCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKN QRKMDKPTIP
Sbjct: 301 DPNSTRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNTQRKMDKPTIP 360

Query: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420
           KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN
Sbjct: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420

Query: 421 PHIKSGGYQRHWANGRR 438
           PHIKSGGYQRHWANGRR
Sbjct: 421 PHIKSGGYQRHWANGRR 435

[Close]

BLAST of CmaCh14G004900 vs. ExPASy TrEMBL
Match: A0A5A7UDQ2 (Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006410 PE=4 SV=1)

HSP 1 Score: 711.4 bits (1835), Expect = 2.2e-201
Identity = 384/453 (84.77%), Postives = 405/453 (89.40%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIF IIDYAILVAASDCPKEF+LRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCHRVDLAVVGD-DSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMN---FI 120
            GC RV+LAV GD D D GETGFKSDFAGDGCEFEAGGSKESKVYSSRDD GEMN     
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 SFGEAEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQ 180
           +F   EAEALTDEIEQESQIVGEVLRIKEILNNFE+ SDSVLF+SLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAA 240
           ATEIGKAVN LRKHGSKRIRHLARVLI+EWK MVDVWV+ATAAVQ AEVTPDSK+KS AA
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKS-AA 240

Query: 241 TEEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRK 300
            +EEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+ VKNR+NVRK
Sbjct: 241 VKEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGIPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKP--------NSGLLRPQKLSTEQK 360
           TSNG  N  RC QQT REV+V +K NK+QMKEQVVKP        NSGLLR QKLSTEQK
Sbjct: 301 TSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQK 360

Query: 361 N----IQRKMDKPTIPKRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           +     QRK++KPTIPKR+QQDNFK SDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDLPKQGLGHRNPHIKSGGYQRHWANGRR 438
           VMELHDLPKQG+GHRNPH+KSGG+ RHW NGRR
Sbjct: 421 VMELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CmaCh14G004900 vs. NCBI nr
Match: XP_022983774.1 (probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Cucurbita maxima])

HSP 1 Score: 838.2 bits (2164), Expect = 3.3e-239
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120
           FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE
Sbjct: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120

Query: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180
           AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI
Sbjct: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180

Query: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240
           GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE
Sbjct: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240

Query: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300
           DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG
Sbjct: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300

Query: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360
           IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP
Sbjct: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360

Query: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420
           KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN
Sbjct: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420

Query: 421 PHIKSGGYQRHWANGRR 438
           PHIKSGGYQRHWANGRR
Sbjct: 421 PHIKSGGYQRHWANGRR 437

[Close]

BLAST of CmaCh14G004900 vs. NCBI nr
Match: XP_022983775.1 (probable mediator of RNA polymerase II transcription subunit 26b isoform X2 [Cucurbita maxima])

HSP 1 Score: 830.5 bits (2144), Expect = 6.8e-237
Identity = 435/437 (99.54%), Postives = 435/437 (99.54%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120
           FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE
Sbjct: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120

Query: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180
           AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI
Sbjct: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180

Query: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240
           GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQ  EVTPDSKNKSAAATEEE
Sbjct: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQ--EVTPDSKNKSAAATEEE 240

Query: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300
           DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG
Sbjct: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300

Query: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360
           IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP
Sbjct: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360

Query: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420
           KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN
Sbjct: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420

Query: 421 PHIKSGGYQRHWANGRR 438
           PHIKSGGYQRHWANGRR
Sbjct: 421 PHIKSGGYQRHWANGRR 435

[Close]

BLAST of CmaCh14G004900 vs. NCBI nr
Match: XP_023527320.1 (probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 825.5 bits (2131), Expect = 2.2e-235
Identity = 431/437 (98.63%), Postives = 432/437 (98.86%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120
           FGC RV+LAVVGDDSDGGETGFKSDFAGDGCEFE GGSKESKVYSSRDDAGEMNFISFGE
Sbjct: 61  FGCDRVELAVVGDDSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNFISFGE 120

Query: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180
           AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI
Sbjct: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180

Query: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240
           GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE
Sbjct: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240

Query: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300
           DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG
Sbjct: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300

Query: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360
            PNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKN QRKMDKPTIP
Sbjct: 301 DPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNTQRKMDKPTIP 360

