CmaCh14G003660 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G003660
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	33 kDa ribonucleoprotein, chloroplastic
Location	Cma_Chr14: 1659030 .. 1664092 (-)
RNA-Seq Expression	CmaCh14G003660
Synteny	CmaCh14G003660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAAGCAACCTTATCCAGTGGGATTTTTTGTCTTTCAATTTCAAAGCTCCCCAATCCAATCCCCAAAATCCATCCCTGTAACTTGGGATTCCGCCATCTCCGACTTCTACTACTGTTTTCTTACTCAATGTCAGCTTCTTCTCTCACAATGGCTGCTGCTGCAGCTTCAGTTTCCTCTTCTTCTTCTTCTTCTTCTTCATCACCCTGCAAGAAACTCTTCTTCTTCACCCAGCTTCCCAACCGAATTCCCTCCCATTTCTCTCCAAAACCGAAGCCATTGAAGCTTCTCGAGCTCAGAATCCATTTACCCAACTTTTACCCTCTTGCTTTCTCCTCCGCTTCTCATCTCTACTGTGCTCCTCCTGCATTCGAGGGACTCGAAGTCTCCGACCCTATATCAGAAAACGCAGAGACCGAAGAATCGGATGGAAAAGAAGAAAGCCGGGAGGAAGACGAACAAAAGGTATCGGCATCTCGCGACGCAGGGAAGCTTTATATTGGAAATTTACCATATGCTATGACCTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCCGGTCATGTGGTTTCTGTACAGGTTTGTGATTGATCTAGCTTCTTTTTGTTTTACCTTTATCCGTCTGAATCCATTCTTCTAGGGCTTATTGGAGCTGCTTAGCCATTGTTGGTTTCTTATGTGATTTTCTTCCGGATCTTCTGTTAGGTTATTTATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGACGGCTCTGTAACTACTTCTTATTCTTTCTCTCTTCATTTCATTTTGTCTTCGCTTAACAATTGTGGTGGAAACTAGGGATGGATATCCAGTTTGTTCAGCTTAACTTAACTTACTGATGGTTGCTGATTGATAACACCTTAAAGCTGAATCTTGCTGAGAGAAAAAAAGTTGCCTCTATAAAACACTAACTTAAGTAAATCATTCTCAATGAAACAAAACTTTGGAGAAAGTCCAAACCTGTAGGCAAATTCTGATGTTTGGGTGTAACATCTGATAAATGTAAATGATGGTAGTGCTTTTCCATTGATTGAATGGAAGCATAGCCATCTAGTGTTGGCATTGTTGGTGTCTTTGTGGGATTAGATGATATAATGTTAGAGTTAGTCTATAACAACCCAAGCCCACCGCTAGTAGATATTACGCTCTTTGGGCTTTCCCTTTCAAGATTCCCCTCAAGGTTTTTAAAACACGTTTGTTAGGGAGAGGAGAACGAAGCATGATTTCCCTCAAGGTTTTTACGCCTTATAAAGAATACTTTGTTTCCCTCTCTATGCGATGTGGGATCTCACAATCTACCCCTTTGGGGCCACTCGCTCAAATTTGTTATCTCACATAGTCATTAGTGTATGATTCTTATGCACTAGAGTTTACAAATGCTTGGGCCTCTAATAGTTTAAACACCACATTATGATATCTCTAAATGATTGAGTAATGTATTGATTGTTAGATATTGTTGCTATAAAGTTGCTAATGGATGAATTACTTGTCAGCTAATTGGTGGGCGAACTGTTCGGGTGAACTTCCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATTAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAGATATATGCAGGTAACCTTGGTTGGGGACTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGAGTCTGGAAGAAGTCGAGGTTTTGGATTTGTATCTTTTGAAACTGCCGAGGATGCAGAGTCTGCTTTGGATTCCATGAACGGAGTGGTAAGAAAGTGGAGTTACTTTTCAATATGATTTTAGAGATTAGACATGATGAACTTGTGACAGAATTTACTGATGTAATTGATCCTGAACTACATTATAAGCTACCTCTAAATGGCCGATGTTTACAATGCATAAACATAAACCAGAATTAGATTAGTTTAGAAAAGGCCATGAGAAAATGTACCTGCATTTTGTACAATCATTCCTGTGTTATTGACTTCTTCCATGCAAATATGCTACCAGGAAGTTGAAGGGCGACCACTTCGTTTGAACATGGCTGCAGACCGGGCCCCAACTTCTCCAGCAGCATTCACAAGGACTGAGAATACCATCGACAGCAATGAATTGCTTACAAGTATCAGTGCCTGAAATCTGATGTTGATAGTTGATTTGGCCCAAAAATTAAACTGAAACTGAAGGCTAGGGACTGTTCTTCAAATTGAATACCTTCAGGATTTCCCTCGCAATTCTCTTTCATTCCTTGCTCAACGACCAAGGAAGCATATGTTTTTTTTTTTTTTTCATTGAGTGATGTGAGTTGAGGGAAAGTGCTAAATTGTTGCCGCAGATTAACGAGTATTTTATGTATGACTTCAGAATTGGACTCTTATGTATTATGGAGTCTCTTTTCTCCGAGTTAGTACTACAATACATCAGTCTCTCAGCCTTTTCTTCCATTATCTTTGCTAATTGTAACTATGACCACTAATTGTTTGTCATCTCTCTCCCTCCCTACTGAGAATTAACAATTCAAGTGCCAAGAATTGCTCCCAAGAAAAAAGGATTCTGAAAAGCTGGAGTCATAATGATGAAAGAAAGTTAACATTTTGGAGAAAAATGTGCTTATGCTTCCAAAACTAATGGTGTGTAAAAATTGTAGACTTTAACAGAAAGTAGGTTTTTCAGATTTATACTAATTTTTTTCATCAAGAACATGAGAACCAGCAAGGAGGGCATCTGCTGCAGAGTCCAGGTCTTGAGGAAAGAAAACTCTGCAAAATAGACCAACCCAAGTAGAGAGAGAAAACAGTAAGACTCTATGAATAACGTTGCGGTCTTGCAGAAAATCTAGAAGTATTTGTATGAATTATGATATTATCTCATTCTTGGAAATACATGATACCTGCAAGTATTGTGGTACAAAGTTTCACTAAGCTGATTGATATCTGTAATGCCTTTGCATCCAGCCATGACCTCAAGAACTTGCCTGAAAAAACATGGCAAAATCTTAGAAATGTAATAAATCGCATCAATCACAAGCCTTCCTTTAAAAACACTACCAAGGAAAAATGTCTAGAAACAAACAATGAAGGGATCGACACAGGAAGAGTTCCATTTTAACAAGCTTCATCAGCAACAAAGAAAAAAATGATCTATCGTACTTTGAAGACTGTCCTTGTTAACAAATCAACCAAGAACGAACGCTTCTAATCAACCAATAAAGTCAACAAATCTCGTAAGGAAATCAACAGAGCTCACTATTGTAACTTCTGATTCAAAATAGAAGAGAGCTAAAAGAAGAAACATTGGCTCCAATAATGCATCTTATCCTCCCAACTCATATTAGAAGTTTGCAAAACTTGGTTCTTTTGTAATTTGAGAATTTGCACAAAGTATGATGGTAGTTCTTTCATATTTCTCCTCACAGGCATATATAGTTGGTCACTAAAACTAGAAGCAATTTTTATCTATCAAATGATTATGTTTCCTCTGAAAAAAATAAACCTAGAAGCAATTATTGAAAGGCATTTTCCTGTATGATGATATAAACAACTGTTAAAATGTAAAAAGGAATGCGATTTGAGGAAAAGAACAACAATAAAATACAAAGTATCTTACCGAACTAAACATGGTTCATTCCGGCCTTTCACTATGCACTGCTCGTCATGCTTCTCTTTCTTCTTAGAAGCCCAGACAGACTTAACAAACTTAATCCCAGCATGTGTATTCTTGATTTCACAATACGGAGAGTCCGTCTCAATCATCAATCTCTCAATTGGTATACCCCTCACGACATCAAGGTTTTCCGCAGTTTTCAGGGAGCAACCATTAATCCCTGTTTAGAAGTTGCAATTAATTTGGGGTATGAAATTTAAGAGAAAAATAAATAAAGAAAGAAATAAAGCTGGAAGGATGAACAAGTGGCAATCACCTATGTACAAATTACTGAATAGCAGAAGCCTGTCACGATCTTCTGCACTATCTGTGAAAGAATGAACAACTCCAGCACAAAACCTATGCAACAAGCATAAATAGCATGATCAACATCCGTGCAATCAGAAATGAAAGCAGCTAATTTTTGCAAGTTCCTAATCATTTATGAGAATTGCAATAATCGAAAGGAAATGAGGAAAATGAAAAGTATACACATGTAATACTTGAACTGTATTCTTTAACAGTGCAACTCGGTTAGCCTTTTTAAGTTTATGCCCGTATAATTGTCTCTTTTCTCCTCTCAGCCAAAAGAAAAAGATATGTGATGTATGAATGCTTATACATATATGTATTTCTTTTCTCTCTTATAATGTGTATGAAAGATAATTACATCCACCTCAAGTTTGTTCTTTCTTTGCTATGAGGAAATAATTTTATTTCCCTTTCATTTATGTCCATTTTATTGTTTCTATCATTTCCTTTACAATTTCTTCTGAAAGAAAAGCTGGTGGTCATCAAATGTGTATATATATCAGAGAACTGAATAATTTACACAAAAATAAATTGGATCCCAGCATATTGCTTGCACAGATATGTCCCTGTTGAAATAATTGATGTTTTTGCTCTTGGTGCTTATAGTTTTATTCCTCAAAACCGTTATCTTGTTTCTAAGTTTCAATTTCAAATCCAGATGATTAGTGCCTTAAATCTAGAAAATTTTAAGATGGTACAGGTTTGGTTCTCTCATTAGTTTAGAAGCCTGACCTTTGCTTATTTCTCTCTACAATACCACAAAAATCCTCAGCAGCTGCACGCATGTGTAGAAACATAGGAAGCTTTGTTGCGTTTGCTAATTCAAACTGCTTCTCGAAATATCTACAATTGCACAGCTCAGAAATAAATAGCCAATTCTATAATACAAGACTGCATCTGTTGGATTGCAGAAAATGTAATACATAACATGGGATCTGAAGAATATTCTTCTCAGTGAATACTTACTTCTTTTGAACATCGGCAGGGCAAAAGTGA

mRNA sequence

ATCAAAGCAACCTTATCCAGTGGGATTTTTTGTCTTTCAATTTCAAAGCTCCCCAATCCAATCCCCAAAATCCATCCCTGTAACTTGGGATTCCGCCATCTCCGACTTCTACTACTGTTTTCTTACTCAATGTCAGCTTCTTCTCTCACAATGGCTGCTGCTGCAGCTTCAGTTTCCTCTTCTTCTTCTTCTTCTTCTTCATCACCCTGCAAGAAACTCTTCTTCTTCACCCAGCTTCCCAACCGAATTCCCTCCCATTTCTCTCCAAAACCGAAGCCATTGAAGCTTCTCGAGCTCAGAATCCATTTACCCAACTTTTACCCTCTTGCTTTCTCCTCCGCTTCTCATCTCTACTGTGCTCCTCCTGCATTCGAGGGACTCGAAGTCTCCGACCCTATATCAGAAAACGCAGAGACCGAAGAATCGGATGGAAAAGAAGAAAGCCGGGAGGAAGACGAACAAAAGGTATCGGCATCTCGCGACGCAGGGAAGCTTTATATTGGAAATTTACCATATGCTATGACCTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCCGGTCATGTGGTTTCTGTACAGGTTATTTATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGACGGCTCTCTAATTGGTGGGCGAACTGTTCGGGTGAACTTCCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATTAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAGATATATGCAGGTAACCTTGGTTGGGGACTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGAGTCTGGAAGAAGTCGAGGTTTTGGATTTGTATCTTTTGAAACTGCCGAGGATGCAGAGTCTGCTTTGGATTCCATGAACGGAGTGGAAGTTGAAGGGCGACCACTTCGTTTGAACATGGCTGCAGACCGGGCCCCAACTTCTCCAGCAGCATTCACAAGGACTGAGAATACCATCGACAGCAATGAATTGCTTACAAGGCAAAAGTGA

Coding sequence (CDS)

ATGTCAGCTTCTTCTCTCACAATGGCTGCTGCTGCAGCTTCAGTTTCCTCTTCTTCTTCTTCTTCTTCTTCATCACCCTGCAAGAAACTCTTCTTCTTCACCCAGCTTCCCAACCGAATTCCCTCCCATTTCTCTCCAAAACCGAAGCCATTGAAGCTTCTCGAGCTCAGAATCCATTTACCCAACTTTTACCCTCTTGCTTTCTCCTCCGCTTCTCATCTCTACTGTGCTCCTCCTGCATTCGAGGGACTCGAAGTCTCCGACCCTATATCAGAAAACGCAGAGACCGAAGAATCGGATGGAAAAGAAGAAAGCCGGGAGGAAGACGAACAAAAGGTATCGGCATCTCGCGACGCAGGGAAGCTTTATATTGGAAATTTACCATATGCTATGACCTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCCGGTCATGTGGTTTCTGTACAGGTTATTTATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGACGGCTCTCTAATTGGTGGGCGAACTGTTCGGGTGAACTTCCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATTAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAGATATATGCAGGTAACCTTGGTTGGGGACTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGAGTCTGGAAGAAGTCGAGGTTTTGGATTTGTATCTTTTGAAACTGCCGAGGATGCAGAGTCTGCTTTGGATTCCATGAACGGAGTGGAAGTTGAAGGGCGACCACTTCGTTTGAACATGGCTGCAGACCGGGCCCCAACTTCTCCAGCAGCATTCACAAGGACTGAGAATACCATCGACAGCAATGAATTGCTTACAAGGCAAAAGTGA

Protein sequence

MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHLPNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAPTSPAAFTRTENTIDSNELLTRQK

Homology

[Close]

BLAST of CmaCh14G003660 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 6.3e-81
Identity = 170/325 (52.31%), Postives = 224/325 (68.92%), Query Frame = 0


Query: 8   MAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPK------PLKLLELRIHLP 67
           M+    S ++++S+SS+S    L+ FTQ P     H S           +   +L+ H P
Sbjct: 1   MSGCCFSFAATASTSSTS---LLYLFTQKPKFSVDHLSLSTYNTHFNFKINSTKLKAHFP 60

Query: 68  NFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAGK 127
                 + S+  L       +G+EV     E      ++ +EE  E++E+  S S + G+
Sbjct: 61  --ISSLYRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGR 120

Query: 128 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 187
           LY+GNLP++MTSSQL+E+FAEAG V +V+++YD+VTDRSRGFAFVTM ++EEAKEAIR+F
Sbjct: 121 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 180

Query: 188 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 247
           DGS +GGRTV+VNFPEVPRGGE+EVM  KIRS+Y  FVDSPHK+Y  NL W LTSQ LR+
Sbjct: 181 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRD 240

Query: 248 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 307
           AF +QPG +SAKVIYDR SGRSRGFGF++F +AE   SALD+MN VE+EGRPLRLN+A  
Sbjct: 241 AFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQ 300

Query: 308 RAPTS--PAAFTRTENTIDSNELLT 325
           +AP S  P   T  EN  D++ELL+
Sbjct: 301 KAPVSSPPVVETSPENDSDNSELLS 320

[Close]

BLAST of CmaCh14G003660 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.1e-76
Identity = 167/334 (50.00%), Postives = 227/334 (67.96%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60
           MS++  + A A ++ +++SS+++ +P       +QL  R    F+PK       +L  + 
Sbjct: 1   MSSAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYR----FTPKS-----FKLVANC 60

Query: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAE-----TEESDGKEESREEDEQKVSA 120
           PN   L  +   H +      E     D I  + E      EE D  EE  EE++Q   A
Sbjct: 61  PNPLILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQA 120

Query: 121 SRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAK 180
           S + G+LY+GNLPY +TSS+L+++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAK
Sbjct: 121 SGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAK 180

Query: 181 EAIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLT 240
           EA++MF+ S IGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LT
Sbjct: 181 EAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLT 240

Query: 241 SQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLR 300
           SQ L++AF +QPG+L AKVIY+R +GRSRGFGF+SFE+AE+ +SAL +MNGVEVEGR LR
Sbjct: 241 SQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALR 300

Query: 301 LNMAADR-----APTSPAAFTRTENTIDSNELLT 325
           LN+A++R     +P S       E +++SNE+L+
Sbjct: 301 LNLASEREKPTVSPPSVEEGETEEASLESNEVLS 325

[Close]

BLAST of CmaCh14G003660 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.7e-39
Identity = 112/300 (37.33%), Postives = 164/300 (54.67%), Query Frame = 0


Query: 20  SSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHLPNFYPLAFSSASHLYCAPP 79
           +SSS S  + LF   Q P+ +        KP   L       +   L+ SS+S   C+  
Sbjct: 2   ASSSVSSLQFLFVTPQTPSSL--------KPNSTLSFFSLPSSSLNLSLSSSSTGLCSIK 61

Query: 80  AFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEV 139
            FE        S        D  E+  E  EQ    S D  KL++GNLP+++ S+ L  +
Sbjct: 62  PFE-----SSFSTRVALSGFDQLEDDVEVAEQP-RFSEDL-KLFVGNLPFSVDSAALAGL 121

Query: 140 FAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNFPEVP 199
           F  AG+V  V+VIYDK+T RSRGF FVTM+T EE + A + F+G  I GR +RVN    P
Sbjct: 122 FERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAP 181

Query: 200 -----------RGGEKEVMGPKIRSSY------NKFVDSPHKIYAGNLGWGLTSQSLREA 259
                      RGG     G +  +S        + VDS +++Y GNL WG+   +L+E 
Sbjct: 182 AKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKEL 241

Query: 260 FENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADR 303
           F  Q  ++ AKV+YDR+SGRSRGFGFV++ ++++   A+DS+NGV+++GR +R++ A +R
Sbjct: 242 FSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286

[Close]

BLAST of CmaCh14G003660 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.0e-38
Identity = 114/305 (37.38%), Postives = 164/305 (53.77%), Query Frame = 0


Query: 20  SSSSSSPCKKLFFFTQL-----PNRIPSHFSPKPKPLKLLELRIHLPNFYPLAFSSASHL 79
           +SSS S  + LF  +Q      PN   S FS     L L            L+ SS  H 
Sbjct: 2   ASSSVSSLQFLFVTSQTPSSLKPNSTLSFFSLPSSSLNL-----------SLSSSSIGHS 61

Query: 80  YCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAGKLYIGNLPYAMTSS 139
               P FE        S      + D  E+  E  EQ    S D  KL++GNLP+++ S+
Sbjct: 62  ASIKP-FE-----SSFSTRVALSDFDQLEDDVEVAEQP-RFSEDL-KLFVGNLPFSVDSA 121

Query: 140 QLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVN 199
            L  +F  AG+V  V+VIYDK++ RSRGF FVTM+T EE + A + F+G  I GR +RVN
Sbjct: 122 ALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 181

Query: 200 FPEVP-----------RGGEKEVMGPKIRSSY------NKFVDSPHKIYAGNLGWGLTSQ 259
               P           RGG     G +  +S        + VDS +++Y GNL WG+   
Sbjct: 182 AGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDL 241

Query: 260 SLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLN 303
           +L+E F  Q  ++ AKV+YDR+SGRSRGFGFV++ +A++   A+DS+NG++++GR +R++
Sbjct: 242 ALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVS 287

[Close]

BLAST of CmaCh14G003660 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.6e-38
Identity = 104/283 (36.75%), Postives = 155/283 (54.77%), Query Frame = 0


Query: 24  SSPCKKLFFFTQLPNRIPSHFSPKP-KPLKLLELRIHLPNFYPLAFSSASHLYCAPPAFE 83
           +S    L F +  P  +P    PKP      L      P+   L+ SS+S   C    F 
Sbjct: 2   ASSASSLHFLSLTPQTLP---LPKPTSQTTSLSFFSLPPSSLNLSLSSSSS--CFSSRFV 61

Query: 84  GLEVSDPISENAETEE-SDGKEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFA 143
                    +  + E+  DG EE R       + S D  K+++GNLP++  S+ L E+F 
Sbjct: 62  RKVTLSDFDQIEDVEDGDDGVEEER-------NFSPDL-KIFVGNLPFSADSAALAELFE 121

Query: 144 EAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNFPEVPRG 203
            AG+V  V+VIYDK+T RSRGF FVTM++ EE + A + F+G  + GR +RVN    P  
Sbjct: 122 RAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEK 181

Query: 204 GEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESG 263
            E        R   +   DS +++Y GNL WG+   +L   F  Q  ++ AKV+YDR+SG
Sbjct: 182 RENSSFRGGSRGGGS--FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSG 241

Query: 264 RSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAP 305
           RSRGFGFV++ +AE+  +A++S++GV++ GR +R++ A  R P
Sbjct: 242 RSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269

[Close]

BLAST of CmaCh14G003660 vs. ExPASy TrEMBL
Match: A0A6J1J651 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481694 PE=4 SV=1)

HSP 1 Score: 614.8 bits (1584), Expect = 2.1e-172
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60
           MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60

Query: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120
           PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG
Sbjct: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLT 325
           DRAPTSPAAFTRTENTIDSNELLT
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLT 324

[Close]

BLAST of CmaCh14G003660 vs. ExPASy TrEMBL
Match: A0A6J1F948 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441950 PE=4 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 7.3e-165
Identity = 315/324 (97.22%), Postives = 317/324 (97.84%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60
           MSASSLTMAAAAASVSSSSSSSSSSPCKKLFF   L NRIPSHFSPK KPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHL-NRIPSHFSPKQKPLKLLELRIHL 60

Query: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120
           PN YPLAFSSASHLYCAPPAFEGLEVSDPI+E+AETEESDG EESREEDEQKVSASRDAG
Sbjct: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLT 325
           DRAPTSPAAFTRTENTIDSNELLT
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLT 323

[Close]

BLAST of CmaCh14G003660 vs. ExPASy TrEMBL
Match: A0A1S3B7N1 (33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 2.5e-141
Identity = 270/324 (83.33%), Postives = 292/324 (90.12%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60
           MSA SL  AAAAA       S+SSSP  K  FFTQ PN+IPSHFSPK   LKLL L IHL
Sbjct: 1   MSAYSLAAAAAAA-------SASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHL 60

Query: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120
           PNFYPL+FSS SH++CAPPAF+ LE+SDP +E  + +ESDG+E+++EEDEQK+S SR+AG
Sbjct: 61  PNFYPLSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           +AFENQPGILSAKVIYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+AA
Sbjct: 241 DAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLT 325
           +RAPTSPAAF RTENTIDS ELLT
Sbjct: 301 ERAPTSPAAFPRTENTIDSKELLT 317

[Close]

BLAST of CmaCh14G003660 vs. ExPASy TrEMBL
Match: A0A5D3DPZ1 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004690 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 3.3e-141
Identity = 270/324 (83.33%), Postives = 292/324 (90.12%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60
           MSA SL  AAAAA       S+SSSP  K  FFTQ PN+IPSHFSPK   LKLL L IHL
Sbjct: 1   MSAYSLAAAAAAA-------SASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHL 60

Query: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120
           PNFYPL+FSS SH++CAPPAF+ LE+SDP +E  + +ESDG+E+++EEDEQK+S SR+AG
Sbjct: 61  PNFYPLSFSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           +AFENQPGILSAKVIYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+AA
Sbjct: 241 DAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLT 325
           +RAPTSPAAF RTENTIDS ELLT
Sbjct: 301 ERAPTSPAAFPRTENTIDSKELLT 317

[Close]

BLAST of CmaCh14G003660 vs. ExPASy TrEMBL
Match: A0A5A7TK11 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001350 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 3.3e-141
Identity = 270/324 (83.33%), Postives = 292/324 (90.12%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60
           MSA SL  AAAAA       S+SSSP  K  FFTQ PN+IPSHFSPK   LKLL L IHL
Sbjct: 48  MSAYSLAAAAAAA-------SASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHL 107

Query: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120
           PNFYPL+FSS SH++CAPPAF+ LE+SDP +E  + +ESDG+E+++EEDEQK+S SR+AG
Sbjct: 108 PNFYPLSFSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAG 167

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 168 KLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 227

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 228 FDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 287

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           +AFENQPGILSAKVIYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+AA
Sbjct: 288 DAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA 347

Query: 301 DRAPTSPAAFTRTENTIDSNELLT 325
           +RAPTSPAAF RTENTIDS ELLT
Sbjct: 348 ERAPTSPAAFPRTENTIDSKELLT 364

[Close]

BLAST of CmaCh14G003660 vs. NCBI nr
Match: XP_022983024.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 614.8 bits (1584), Expect = 4.4e-172
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60
           MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60

Query: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120
           PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG
Sbjct: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLT 325
           DRAPTSPAAFTRTENTIDSNELLT
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLT 324

[Close]

BLAST of CmaCh14G003660 vs. NCBI nr
Match: XP_022934919.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata] >XP_022934920.1 33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 589.7 bits (1519), Expect = 1.5e-164
Identity = 315/324 (97.22%), Postives = 317/324 (97.84%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60
           MSASSLTMAAAAASVSSSSSSSSSSPCKKLFF   L NRIPSHFSPK KPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHL-NRIPSHFSPKQKPLKLLELRIHL 60

Query: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120
           PN YPLAFSSASHLYCAPPAFEGLEVSDPI+E+AETEESDG EESREEDEQKVSASRDAG
Sbjct: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLT 325
           DRAPTSPAAFTRTENTIDSNELLT
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLT 323

[Close]

BLAST of CmaCh14G003660 vs. NCBI nr
Match: KAG7017509.1 (hypothetical protein SDJN02_19374 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 585.9 bits (1509), Expect = 2.2e-163
Identity = 314/324 (96.91%), Postives = 316/324 (97.53%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60
           MSASSLTMAAAAASVSSSSSSSSSSPCKKLFF   L NRIPS FSPK KPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHL-NRIPSRFSPKQKPLKLLELRIHL 60

Query: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120
           PN YPLAFSSASHLYCAPPAFEGLEVSDPI+E+AETEESDG EESREEDEQKVSASRDAG
Sbjct: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLT 325
           DRAPTSPAAFTRTENTIDSNELLT
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLT 323

[Close]

BLAST of CmaCh14G003660 vs. NCBI nr
Match: KAG6580756.1 (hypothetical protein SDJN03_20758, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 584.3 bits (1505), Expect = 6.4e-163
Identity = 315/325 (96.92%), Postives = 317/325 (97.54%), Query Frame = 0


Query: 1   MSASSLTMAAAAASV-SSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIH 60
           MSASSLTMAAAAASV SSSSSSSSSSPCKKLFF   L NRIPSHFSPK KPLKLLELRIH
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHL-NRIPSHFSPKQKPLKLLELRIH 60

Query: 61  LPNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDA 120
           LPN YPLAFSSASHLYCAPPAFEGLEVSDPI+E+AETEESDG EESREEDEQKVSASRDA
Sbjct: 61  LPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDA 120

Query: 121 GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180
           GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR
Sbjct: 121 GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180

Query: 181 MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240
           MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL
Sbjct: 181 MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240

Query: 241 REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA 300
           REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA
Sbjct: 241 REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA 300

Query: 301 ADRAPTSPAAFTRTENTIDSNELLT 325
           ADRAPTSPAAFTRTENTIDSNELLT
Sbjct: 301 ADRAPTSPAAFTRTENTIDSNELLT 324

[Close]

BLAST of CmaCh14G003660 vs. NCBI nr
Match: XP_023527627.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 583.9 bits (1504), Expect = 8.3e-163
Identity = 315/328 (96.04%), Postives = 317/328 (96.65%), Query Frame = 0


Query: 1   MSASSLTMAAAAASV----SSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLEL 60
           MSASSLTMAAAAASV    SSSSSSSSSSPCKKLFF   L NRIPSHFSPK KPLKLLEL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSSSSSPCKKLFFAQHL-NRIPSHFSPKQKPLKLLEL 60

Query: 61  RIHLPNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSAS 120
           RIHLPN YPLAFSSASHLYCAPPAFEGLEVSDPI+E+AETEESDG EESREEDEQKVSAS
Sbjct: 61  RIHLPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSAS 120

Query: 121 RDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKE 180
           RDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKE
Sbjct: 121 RDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKE 180

Query: 181 AIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTS 240
           AIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTS
Sbjct: 181 AIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTS 240

Query: 241 QSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRL 300
           QSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRL
Sbjct: 241 QSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRL 300

Query: 301 NMAADRAPTSPAAFTRTENTIDSNELLT 325
           NMAADRAPTSPAAFTRTENTIDSNELLT
Sbjct: 301 NMAADRAPTSPAAFTRTENTIDSNELLT 327

[Close]

BLAST of CmaCh14G003660 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 287.3 bits (734), Expect = 1.5e-77
Identity = 167/334 (50.00%), Postives = 227/334 (67.96%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60
           MS++  + A A ++ +++SS+++ +P       +QL  R    F+PK       +L  + 
Sbjct: 1   MSSAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYR----FTPKS-----FKLVANC 60

Query: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAE-----TEESDGKEESREEDEQKVSA 120
           PN   L  +   H +      E     D I  + E      EE D  EE  EE++Q   A
Sbjct: 61  PNPLILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQA 120

Query: 121 SRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAK 180
           S + G+LY+GNLPY +TSS+L+++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAK
Sbjct: 121 SGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAK 180

Query: 181 EAIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLT 240
           EA++MF+ S IGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LT
Sbjct: 181 EAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLT 240

Query: 241 SQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLR 300
           SQ L++AF +QPG+L AKVIY+R +GRSRGFGF+SFE+AE+ +SAL +MNGVEVEGR LR
Sbjct: 241 SQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALR 300

Query: 301 LNMAADR-----APTSPAAFTRTENTIDSNELLT 325
           LN+A++R     +P S       E +++SNE+L+
Sbjct: 301 LNLASEREKPTVSPPSVEEGETEEASLESNEVLS 325

[Close]

BLAST of CmaCh14G003660 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-38
Identity = 89/227 (39.21%), Postives = 140/227 (61.67%), Query Frame = 0


Query: 90  ISENAETEESDGKEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSV 149
           I+   E EE DG  +     EQ  SA     KL++GNLP+ + S+QL ++F  AG+V  V
Sbjct: 65  ITSEFEVEE-DGFADVAPPKEQSFSADL---KLFVGNLPFNVDSAQLAQLFESAGNVEMV 124

Query: 150 QVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGEKEVMG 209
           +VIYDK+T RSRGF FVTM+++ E + A + F+G  + GR +RVN  P  P+  +    G
Sbjct: 125 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRG 184

Query: 210 PKIRSSYNKF-----------VDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYD 269
           P  RSS+                S +++Y GNL WG+   +L   F  Q  ++ A+VIYD
Sbjct: 185 P--RSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYD 244

Query: 270 RESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAP 305
           R+SGRS+GFGFV+++++++ ++A+ S++G +++GR +R++ A  R P
Sbjct: 245 RDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285

[Close]

BLAST of CmaCh14G003660 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 140.2 bits (352), Expect = 3.0e-33
Identity = 104/332 (31.33%), Postives = 161/332 (48.49%), Query Frame = 0


Query: 42  SHFSPKPKPLKL------------LELRIHLPNFYPLAFSSASHLYCAPPA-FEGLEVSD 101
           S F+PK  PL +            L  ++H  +   +  SSA  L C+ PA +    V +
Sbjct: 9   SAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSA--LKCSSPAEYPSRFVRN 68

Query: 102 -PISENAETEESDGKEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVV 161
             +S + E EE D   +  +    + ++     KL++GNL + + S+QL ++F  AG+V 
Sbjct: 69  VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVE 128

Query: 162 SVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGEKEV 221
            V+VIYDKVT RSRGF FVTM+T  E + A + F+G    GR +RVN  P  P+  E   
Sbjct: 129 MVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFS 188

Query: 222 MGPKI------------------------------------------------RSSY--- 281
            GP+                                                 RSSY   
Sbjct: 189 RGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSG 248

Query: 282 ---NKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFE 305
                   S +++Y GNL WG+   +L   F  Q  ++ A+VIYDR+SGRS+GFGFV+  
Sbjct: 249 SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLS 308

[Close]

BLAST of CmaCh14G003660 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 140.2 bits (352), Expect = 3.0e-33
Identity = 104/332 (31.33%), Postives = 161/332 (48.49%), Query Frame = 0


Query: 42  SHFSPKPKPLKL------------LELRIHLPNFYPLAFSSASHLYCAPPA-FEGLEVSD 101
           S F+PK  PL +            L  ++H  +   +  SSA  L C+ PA +    V +
Sbjct: 9   SAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSA--LKCSSPAEYPSRFVRN 68

Query: 102 -PISENAETEESDGKEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVV 161
             +S + E EE D   +  +    + ++     KL++GNL + + S+QL ++F  AG+V 
Sbjct: 69  VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVE 128

Query: 162 SVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGEKEV 221
            V+VIYDKVT RSRGF FVTM+T  E + A + F+G    GR +RVN  P  P+  E   
Sbjct: 129 MVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFS 188

Query: 222 MGPKI------------------------------------------------RSSY--- 281
            GP+                                                 RSSY   
Sbjct: 189 RGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSG 248

Query: 282 ---NKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFE 305
                   S +++Y GNL WG+   +L   F  Q  ++ A+VIYDR+SGRS+GFGFV+  
Sbjct: 249 SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLS 308

[Close]

BLAST of CmaCh14G003660 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 140.2 bits (352), Expect = 3.0e-33
Identity = 104/332 (31.33%), Postives = 161/332 (48.49%), Query Frame = 0


Query: 42  SHFSPKPKPLKL------------LELRIHLPNFYPLAFSSASHLYCAPPA-FEGLEVSD 101
           S F+PK  PL +            L  ++H  +   +  SSA  L C+ PA +    V +
Sbjct: 9   SAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSA--LKCSSPAEYPSRFVRN 68

Query: 102 -PISENAETEESDGKEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVV 161
             +S + E EE D   +  +    + ++     KL++GNL + + S+QL ++F  AG+V 
Sbjct: 69  VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVE 128

Query: 162 SVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGEKEV 221
            V+VIYDKVT RSRGF FVTM+T  E + A + F+G    GR +RVN  P  P+  E   
Sbjct: 129 MVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFS 188

Query: 222 MGPKI------------------------------------------------RSSY--- 281
            GP+                                                 RSSY   
Sbjct: 189 RGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSG 248

Query: 282 ---NKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFE 305
                   S +++Y GNL WG+   +L   F  Q  ++ A+VIYDR+SGRS+GFGFV+  
Sbjct: 249 SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLS 308

The following BLAST results are available for this feature:

BLAST of CmaCh14G003660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	6.3e-81	52.31	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	2.1e-76	50.00	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
Q08937	2.7e-39	37.33	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49314	3.0e-38	37.38	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q08935	6.6e-38	36.75	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of CmaCh14G003660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J651	2.1e-172	100.00	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481...	[more]
A0A6J1F948	7.3e-165	97.22	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A1S3B7N1	2.5e-141	83.33	33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 ...	[more]
A0A5D3DPZ1	3.3e-141	83.33	33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TK11	3.3e-141	83.33	33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of CmaCh14G003660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983024.1	4.4e-172	100.00	33 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima]	[more]
XP_022934919.1	1.5e-164	97.22	33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata] >XP_022934920.1 33 ...	[more]
KAG7017509.1	2.2e-163	96.91	hypothetical protein SDJN02_19374 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6580756.1	6.4e-163	96.92	hypothetical protein SDJN03_20758, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023527627.1	8.3e-163	96.04	33 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh14G003660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52380.1	1.5e-77	50.00	chloroplast RNA-binding protein 33	[more]
AT2G37220.1	3.1e-38	39.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	3.0e-33	31.33	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	3.0e-33	31.33	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	3.0e-33	31.33	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 121..194 e-value: 8.8E-28 score: 108.3 coord: 224..297 e-value: 4.6E-26 score: 102.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 122..192 e-value: 7.6E-20 score: 70.5 coord: 225..295 e-value: 2.0E-19 score: 69.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 223..301 score: 19.17783
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 120..198 score: 19.194885
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 205..309 e-value: 1.6E-25 score: 91.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 83..204 e-value: 2.8E-30 score: 107.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..116
None	No IPR available	PANTHER	PTHR48025:SF11	RNA-BINDING PROTEIN CP33, CHLOROPLASTIC	coord: 8..311
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 8..311
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 121..197 e-value: 2.14518E-32 score: 113.477
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 218..307
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 116..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G003660.1	CmaCh14G003660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding