CmaCh14G004670 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G004670
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 2276493 .. 2276762 (-)
RNA-Seq ExpressionCmaCh14G004670
SyntenyCmaCh14G004670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTCCATCCATGCTTTACCTCCGCTTCTGCTTTCTCATCTTCTTAATAAGCAGCAGCAGCAGCATCAGCCTTGCGGCAGTGCAGCAGCCCAATGGTGGTGGCGGTGGCGGTGGCGGTGGCGGGGGAGGCTCAGGAAGCGGATCAAGCAGTGGTTCGGGCTCGGCTTCTGGATCTGGGTCGGGGTCTGGGAGTGGTAGCGGGTCTGGTTCCAGCGGAGTGTCTCCCCAGGCAATTGGCTTGAACCACAGGAAGGCCTTTCCCTGA

mRNA sequence

ATGGCCTCTCCATCCATGCTTTACCTCCGCTTCTGCTTTCTCATCTTCTTAATAAGCAGCAGCAGCAGCATCAGCCTTGCGGCAGTGCAGCAGCCCAATGGTGGTGGCGGTGGCGGTGGCGGTGGCGGGGGAGGCTCAGGAAGCGGATCAAGCAGTGGTTCGGGCTCGGCTTCTGGATCTGGGTCGGGGTCTGGGAGTGGTAGCGGGTCTGGTTCCAGCGGAGTGTCTCCCCAGGCAATTGGCTTGAACCACAGGAAGGCCTTTCCCTGA

Coding sequence (CDS)

ATGGCCTCTCCATCCATGCTTTACCTCCGCTTCTGCTTTCTCATCTTCTTAATAAGCAGCAGCAGCAGCATCAGCCTTGCGGCAGTGCAGCAGCCCAATGGTGGTGGCGGTGGCGGTGGCGGTGGCGGGGGAGGCTCAGGAAGCGGATCAAGCAGTGGTTCGGGCTCGGCTTCTGGATCTGGGTCGGGGTCTGGGAGTGGTAGCGGGTCTGGTTCCAGCGGAGTGTCTCCCCAGGCAATTGGCTTGAACCACAGGAAGGCCTTTCCCTGA

Protein sequence

MASPSMLYLRFCFLIFLISSSSSISLAAVQQPNGGGGGGGGGGGGSGSGSSSGSGSASGSGSGSGSGSGSGSSGVSPQAIGLNHRKAFP
Homology
BLAST of CmaCh14G004670 vs. ExPASy TrEMBL
Match: A0A0A0LBI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-11
Identity = 70/91 (76.92%), Postives = 74/91 (81.32%), Query Frame = 0

Query: 1  MASPSMLYLRFCFLIFLISSSSSISLAAVQQPNGGGGGGGGGGGGSGSGSSSGSGSASGS 60
          MAS S L+L FCF IFLISSS   +LAAVQ+PN GGGGGGGGGGGSGSGSSSGSGSASGS
Sbjct: 1  MASSSKLFLCFCFFIFLISSS---ALAAVQRPN-GGGGGGGGGGGSGSGSSSGSGSASGS 60

Query: 61 GSGSGSGSGSGSS-GV-SPQAIGLNHRKAFP 90
          GSGSGSG GSG S G+ S QA G  HRKA P
Sbjct: 61 GSGSGSGGGSGDSVGISSDQAGGSTHRKASP 87

BLAST of CmaCh14G004670 vs. NCBI nr
Match: KGN59380.1 (hypothetical protein Csa_000800 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 6.9e-11
Identity = 70/91 (76.92%), Postives = 74/91 (81.32%), Query Frame = 0

Query: 1  MASPSMLYLRFCFLIFLISSSSSISLAAVQQPNGGGGGGGGGGGGSGSGSSSGSGSASGS 60
          MAS S L+L FCF IFLISSS   +LAAVQ+PN GGGGGGGGGGGSGSGSSSGSGSASGS
Sbjct: 1  MASSSKLFLCFCFFIFLISSS---ALAAVQRPN-GGGGGGGGGGGSGSGSSSGSGSASGS 60

Query: 61 GSGSGSGSGSGSS-GV-SPQAIGLNHRKAFP 90
          GSGSGSG GSG S G+ S QA G  HRKA P
Sbjct: 61 GSGSGSGGGSGDSVGISSDQAGGSTHRKASP 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LBI43.3e-1176.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN59380.16.9e-1176.92hypothetical protein Csa_000800 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G004670.1CmaCh14G004670.1mRNA