CmaCh14G004490 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G004490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionType I restriction-modification systemmethyltransferase subunit
LocationCma_Chr14: 2139596 .. 2141954 (-)
RNA-Seq ExpressionCmaCh14G004490
SyntenyCmaCh14G004490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAAAAATTTAGAACCCAGGTTAGGTTTTATTCTTTTGCTTTCAATATTTTGAAAAAAAAAATTAGATCTATAAGGTTGCCATTTATTATTTTTCTCTCAAAATCCCTGTTGTGAGGAGCATCATGTTTATTAATTGTAATGAACATCCTATCACATTCACATCTTAATTCATCACTTCATTCATTCACTAAACCAAGCATTTCCCACTTCCTTATTATTCTCCCATATCTTTATCCATCAAATCTACAAACTATCAATAACTCTATGAGAGGGCCTGATTGGAAACTTGTTTGGAGAAGGAACTTGATTCCCAAATAGTGGGGTTTTTTTGGCCCTTCTTTAATGTGAAGATAAGAACACTTGTATTCTTTTGTAGGTTATCCCAATGGAATGATTAGGTTATGGGAATTTGGGGTTATTTTCTAATGGTCAAGTCGTAATCAATTGATGTTGATTTGTTTGAAGGATCAGTTCTGTTTAAATAATCTCCAGATAATATTCATGTCCCCAAATCTTTCTATAATCTCTTGGAAATGGATGCTTTTATTTTGGTTCTCTTTTGATATTTTGTTCTAAAAGTTGCATTATAGATGCTACTCCAATAAACTATTCACACTAGTTAAATACTAATCCTTCTAATCCCTAAAGCAAATAACTCAGACTCAAATATGATCATCTAAAACAAATGTAAAGTCAAAATAACATAATCTAATAATATAGTGAAGAGTCGAGATCCGAGGATAATAGAACTTTTCAATTTGTAAGAGATATCAAATCAAACTTCTTCCTATACCATAAACTATAATGATAAGTATCTAGTCTAGATCTAGCTCGATGGATAAAGACATTAATTTTTATATCAAAAGTCTGATGGTTCAATCCTTACCTTAGAATCTGTTGACCTTTCGAAGCATTAAGGAGTGACTTGCTCACGTAGTAGATTGAGATCTGTTCCTTAAATTACATATCAATCACCAGTAGTCGCCACATGAGCATTTTCCATCCTCAAACCGATGAAATCTGTTGTTGTCTCTAACAATGAGAACCCTTCCAGTGCATTTGGACATGAACTTTATAGCTGCATGACAATCACCACAAACACGCAAATTCTTCATAACTCTTATAGGTCTTCCTGGTGGGAAGGTAATCAGCCCGAACACAATGGCCAGTCTTTCGCTATGAAACCGAATCGTTTCGCTTTTCTCCTCACCGTCGACTGCTCGTAGCACAAAACTCGTGTCAGCAACATAGCCAGCTTCCGCCATTTCCTCCTCCAACTCTTCCAGTTTCTGATAAATCTCTACCCATCTAGCATGAGATCTATCACCTGCAGTGAATGTATGAACTTTATTTCCCTCCTCAACCCAGCTCAAACCCGTCTCCTTCTTCACTCCTCGATCGCGCAACAGTTTCCTCATCCGAGCCGCTTCTTCATATCTTCCAGCAGCAGCATATGCATTTGATAACAAAACATGTAAACCTGAGCTAGTACTATTCAATTCTAATACTCTTTCAGCCACAAAAGCTGCCATTTCTGTATCTTTATGGATTCTGCATCCTGTCAACAAAGCTCCCCAAACAGATTCAGTGGGCTGCATTGGCATTTGTTTGATCACAGAAACTGCTTCCTGTAACTTTCCAGCTCGTCCAAGCAAGTCCACCAAAGAGGCATAGTGCTGAGCTTCTGGTTCAATCCCATAATCTCTCATTAGATTGAAATATTCTCGCCCCTTTTCAACCAAACCTGCGTGGCTACAAGCATAAAGAACAGATAAAAAGGAAATGAAATTTGGTTTCATCCCCAAACTTCCCATTTCTTCAAATAAACCAAACACTCTCTCTGTATGAGCATGTTGAGCGCAGGCTATCAGTAGTGAATTCCACATGCCAAGGTTTCTGATGGGTATCTCATCAAAAACTTGATAAGCCCCTTCTATAATCCCACACTTGGAATACAAAGAAATCAAAGAACTCCCAACAAAGCTCGAGGAATCAAAGCTCATCTTCAAGCACAGTCCATGGATCTGCTTCCCCAATTCAAGAAGTGTGGAGCAGCTACAAACCCGAATCACACTGGAGAATGTGAAGTCGTTTACATCAACATCCTCAACCAAAGCTTGCTTGAACAATGTCAATGCCTCGCTACTCTCATCCAGTTGAGCATACCCACAAATCATTCCACTCCAAGACACCACATTCCTCTCAGGCATTTCGTCGAACACATGGCGGGCATCCCCAATCTCCCCACATTTTGCATACATATCCACCAGCGAACTTCCGACGAACACATCACAATCATATCCCGTCTTGACAACAAGACAATGTACAGATTTCCCAAGATCACTCCTACATAA