Query: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420
           KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN
Sbjct: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420

Query: 421 PHIKSGGYQRHWANGRR 438
           PHIKSGGYQRHW NGRR
Sbjct: 421 PHIKSGGYQRHWGNGRR 437

[Close]

BLAST of CmaCh14G004900 vs. NCBI nr
Match: XP_022934087.1 (probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Cucurbita moschata] >KAG6580866.1 putative mediator of RNA polymerase II transcription subunit 26b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017622.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 820.1 bits (2117), Expect = 9.2e-234
Identity = 429/437 (98.17%), Postives = 431/437 (98.63%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120
           FGC RV+LAVVGDDSDGGETGFKSDFAGDGCEFE GGSKESKVYSSRDDAGEMNFISFGE
Sbjct: 61  FGCDRVELAVVGDDSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNFISFGE 120

Query: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180
           AEAEALTDEIEQESQIV EVLRIKEILNNFEEASDSVLFDSLRRLELMALSVD+LQATEI
Sbjct: 121 AEAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQATEI 180

Query: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240
           GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE
Sbjct: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240

Query: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300
           DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG
Sbjct: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300

Query: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360
            PNS RCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKN QRKMDKPTIP
Sbjct: 301 DPNSTRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNTQRKMDKPTIP 360

Query: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420
           KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN
Sbjct: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420

Query: 421 PHIKSGGYQRHWANGRR 438
           PHIKSGGYQRHWANGRR
Sbjct: 421 PHIKSGGYQRHWANGRR 437

[Close]

BLAST of CmaCh14G004900 vs. NCBI nr
Match: XP_023527321.1 (probable mediator of RNA polymerase II transcription subunit 26b isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 817.8 bits (2111), Expect = 4.6e-233
Identity = 429/437 (98.17%), Postives = 430/437 (98.40%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCHRVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGE 120
           FGC RV+LAVVGDDSDGGETGFKSDFAGDGCEFE GGSKESKVYSSRDDAGEMNFISFGE
Sbjct: 61  FGCDRVELAVVGDDSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNFISFGE 120

Query: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180
           AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI
Sbjct: 121 AEAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEI 180

Query: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEE 240
           GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQ  EVTPDSKNKSAAATEEE
Sbjct: 181 GKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQ--EVTPDSKNKSAAATEEE 240

Query: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300
           DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG
Sbjct: 241 DDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNG 300

Query: 301 IPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKMDKPTIP 360
            PNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKN QRKMDKPTIP
Sbjct: 301 DPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNTQRKMDKPTIP 360

Query: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420
           KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN
Sbjct: 361 KRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRN 420

Query: 421 PHIKSGGYQRHWANGRR 438
           PHIKSGGYQRHW NGRR
Sbjct: 421 PHIKSGGYQRHWGNGRR 435

[Close]

BLAST of CmaCh14G004900 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 314.7 bits (805), Expect = 1.2e-85
Identity = 214/453 (47.24%), Postives = 271/453 (59.82%), Query Frame = 0


Query: 5   SGSLDSWRNYF-RNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRCFGC 64
           SGSLDSWR YF R  +SDIF IID+AI+VAA+DCP +FK RRD+IAE LFSCR+ RC GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  HRVDLAVVGDD-SDGGETGFKSDFAGDGCEFE-AGGSKESKVYSSRDDAGEMNFISFGEA 124
             ++L+V GDD ++ G TG          ++E AGGSKESK  SSR D  ++   ++   
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQI-VSNYTFD 123

Query: 125 EAEALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEIG 184
           EAEAL+DEIE+ S +  EV RIKEIL N E+  +SVL DSLR L+LM+L+VD L++TEIG
Sbjct: 124 EAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIG 183

Query: 185 KAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEED 244
           KAVNGLRKH S +IR LA+ LI EWK++VD WV  T  +  AE TP+S N S        
Sbjct: 184 KAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLD----- 243

Query: 245 DYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNVRKTSNGI 304
             EEE  PS P D    FT +P   E+S FFD +D DGNPRNS E   +R++ R+  N  
Sbjct: 244 --EEEAFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIA 303

Query: 305 PNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQ-----RKMDK 364
                  Q  ++  D P +     +K        G  RP K STEQ+         K +K
Sbjct: 304 KRKPEGTQMRIQ--DAPFR----SIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEK 363

