CmaCh14G004660 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G004660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionprotein CHUP1, chloroplastic-like
LocationCma_Chr14: 2273043 .. 2277097 (+)
RNA-Seq ExpressionCmaCh14G004660
SyntenyCmaCh14G004660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCAATTGATGATCTGCAGGTTTCTCAAAGTTCCGATCGATCCGTCAAGCCATTCAGGTAATTCCTCCACTTTTGGAAGCTCTCTGATTGTGAATCTCTGAAGCCTAAATTCGGCGTTCTCTAAGGTGAGTGTTAGTTGCTTGCAGCCCCAGATAACCAAATTCTGTAGTGATTTTAGATATATCATCTCATTTGGCAACGATTTCAAAGTATCGCAATTGTAAATCATTAAGGTTTCAAGGTCTGCAAGGCACTCTGGCCGTTCGAATAGAATTTGTAGGTTTTTGCACCCTCCAATGGCGAGAAATTGCAGAGAAGTCATGGTTCCAACTCCGTTTTTGTGCAAACGAAGCTCTTTTGTTGTTATCCACAAGTATTTCAGGCTGATCAAATTCCTTATATCATTTGGCAATTCTTGAAGTTCGGAACAAGATTCAAGAATCAAGGTTTGCAGACTTTGTAGATTGCAGATTGAATTCGGCAGCCGCTTGATGTTCTTATTTCCATGCAAGTCGAGGTATCTCAGGCTTGTAAGTGTTCCTATAGCATTTGGAATTTCCTCTATGTTTGCATTGCCTAAATGTAACAATCTTAAGCTGTTGTACTTCGGAATGCACATTCCAGGTAGGGATGCATTAGGTGGCACCATATCTCTTACATGGAAGGCTAGGGATTTTATTTGAGTGACTGGTTTGGTACCTACTAAGCCCTCAGATTGTTCTTGTGCGAGTACGTGTGCAAGTTTTTGGATAAGAGGGTGCAGTTTAAACCAGTAGCCGAGGCCATGTTCTTCAATTTCTTGAACGAAACATCTTGACCATAGCTCCATGAAATACCTCTCACCTATATTTTTCATAGATGCGTGATTCTCTTCAGGTGAATGGAGGAGCCCATGTGCCATCCATAACTGAATCACGTCATTTGAAGATAATATGCGGTCTGGTAATTGAGCACAATGAAGAAAACAGGGCTTCAGGTGTGAGGGCATTTGATTATAGCATAATCTGAGTATATGTAAAATACCGTCATTTTCTTCCTCTTGTGCCCACAACTTGTCCTTGATATTCTTCCACTCAGCTATTCTAATTTTTGAAGATAGCAAGCTTCCCATACACTTTATTGCCAATGGAACTCCCTTGCATTTCTGCAGAATTTGGTTTTCTATTTCAGTGAATACTTCTCTGTTTACTTCTTGTCTATCTCTGAAAGCATATCTTTTGAATAACTTAGCTGATTTATCCTCTGACAGCCTCTCCAGTTTGAAGCCTGTTGGAACTTCCTGATTCTTATCGTTCGAATTCTGCATCGATTGTTTCTCAAACGCATAGACTATTCTTACTCCTAGAGCATCTGCGGTCTCCTCACTTTGAGTGGTCACTAAGATTTTGCTGTCCTCGTTTCCCATGTCCAATAGTTCCATCAATGCGGATGAATCGTCTAAGTTTGTGGTCGAAAGGTCTTGAATGACGAGCAAAAAAGATGTACCCTTCAGAAGTTGTCGAACCTTTAAATGCAATTGTTTCTTAGACAAGTCATTACAAATTTCTTTACAGGCTACAACACTATATACCTCTTCGATCAATCTCTGTGTATCAAAACCTTCTTTCACACAAACCCAGAATCTTGAAAGATACTGTTCAACTACTACTTTATGATGGTAAAGGAATTTGGCAAGTGTGCTCTTACCTATACCTGCTTCCCCAACTATGAGGAAGAATCCATGACTAGATTTGAAAGTTTGCAGAAGGTCAGCGTACCGATTGTCATGATAATCCGTTGGAGCATCAACTAATGTGTACTGCAATTGCCAACTTGGTTTCATGTGTCTTACTGAAACTTCAGTAGTGCTAAGGAAGGAGTGTGCTGTCTTCATTCTTCCTATGGAATCTGGGTGCTTTTCAGTGAGATGAAATTCATACATTCTGGCTGCAAGTGTATTCAAATGATTGCATAGTCTCTTCATTTTACGAATCAGTTTAGATTTATGTGCAGAAATTGGATCAGAGCACAAGAAAGGGGCTTGTACCTTTTTTCCAGTGCCCCCTTGTTCAAAGAAATCCCATTTGAATTCATCCATGGAGTCCTCAATTTGGTAAAAGATGTTTTGAAGCTCCTTAAGCCAGTTACGTAGATCATGATTCTGTTCTTGTTCTTGCTTCTCTTCAGCATCAAAAAGAATTGATTTAAGGCTCAACATGGTATACTCGATTGTTCGGAAGTTTGAGCAATTTTTTAGCCTACTCAAGATAGTTTCAGCGTGGTTGTAGATGAAATTAGCCATATTCTTATGGAAAATGTTGTTCCTCCTTGCGATTTATTGGGTTGTCCTCAATTGTCTTCTTACTCTTTGAGTCTGCCTGCCTTGTCTCTCTCGGGTGTCTACAGCAGATCTGATTAGTCTCGTGATGAAGAATAGTCTTTTCCGATCTTCCACTAAGAAAATCAGAGCATTGTCACGACAACTCAATTTACCCGATAAACTACTCAAGGCTCATGGTTTAGTAAGAGGGGGAGATTTGCTTTGAATCCGGGATGAATTTCTATAAATGGAGATTGTTGATATATGCACCTAATCCGTGGATTCGTTGCATTTTCATGAAGCAAAATAGCTTCAAACTTAACTCTTAGGGAAATGTATATTCTTCCCGTGCATCCTTGAAGAATAGAATAGGAGCACTCAACTCTCGCCAGGTATAATACTTCTCTTTAGGATTTATGTATTTAAGGAGTTTTGCAACTGTTTGCTTTTTATTCTAAACAAGTGGAGCCCTCATTTCTTCAAATGAACAGAGAATTCTATTCTTGCTGTGTTCGAAACTATCTGGAATAATCCCCTTCTTTCTTAGATGTAATTCCAAACTCAACACTTGGGGAAATGTATAGTCTTTCCCTTTATATTAAAGAACTGTATAGGAGGGGTCTTGGTATTCTTTAAGCTATTCCTTTACAGGTTCTTACAATTTCCCCTCTTACTTCAGAGTTATTTGGTAGAACTAGACCTTCTTTATTGAGAAGAACTAATATGAGCACCCAAAATCCTCTGCTTAGAGTTTGATTATCATGATTTCCATTCATTTTAAGGTTAACCAAATCCTGTTTTTGATTGTTTTGTTTATCTCAATTAGATTTACTCCAAATTAATTGACAAGATTCAAAATTTAGATGAATTTTCGGACTATTTTGTGATATTTGAACGATTGGTTGTGTTTAGGTTGTAGCCACAAAGCCATTAATAAATTTCGTGGATAACTTATGAATTGCGAGCTGATATGAACTTATGAGTGATAGAAGTATTATCATATACTACAGGGTTGTAATTACGCTGCATGCACTCGAACTCTCATAAGAGTCTTTATTGTGGACACATATACTACACGCCATATAATACTATGAACCGCACCATCAAAGGATTGATGATGATTATTTATATATATATAGATTCTGATTCAGGGAAAGGCCTTCCTGTGGTTCAAGCCAATTGCCTGGGGAGACACTCCGCTGGAACCAGACCCGCTACCACTCCCAGACCCCGACCCAGATCCAGAAGCCGAGCCCGAACCACTGCTTGATCCGCTTCCTGAGCCTCCCCCGCCACCGCCACCGCCACCGCCACCACCATTGGGCTGCTGCACTGCCGCAAGGCTGATGCTGCTGCTGCTGCTTATTAAGAAGATGAGAAAGCAGAAGCGGAGGTAAAGCATGGATGGAGAGGCCATGAGGGAATAAGGCTGAAGGGGACGTTTGTTGTTGATATTGGTATTTATAGAGAGTTTTGGGAGTTTGTGGGTTTGGGGCGTCTGGCATTTGTTGAGCGCGCAGATTGCCAAGGAGCCGACAATGTGTCGCCCTTTTGGGCATCGAACACAACACGCAAATGCGTCTTAATAGTTCCCATCAGTGGGGCGCCGGGGGGGCTTAGTGTGATCATCTCTTGTGTCCACTATTTTTTTTTGTTTTTTCTTCCCTTTCAGGCCCTTTTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTGAGTTGTTGTGGAGAAGATGAGGAAAGTGAACTAA

mRNA sequence

ATGGGGCAATTGATGATCTGCAGGTTTCTCAAAGTTCCGATCGATCCGTCAAGCCATTCAGATATATCATCTCATTTGGCAACGATTTCAAAGTATCGCAATTGTAAATCATTAAGGTTTCAAGGTCTGCAAGGCACTCTGGCCGTTCGAATAGAATTTATTGAATTCGGCAGCCGCTTGATGTTCTTATTTCCATGCAAGTCGAGGTATCTCAGGCTTGTGAATGGAGGAGCCCATGTGCCATCCATAACTGAATCACGTCATTTGAAGATAATATGCGGTCTGGGAAAGGCCTTCCTGTGGTTCAAGCCAATTGCCTGGGGAGACACTCCGCTGGAACCAGACCCGCTACCACTCCCAGACCCCGACCCAGATCCAGAAGCCGAGCCCGAACCACTGCTTGATCCGCTTCCTGAGCCTCCCCCGCCACCGCCACCGCCACCGCCACCACCATTGGGCTGCTGCACTGCCGCAAGGCTGATGCTGCTGCTGCTGCTTATTAAGAAGATGAGAAAGCAGAAGCGGAGAGAGTTTTGGGAGTTTGTGGGTTTGGGGCGTCTGGCATTTGTTGAGCGCGCAGATTGCCAAGGAGCCGACAATGTGTCGCCCTTTTGGGCATCGAACACAACACGCAAATGCGTCTTAATAGTTCCCATCAGTGGGGCGCCGGGGGGGCTTATTGTTGTGGAGAAGATGAGGAAAGTGAACTAA

Coding sequence (CDS)

ATGGGGCAATTGATGATCTGCAGGTTTCTCAAAGTTCCGATCGATCCGTCAAGCCATTCAGATATATCATCTCATTTGGCAACGATTTCAAAGTATCGCAATTGTAAATCATTAAGGTTTCAAGGTCTGCAAGGCACTCTGGCCGTTCGAATAGAATTTATTGAATTCGGCAGCCGCTTGATGTTCTTATTTCCATGCAAGTCGAGGTATCTCAGGCTTGTGAATGGAGGAGCCCATGTGCCATCCATAACTGAATCACGTCATTTGAAGATAATATGCGGTCTGGGAAAGGCCTTCCTGTGGTTCAAGCCAATTGCCTGGGGAGACACTCCGCTGGAACCAGACCCGCTACCACTCCCAGACCCCGACCCAGATCCAGAAGCCGAGCCCGAACCACTGCTTGATCCGCTTCCTGAGCCTCCCCCGCCACCGCCACCGCCACCGCCACCACCATTGGGCTGCTGCACTGCCGCAAGGCTGATGCTGCTGCTGCTGCTTATTAAGAAGATGAGAAAGCAGAAGCGGAGAGAGTTTTGGGAGTTTGTGGGTTTGGGGCGTCTGGCATTTGTTGAGCGCGCAGATTGCCAAGGAGCCGACAATGTGTCGCCCTTTTGGGCATCGAACACAACACGCAAATGCGTCTTAATAGTTCCCATCAGTGGGGCGCCGGGGGGGCTTATTGTTGTGGAGAAGATGAGGAAAGTGAACTAA

Protein sequence

MGQLMICRFLKVPIDPSSHSDISSHLATISKYRNCKSLRFQGLQGTLAVRIEFIEFGSRLMFLFPCKSRYLRLVNGGAHVPSITESRHLKIICGLGKAFLWFKPIAWGDTPLEPDPLPLPDPDPDPEAEPEPLLDPLPEPPPPPPPPPPPPLGCCTAARLMLLLLLIKKMRKQKRREFWEFVGLGRLAFVERADCQGADNVSPFWASNTTRKCVLIVPISGAPGGLIVVEKMRKVN
Homology
[Close]
BLAST of CmaCh14G004660 vs. ExPASy TrEMBL
Match: E5GBX5 (Uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.4e-18
Identity = 66/100 (66.00%), Postives = 73/100 (73.00%), Query Frame = 0 

Query: 120 PDPDPDPEAEPEPLLDPLPEPPPPPPPPPPPPLGCCTAARLMLLLLLIKKMRKQKRREFW 179
           PDPDPDPEAEP PLLD LP+  PPPPPPPPPPLG CTAAR   LLL+IKKM+KQK+R+  
Sbjct: 2   PDPDPDPEAEPPPLLDALPD--PPPPPPPPPPLGRCTAAR---LLLIIKKMKKQKQRKSL 61

Query: 180 E---FVG-LGRLAFVERADCQGADNVSPFWASNTTRKCVL 216
           E    VG    LAFVE+ DCQGA NV+ FW    TRK  L
Sbjct: 62  EGEAIVGSFEYLAFVEQYDCQGATNVAGFWTLKATRKFAL 96

[Close]
BLAST of CmaCh14G004660 vs. ExPASy TrEMBL
Match: A0A6J1D0H8 (protein CHUP1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016154 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.4e-08
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 105 IAWGDTPLEPDPLPLPDPDPDPEAEPEPLLDPLPEPPPPPPPPPPPPL 153
           +AW D+PLEP P PLPDPDP+PEAEPEPLLDP P PPPPPPPPPPPPL
Sbjct: 1   MAWRDSPLEPHPPPLPDPDPEPEAEPEPLLDP-PPPPPPPPPPPPPPL 47

[Close]
BLAST of CmaCh14G004660 vs. NCBI nr
Match: KAG6580848.1 (hypothetical protein SDJN03_20850, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-59
Identity = 126/149 (84.56%), Postives = 131/149 (87.92%), Query Frame = 0 

Query: 81  PSITESRHLKIICGLGKAFLWFKPIAWGDTPLEPDPLPLPDPDPDPEAEPEPLLDPLPEP 140
           P I ++R   +    GKAFLWFKPIAWGDT LEPDPLPLPDPDPDPEAEPEPLLDPLPE 
Sbjct: 64  PCILKNRIGALNSRQGKAFLWFKPIAWGDTLLEPDPLPLPDPDPDPEAEPEPLLDPLPE- 123

Query: 141 PPPPPPPPPPPLGCCTAAR----LMLLLLLIKKMRKQKRREFWEFVGLGRLAFVERADCQ 200
            PPPPPPPPPPLGCCTAAR    L+LLLLLIKKMRKQKRRE+WEFVGLGRLAFVERADCQ
Sbjct: 124 -PPPPPPPPPPLGCCTAARLLLLLLLLLLLIKKMRKQKRREYWEFVGLGRLAFVERADCQ 183

Query: 201 GADNVSPFWASNTTRKCVLIVPISGAPGG 226
           GADNVSPFWASNTTRKC LIVPISGA GG
Sbjct: 184 GADNVSPFWASNTTRKCALIVPISGAAGG 210

[Close]
BLAST of CmaCh14G004660 vs. NCBI nr
Match: ADN33975.1 (hypothetical protein, partial [Cucumis melo subsp. melo])

HSP 1 Score: 102.1 bits (253), Expect = 6.9e-18
Identity = 66/100 (66.00%), Postives = 73/100 (73.00%), Query Frame = 0 

Query: 120 PDPDPDPEAEPEPLLDPLPEPPPPPPPPPPPPLGCCTAARLMLLLLLIKKMRKQKRREFW 179
           PDPDPDPEAEP PLLD LP+  PPPPPPPPPPLG CTAAR   LLL+IKKM+KQK+R+  
Sbjct: 2   PDPDPDPEAEPPPLLDALPD--PPPPPPPPPPLGRCTAAR---LLLIIKKMKKQKQRKSL 61

Query: 180 E---FVG-LGRLAFVERADCQGADNVSPFWASNTTRKCVL 216
           E    VG    LAFVE+ DCQGA NV+ FW    TRK  L
Sbjct: 62  EGEAIVGSFEYLAFVEQYDCQGATNVAGFWTLKATRKFAL 96

[Close]
BLAST of CmaCh14G004660 vs. NCBI nr
Match: XP_022147153.1 (protein CHUP1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-07
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 105 IAWGDTPLEPDPLPLPDPDPDPEAEPEPLLDPLPEPPPPPPPPPPPPL 153
           +AW D+PLEP P PLPDPDP+PEAEPEPLLDP P PPPPPPPPPPPPL
Sbjct: 1   MAWRDSPLEPHPPPLPDPDPEPEAEPEPLLDP-PPPPPPPPPPPPPPL 47

The following BLAST results are available for this feature:
BLAST of CmaCh14G004660 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G004660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
E5GBX53.4e-1866.00Uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV... [more]
A0A6J1D0H85.4e-0883.33protein CHUP1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016154... [more]
BLAST of CmaCh14G004660 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6580848.11.6e-5984.56hypothetical protein SDJN03_20850, partial [Cucurbita argyrosperma subsp. sorori... [more]
ADN33975.16.9e-1866.00hypothetical protein, partial [Cucumis melo subsp. melo][more]
XP_022147153.11.1e-0783.33protein CHUP1, chloroplastic-like [Momordica charantia][more]
BLAST of CmaCh14G004660 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..151
NoneNo IPR availableSUPERFAMILY101447Formin homology 2 domain (FH2 domain)coord: 141..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G004660.1CmaCh14G004660.1mRNA