mRNA sequence

ATGTCGAAAAATTTAGAACCCAGCTCAAACCCGTCTCCTTCTTCACTCCTCGATCGCGCAACAGTTTCCTCATCCGAGCCGCTTCTTCATATCTTCCAGCAGCAGCATATGCATTTGATAACAAAACATAAACTGCTTCCTGTAACTTTCCAGCTCGTCCAAGCAAGTCCACCAAAGAGGCATAGTGCTGAGCTTCTGGTTTCTGATGGGTATCTCATCAAAAACTTGATAAGCCCCTTCTATAATCCCACACTTGGAATACAAAGAAATCAAAGAACTCCCAACAAAGCTCGAGGAATCAAAGCTCATCTTCAAGCACAGTCCATGGATCTGCTTCCCCAATTCAAGAAGTGTGGAGCAGCTACAAACCCGAATCACACTGGAGAATGTGAAGTCGTTTACATCAACATCCTCAACCAAAGCTTGCTTGAACAATGTCAATGCCTCGCTACTCTCATCCAGTTGAGCATACCCACAAATCATTCCACTCCAAGACACCACATTCCTCTCAGGCATTTCGTCGAACACATGGCGGGCATCCCCAATCTCCCCACATTTTGCATACATATCCACCAGCGAACTTCCGACGAACACATCACAATCATATCCCGTCTTGACAACAAGACAATGTACAGATTTCCCAAGATCACTCCTACATAA

Coding sequence (CDS)

ATGTCGAAAAATTTAGAACCCAGCTCAAACCCGTCTCCTTCTTCACTCCTCGATCGCGCAACAGTTTCCTCATCCGAGCCGCTTCTTCATATCTTCCAGCAGCAGCATATGCATTTGATAACAAAACATAAACTGCTTCCTGTAACTTTCCAGCTCGTCCAAGCAAGTCCACCAAAGAGGCATAGTGCTGAGCTTCTGGTTTCTGATGGGTATCTCATCAAAAACTTGATAAGCCCCTTCTATAATCCCACACTTGGAATACAAAGAAATCAAAGAACTCCCAACAAAGCTCGAGGAATCAAAGCTCATCTTCAAGCACAGTCCATGGATCTGCTTCCCCAATTCAAGAAGTGTGGAGCAGCTACAAACCCGAATCACACTGGAGAATGTGAAGTCGTTTACATCAACATCCTCAACCAAAGCTTGCTTGAACAATGTCAATGCCTCGCTACTCTCATCCAGTTGAGCATACCCACAAATCATTCCACTCCAAGACACCACATTCCTCTCAGGCATTTCGTCGAACACATGGCGGGCATCCCCAATCTCCCCACATTTTGCATACATATCCACCAGCGAACTTCCGACGAACACATCACAATCATATCCCGTCTTGACAACAAGACAATGTACAGATTTCCCAAGATCACTCCTACATAA

Protein sequence

MSKNLEPSSNPSPSSLLDRATVSSSEPLLHIFQQQHMHLITKHKLLPVTFQLVQASPPKRHSAELLVSDGYLIKNLISPFYNPTLGIQRNQRTPNKARGIKAHLQAQSMDLLPQFKKCGAATNPNHTGECEVVYINILNQSLLEQCQCLATLIQLSIPTNHSTPRHHIPLRHFVEHMAGIPNLPTFCIHIHQRTSDEHITIISRLDNKTMYRFPKITPT
Homology
[Close]
BLAST of CmaCh14G004490 vs. ExPASy TrEMBL
Match: A0A5A7R720 (Type I restriction-modification systemmethyltransferase subunit OS=Striga asiatica OX=4170 GN=STAS_29955 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.2e-11
Identity = 40/102 (39.22%), Postives = 52/102 (50.98%), Query Frame = 0 

Query: 111 LLPQFKKCGAATNPNHTGECEVVYINILNQSLLEQCQCLATLIQLSIPTNHSTPRHHIPL 170
           L  Q KK    TNPNH    ++V+     + + ++ Q L  L  L IP  H TPRHH+ L
Sbjct: 11  LFAQLKKSRVPTNPNHARVRKIVHFQTFTKRVFKEPQGLLVLPHLCIPIYHPTPRHHVFL 70

Query: 171 RHFVEHMAGIPNLPTFCIHIHQRTSDEHITIISRLDNKTMYR 213
            HFVEH+ GI   P F IHI  R    H      L  +T++R
Sbjct: 71  GHFVEHVPGITQHPAFRIHIDHRAPHVHALAEPNLHRQTVHR 112

[Close]
BLAST of CmaCh14G004490 vs. ExPASy TrEMBL
Match: I3SPB1 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-04
Identity = 25/45 (55.56%), Postives = 29/45 (64.44%), Query Frame = 0 

Query: 157 IPTNHSTPRHHIPLRHFVEHMAGIPNLPTFCIHIHQRTSDEHITI 202
           +PTNH  P H I LRH VE +AGIPN   F I   QR+SDE I +
Sbjct: 50  VPTNHGIPSHDISLRHCVEQLAGIPNDAAFSIRCDQRSSDEDIAV 94

[Close]
BLAST of CmaCh14G004490 vs. ExPASy TrEMBL
Match: A0A2P6Q6P0 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0018071 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 41/145 (28.28%), Postives = 59/145 (40.69%), Query Frame = 0 

Query: 57  PPKRHSAELLVSDGYLIKNLISPFYNPTLGIQRNQRTPNKARGIKAHLQAQSMDLLPQFK 116
           PP       L+   ++ +NL    +N TLGI   Q  P+    +KA+ +   M   P   
Sbjct: 63  PPHHSRKSNLIRLSHVTENLHCIPHNSTLGIHAQQSIPHIHILLKANFRHNPMTFPPLLH 122

Query: 117 KCGAATNPNHTGECEVVYINILNQSLLEQCQCLATLIQLSIPTNHSTPRHHIPLRHFVEH 176
               +T    T + ++     L    L     L  L      TN S PRH+IPLRHF + 
Sbjct: 123 IQQPSTRTEDTRQRKMRRHQPLGNHRLVNTHRLFLLTISGQSTNQSVPRHNIPLRHFQKQ 182

Query: 177 MAGIPNLPTFCIHIHQRTSDEHITI 202
           +  I   P+F I    R    HI +
Sbjct: 183 LLRIAQPPSFTITTQHRIPRVHIRL 207

[Close]
BLAST of CmaCh14G004490 vs. NCBI nr
Match: TKY62600.1 (product protein [Spatholobus suberectus])

HSP 1 Score: 109.8 bits (273), Expect = 3.1e-20
Identity = 51/142 (35.92%), Postives = 84/142 (59.15%), Query Frame = 0 

Query: 67  VSDGYLIKNLISPFYNPTLGIQRNQRTPNKARGIKAHLQAQSMDLLPQFKKCGAATNPNH 126
           V + +L+KNL++ F+NPTLG+QR QRT +KA  IK   +AQ M LLPQ K+ G+ TNP  
Sbjct: 294 VPNTHLLKNLVTSFHNPTLGVQRYQRTSHKAGRIKTRFKAQPMHLLPQLKQRGSTTNPQD 353

Query: 127 TGECEVVYINILNQSLLEQCQCLATLIQLSIPTNHSTPRHHIPLRHFVEHMAGIPNLPTF 186
             +CE++  ++  QS  E+ Q L    +L +   H+ P   + +RH VEH+A   ++ T 
Sbjct: 354 ARKCEIIDTHVFFQSTFEEVQSLLVEARLGVAVYHAAPGDDVSVRHLVEHLAREADVATL 413

Query: 187 CIHIHQRTSDEHITIISRLDNK 209
            + + +   DE + ++   + +
Sbjct: 414 GVGVEEGGGDEDVGVVGGFEGE 435

[Close]
BLAST of CmaCh14G004490 vs. NCBI nr
Match: GER52497.1 (type I restriction-modification systemmethyltransferase subunit [Striga asiatica])

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-10
Identity = 40/102 (39.22%), Postives = 52/102 (50.98%), Query Frame = 0 

Query: 111 LLPQFKKCGAATNPNHTGECEVVYINILNQSLLEQCQCLATLIQLSIPTNHSTPRHHIPL 170
           L  Q KK    TNPNH    ++V+     + + ++ Q L  L  L IP  H TPRHH+ L
Sbjct: 11  LFAQLKKSRVPTNPNHARVRKIVHFQTFTKRVFKEPQGLLVLPHLCIPIYHPTPRHHVFL 70

Query: 171 RHFVEHMAGIPNLPTFCIHIHQRTSDEHITIISRLDNKTMYR 213
            HFVEH+ GI   P F IHI  R    H      L  +T++R
Sbjct: 71  GHFVEHVPGITQHPAFRIHIDHRAPHVHALAEPNLHRQTVHR 112

[Close]
BLAST of CmaCh14G004490 vs. NCBI nr
Match: KAF7838276.1 (serine/threonine-protein kinase STY13-like isoform X2 [Senna tora])

HSP 1 Score: 61.6 bits (148), Expect = 9.6e-06
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 0 

Query: 102 AHLQAQSMDL----LPQFKKCGAATNPNHTGECEVVYINILNQSLLEQCQCLATLIQLSI 161
           + LQ  S+D+       F+     T   HT  C ++ I+I    L +Q Q L   I L+I
Sbjct: 368 SELQFLSIDIGVNPFTSFQSSENPTRVKHTNHCNLIRIHIRFLHLTKQTQSLVASICLTI 427

Query: 162 PTNHSTPRHHIPLRHFVEHMAGIPNLPTFCIHIHQRTSDEHITIIS 204
           P  HSTP ++IP+ H ++  +   +L TFCIH+ +R++   ITI++
Sbjct: 428 PRYHSTPCNNIPMLHLIKQYSCPVHLTTFCIHVKKRSN--QITIVT 471

[Close]
BLAST of CmaCh14G004490 vs. NCBI nr
Match: KAF7819427.1 (sulfite oxidase [Senna tora])

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-04
Identity = 27/88 (30.68%), Postives = 45/88 (51.14%), Query Frame = 0 

Query: 111 LLPQFKKCGAATNPNHTGECEVVYINILNQSLLEQCQCLATLIQLSIPTNHSTPRHHIPL 170
           +LP    CG          C   Y  +L Q LLE+ + + ++   S PT HS P +++  
Sbjct: 406 ILPPMPPCGG------EAACSSWYKLLLLQ-LLEEMKSIFSMTMSSQPTYHSIPSYNVSF 465

Query: 171 RHFVEHMAGIPNLPTFCIHIHQRTSDEH 199
            H ++H+  +PN+  FC+H++Q  S  H
Sbjct: 466 MHIIKHLLSVPNISIFCVHVNQCRSKNH 486

[Close]
BLAST of CmaCh14G004490 vs. NCBI nr
Match: AFK42103.1 (unknown [Lotus japonicus])

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-04
Identity = 25/45 (55.56%), Postives = 29/45 (64.44%), Query Frame = 0 

Query: 157 IPTNHSTPRHHIPLRHFVEHMAGIPNLPTFCIHIHQRTSDEHITI 202
           +PTNH  P H I LRH VE +AGIPN   F I   QR+SDE I +
Sbjct: 50  VPTNHGIPSHDISLRHCVEQLAGIPNDAAFSIRCDQRSSDEDIAV 94

The following BLAST results are available for this feature:
BLAST of CmaCh14G004490 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G004490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7R7208.2e-1139.22Type I restriction-modification systemmethyltransferase subunit OS=Striga asiati... [more]
I3SPB14.4e-0455.56Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
A0A2P6Q6P07.4e-0428.28Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0018071 PE=4... [more]
BLAST of CmaCh14G004490 vs. NCBI nr
Match NameE-valueIdentityDescription
TKY62600.13.1e-2035.92product protein [Spatholobus suberectus][more]
GER52497.11.7e-1039.22type I restriction-modification systemmethyltransferase subunit [Striga asiatica... [more]
KAF7838276.19.6e-0633.96serine/threonine-protein kinase STY13-like isoform X2 [Senna tora][more]
KAF7819427.16.9e-0430.68sulfite oxidase [Senna tora][more]
AFK42103.19.0e-0455.56unknown [Lotus japonicus][more]
BLAST of CmaCh14G004490 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G004490.1CmaCh14G004490.1mRNA