Query: 365 PTIPKR------------SQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 424
           P I ++             QQ+  K  D      K E  KRKLQESYQ  ENAKKQRTIQ
Sbjct: 364 PMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESYQHHENAKKQRTIQ 423

Query: 425 VMELHDLPKQGLGHRNPHIKSGGYQRHWANGRR 438
           V+E+  +PKQG   +    + G   R+WANGR+
Sbjct: 424 VLEM--IPKQGSAQKPQLKRPGMSNRNWANGRK 436

[Close]

BLAST of CmaCh14G004900 vs. TAIR 10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 239.6 bits (610), Expect = 4.8e-63
Identity = 182/440 (41.36%), Postives = 238/440 (54.09%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRCFGCH 64
           S SLD+WR YFR  +SDIF IID+AI+VAA+D PKEFK R DRIAE LFSC+++RC GC 
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGEAEAE 124
            ++L++ GD++         +  G G     GG         R D+G             
Sbjct: 67  HLELSIAGDEA-------AVEIVGVG-----GG-------GDRGDSG------------- 126

Query: 125 ALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEIGKAV 184
             T E E+ S  V EV+RI++IL+N ++  DSVL +SLR+LE M++SVD L+ TEIGKAV
Sbjct: 127 VATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAV 186

Query: 185 NGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEEDDYE 244
           NGLR+H S +I  LA+ L  EWK++VD W+     +   E TP+S N S          E
Sbjct: 187 NGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVID-------E 246

Query: 245 EEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDN-------VRKT 304
           EE  PSPP D    +  +P   ELSQ  D +D DGNPR+S E    R +        + T
Sbjct: 247 EEAFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGT 306

Query: 305 SNGIPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQ--KNIQRKMD 364
           ++       C  Q  R  +   +  K    + VV+P     R  K S EQ    IQRK  
Sbjct: 307 NDANVVGRYCNDQQTRREEADVRPMKHSATD-VVEPK----RQTKQSREQMVSAIQRKPT 366

Query: 365 KPTIPKRS----QQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDL 424
             T  KR     QQD  K+ D      K E  KRKLQESY Q ENAK+QRTIQV+E   +
Sbjct: 367 AVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRTIQVLE--TI 395

Query: 425 PKQGLGHRNPHIKSGGYQRH 432
           PKQ    + P +K    +R+
Sbjct: 427 PKQNKVQK-PQLKRPATRRY 395

[Close]

BLAST of CmaCh14G004900 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 193.7 bits (491), Expect = 3.0e-49
Identity = 119/266 (44.74%), Postives = 157/266 (59.02%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRCFGCH 64
           S SLD+WR YFR  +SDIF IID+AI+VAA+D PKEFK R DRIAE LFSC+++RC GC 
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVDLAVVGDDSDGGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDAGEMNFISFGEAEAE 124
            ++L++ GD++         +  G G     GG         R D+G             
Sbjct: 67  HLELSIAGDEA-------AVEIVGVG-----GG-------GDRGDSG------------- 126

Query: 125 ALTDEIEQESQIVGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDTLQATEIGKAV 184
             T E E+ S  V EV+RI++IL+N ++  DSVL +SLR+LE M++SVD L+ TEIGKAV
Sbjct: 127 VATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAV 186

Query: 185 NGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEEDDYE 244
           NGLR+H S +I  LA+ L  EWK++VD W+     +   E TP+S N S          E
Sbjct: 187 NGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVID-------E 232

Query: 245 EEGLPSPPLDEAAFFTTQPTSMELSQ 271
           EE  PSPP D    +  +P   ELSQ
Sbjct: 247 EEAFPSPPHD-LDIYAPEPNGFELSQ 232

[Close]

BLAST of CmaCh14G004900 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 109.0 bits (271), Expect = 9.8e-24
Identity = 118/440 (26.82%), Postives = 185/440 (42.05%), Query Frame = 0


Query: 8   LDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRL-TRCFGCHRV 67
           LD +R+   NA  D+++ ID AILVA+ D  +E K RRD I E+L++  +  +C  C   
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNC--- 62

Query: 68  DLAVVGDDSDGGETGFKSDFAGDGCEFEA--GGSKESKVYSSRDDAGEMNFISFGEAEAE 127
                             DF G G   EA  G     +V+   ++  E    +  E E  
Sbjct: 63  ------------------DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVR 122

Query: 128 ALTDEIEQESQI----------VGEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDT 187
             +  +E +                ++ IKE L +  + S+  L + L+ LE M ++   
Sbjct: 123 EKSVNVEDDDDFDPFAGLFDDEQKSIVEIKEKLED-PDLSEESLVELLQNLEDMDITFQA 182

Query: 188 LQATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSA 247
           LQ T+IG+ VN +RKH S  +R LA+ L+ +WK+ VD WVK     Q  ++ P S     
Sbjct: 183 LQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN---QPGDLEPPS----- 242

Query: 248 AATEEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEVVKNRDNV 307
               +ED   ++ L +    +   F   P                 P+N           
Sbjct: 243 -LIADEDSPVQKALHNGSRQQVPDFGYSPV----------------PQNG---------- 302

Query: 308 RKTSNGIPNSMRCKQQTVREVDVPAKVNKSQMKEQVVKPNSGLLRPQKLSTEQKNIQRKM 367
                                      + S     + +P     +P+ ++ + +      
Sbjct: 303 --------------------------YSSSSKNSNITEPER---KPRPVAPQPRRESPSP 353

Query: 368 DKPTIPKRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQ 427
            KP+ P  SQQ      D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM++HD+PK 
Sbjct: 363 AKPSRPSPSQQT--IPRDKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMDIHDIPKP 353

Query: 428 GLGHRNPHIKSGGYQ--RHW 433
             G   P  K G  Q  RHW
Sbjct: 423 KKGGFFPR-KGGSSQGGRHW 353

The following BLAST results are available for this feature:

BLAST of CmaCh14G004900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHK9	1.7e-84	47.24	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	6.7e-62	41.36	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
F4KFC7	1.4e-22	26.82	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]
Q2KI09	4.9e-04	35.34	Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 ...	[more]

BLAST of CmaCh14G004900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J8F3	1.6e-239	100.00	probable mediator of RNA polymerase II transcription subunit 26b isoform X1 OS=C...	[more]
A0A6J1J6V4	3.3e-237	99.54	probable mediator of RNA polymerase II transcription subunit 26b isoform X2 OS=C...	[more]
A0A6J1F1P6	4.5e-234	98.17	probable mediator of RNA polymerase II transcription subunit 26b isoform X1 OS=C...	[more]
A0A6J1F6N9	9.3e-232	97.71	probable mediator of RNA polymerase II transcription subunit 26b isoform X2 OS=C...	[more]
A0A5A7UDQ2	2.2e-201	84.77	Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]

BLAST of CmaCh14G004900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983774.1	3.3e-239	100.00	probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Cuc...	[more]
XP_022983775.1	6.8e-237	99.54	probable mediator of RNA polymerase II transcription subunit 26b isoform X2 [Cuc...	[more]
XP_023527320.1	2.2e-235	98.63	probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Cuc...	[more]
XP_022934087.1	9.2e-234	98.17	probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Cuc...	[more]
XP_023527321.1	4.6e-233	98.17	probable mediator of RNA polymerase II transcription subunit 26b isoform X2 [Cuc...	[more]

BLAST of CmaCh14G004900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05140.1	1.2e-85	47.24	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	4.8e-63	41.36	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	3.0e-49	44.74	Transcription elongation factor (TFIIS) family protein	[more]
AT5G09850.1	9.8e-24	26.82	Transcription elongation factor (TFIIS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 377..404
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 413..437
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 341..373
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..256
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 279..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..368
None	No IPR available	PANTHER	PTHR46554:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..436
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 139..211 e-value: 7.07368E-21 score: 84.2822
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 140..212 e-value: 2.1E-17 score: 73.8
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 162..210 e-value: 3.4E-11 score: 43.0
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 138..213 score: 20.90328
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 129..223 e-value: 2.2E-21 score: 77.4
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 135..218
IPR044805	Mediator of RNA polymerase II transcription subunit 26a/b-like	PANTHER	PTHR46554	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..436

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G004900.1	CmaCh14G004900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus