CmaCh14G004670 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G004670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr14: 2276493 .. 2276762 (-)
RNA-Seq Expression	CmaCh14G004670
Synteny	CmaCh14G004670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCCATCCATGCTTTACCTCCGCTTCTGCTTTCTCATCTTCTTAATAAGCAGCAGCAGCAGCATCAGCCTTGCGGCAGTGCAGCAGCCCAATGGTGGTGGCGGTGGCGGTGGCGGTGGCGGGGGAGGCTCAGGAAGCGGATCAAGCAGTGGTTCGGGCTCGGCTTCTGGATCTGGGTCGGGGTCTGGGAGTGGTAGCGGGTCTGGTTCCAGCGGAGTGTCTCCCCAGGCAATTGGCTTGAACCACAGGAAGGCCTTTCCCTGA

mRNA sequence

ATGGCCTCTCCATCCATGCTTTACCTCCGCTTCTGCTTTCTCATCTTCTTAATAAGCAGCAGCAGCAGCATCAGCCTTGCGGCAGTGCAGCAGCCCAATGGTGGTGGCGGTGGCGGTGGCGGTGGCGGGGGAGGCTCAGGAAGCGGATCAAGCAGTGGTTCGGGCTCGGCTTCTGGATCTGGGTCGGGGTCTGGGAGTGGTAGCGGGTCTGGTTCCAGCGGAGTGTCTCCCCAGGCAATTGGCTTGAACCACAGGAAGGCCTTTCCCTGA

Coding sequence (CDS)

ATGGCCTCTCCATCCATGCTTTACCTCCGCTTCTGCTTTCTCATCTTCTTAATAAGCAGCAGCAGCAGCATCAGCCTTGCGGCAGTGCAGCAGCCCAATGGTGGTGGCGGTGGCGGTGGCGGTGGCGGGGGAGGCTCAGGAAGCGGATCAAGCAGTGGTTCGGGCTCGGCTTCTGGATCTGGGTCGGGGTCTGGGAGTGGTAGCGGGTCTGGTTCCAGCGGAGTGTCTCCCCAGGCAATTGGCTTGAACCACAGGAAGGCCTTTCCCTGA

Protein sequence

MASPSMLYLRFCFLIFLISSSSSISLAAVQQPNGGGGGGGGGGGGSGSGSSSGSGSASGSGSGSGSGSGSGSSGVSPQAIGLNHRKAFP

Homology

[Close]

BLAST of CmaCh14G004670 vs. ExPASy TrEMBL
Match: A0A0A0LBI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-11
Identity = 70/91 (76.92%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MASPSMLYLRFCFLIFLISSSSSISLAAVQQPNGGGGGGGGGGGGSGSGSSSGSGSASGS 60
          MAS S L+L FCF IFLISSS   +LAAVQ+PN GGGGGGGGGGGSGSGSSSGSGSASGS
Sbjct: 1  MASSSKLFLCFCFFIFLISSS---ALAAVQRPN-GGGGGGGGGGGSGSGSSSGSGSASGS 60

Query: 61 GSGSGSGSGSGSS-GV-SPQAIGLNHRKAFP 90
          GSGSGSG GSG S G+ S QA G  HRKA P
Sbjct: 61 GSGSGSGGGSGDSVGISSDQAGGSTHRKASP 87

[Close]

BLAST of CmaCh14G004670 vs. NCBI nr
Match: KGN59380.1 (hypothetical protein Csa_000800 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 6.9e-11
Identity = 70/91 (76.92%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MASPSMLYLRFCFLIFLISSSSSISLAAVQQPNGGGGGGGGGGGGSGSGSSSGSGSASGS 60
          MAS S L+L FCF IFLISSS   +LAAVQ+PN GGGGGGGGGGGSGSGSSSGSGSASGS
Sbjct: 1  MASSSKLFLCFCFFIFLISSS---ALAAVQRPN-GGGGGGGGGGGSGSGSSSGSGSASGS 60

Query: 61 GSGSGSGSGSGSS-GV-SPQAIGLNHRKAFP 90
          GSGSGSG GSG S G+ S QA G  HRKA P
Sbjct: 61 GSGSGSGGGSGDSVGISSDQAGGSTHRKASP 87

The following BLAST results are available for this feature:

BLAST of CmaCh14G004670 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G004670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBI4	3.3e-11	76.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1	[more]

BLAST of CmaCh14G004670 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59380.1	6.9e-11	76.92	hypothetical protein Csa_000800 [Cucumis sativus]	[more]

BLAST of CmaCh14G004670 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G004670.1	CmaCh14G004670.1	mRNA