CmaCh14G002780 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G002780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 1173615 .. 1176516 (-)
RNA-Seq ExpressionCmaCh14G002780
SyntenyCmaCh14G002780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTTCCCCTCCCTTCGATTTTCCACCTTTCCGGTGAGTACGTCTCTTTCAGAAATTCGACTGTCGGAGAGAGAAGCTGGGAACCATACAGAACTTTTATGCGCAGTGGCGTTTTCGTAATATTCTTTTGTCCAATAAATTCTTAATTAATTTATTTTGCCGAAGATCTGATATTAATTCGCAGTTGGCTCCATCACCCTTAAATTAGGCCCAATAAGATTATTCGTAACGACGGAAGTCATTTCCATTCCACGCGCCTGAAATTCCTTACGAGACTCCCGCGTGGGGTTTACACGTGCGCGTGGTTTTGATAGCTTCCGGATTAAAATAGGTTGTTGAACTACCATTTTACTCAATCGGTCTATGCCATTTGTTATGTGTTTTGTAATTTAAAAATTAGAAGTTTTGGTTAAAATTTCATTAAATCTTTATAAAGGGTGTTATATCTATTATATATCTATTAATAAACACAATAAATTATATATCTATTATGTCGGCCAAATAAACGACCTTTAAATATAAAAATAATCAATAAAAATAGTATCCATGTTGAGGATGGTTGGGAGTGAGTCCCACATTAGCTAATTTAGGGAATGATCACGGGTTTATAAAGAAAAAAATACATCTCCATTGGTTTGAAGCCTTTTGGCAAAGCGAGGAAAGGTGAGGAGAGCTTATACTCAAAGTGGATAATATCATACAATTATGGAGAGTCGTGATTCCTAACATGATATCCGAATCATGCCCTAAACTTAGTCATGTCAATAGAATTCTCAAATATCGAACAAGAATTGTGAGCCTCGAGGGTATAGTCAAAAATGACTAGAGTGTCAACCAAATGATACTTTGTTCGAGAGTTCTAAAAAATGAAGTCGAGCTTTGATTAAGAATAGACTATTCGAAAGCTTGATAAGCCTCAGGAAGTTCCACACCAAAGGGTCAAATGTTAAAATTCCATGTGAATTATAAAAAGAAAGGAAAAAAAATTCAGGTTGAAATTGAATTTCCCCCACGTACGTTTAAGTTAAAAAAAAAAAAAAAATCATGAAGAAAAGAAAAAGAAGATAAAAGAAAAGTAAAATCAATAGAACTAGGCGGGAAGGATAAAAAAAATTGGCGGCAAGAAGCAATAACAGCCAATTTTTTCCTGTTCTCTCTCACTCTCACTGCCTCTCTTTCCGCAATCTCACATCTTTGCCTCTTGACGCTTGCTCCTCAGTCCGATCTCCTTCCGCGACTCGATCTCTATCTGCGATTTCAATCGCACCATACATCCGCAACCAAGGTACGTTTCTTCATTTGAAAGAGTGGTCTCTAACAATGTTTTAACCGCTAGTTGAACTTGGTCAAATTTCAGTTTATCTGGCAATCGTATCCTGTTTCCTCCAATTCAATTTAGTTTCTCACATTATCTGTAATCTTTCTGATGTCGGGTCCATTGAAACGATTTTGCTCCGGTATAACAACTTAAGATTTTAGAATTAATGGTTGTTTAGGAAGTTGTGCAGGATTTGTTCATTACTATATAACTTGAATATTTGTATATTGTTTACTTTCGACGATTGGTAATCGTTTGAGCTCAATCTGTGTTTTGTCTTCAGATCGGTCTTCCTCTGTGGTCCGATAACATTTGCACGGCCACTTGGATCGTATTTTCGGAGTCAAGGTAGGCTTCATCATCTGAAATAGTAGTTTTAGAAGATGTTCAGGGTTATAGTGGATTTTTGGTCGGAGTTCCGTTTATCTGATGAGCGTATTCTGCTTCGTCAATTCAAATTCAATTTCTCCAATTTCTGTTGCGTGAAATTTGATGTCTGTGCCATTAAAATAAGATCGATAAGGCCTAACGGATTAAGATTTTTGAATTGATCGTTGTTTAAGAACTTGCGCAAGAGCTGTGCACTACTACATAACTCGACTACTTTTATTTTGTTTATTAGTTGATGGACAATAACCGTCTTAGCTCAATCTGCTCTCTCTTCAGTTCGATCTCCCGTTTCGCTTCAATTTCCATCAACGCTTTCACGTAGATCATACAATTGGAATCAAGGTACGCGTCTTCATCCAATGTAGTGGACTTATAACTTCGCTTCATGTTCTTGTTGAAATTGATCGGTGATCAATTTACCTGATAATCGTATCCTTACATCATTTTTTATTTCGATTGCTAAAAATTTGATATCTGTGCTATTAGGACGATTTTACTCCAGCCGAACTTAAGATTTTTGAACGAATGGTTATTTATGAAGTTGCGCAAGAATTTGTTCATTTCTATATCACTTACTATTTTTGTTTGCTTCTTTCTCAATAATTGGTAATTGATTGTGCTCAATCCAATTTTCGGGCATTCGAAATTCACGAGATATAATCTTCAAACGGAGTTAGTAGTGGATAAGATTACATGGCATATTGAAGTGTGAGTCCCGATTGGTTTTTCATTTGTTCTTCTTCGAGTAAACGGATGAGATTACATGGCATATAATTGGACATTGGTAGAAACCTAGAATACAACCATTACTGGATTGTCACGCGCACCTGTAGATGAGCGCTACTTTCATGGTCCGAGTAAGGTATTCTAAATAAATTTCTCTGTAAAGACTTCCACGTCTTCTATTTAAAAATGATGTGAATGGTTTGAGTAATTCTTTCATGAAAATTATCGGGCTCATAGGTTGAAAGTCTGACGTGCTGTAATCTCTATTGAACCTGGAATCTCACATCCGGATAGAGAAATTAATAAATACACCTTGGCTTTGTGTCGGTCGCTAGTTTTATATGAATGATTCGGACTTGAGCTTGAAATGACTAATTCTAATCTTGTTAATCACGTGTCATACAGGAATTTACAAGTGGATACTAACTTATTTGTGATGGTTGGAAGCTGTGTTACTAAATGA

mRNA sequence

ATGAAGATTTCCCCTCCCTTCGATTTTCCACCTTTCCGTCCGATCTCCTTCCGCGACTCGATCTCTATCTGCGATTTCAATCGCACCATACATCCGCAACCAAGATCGGTCTTCCTCTGTGGTCCGATAACATTTGCACGGCCACTTGGATCGTATTTTCGGAGTCAAGTTCGATCTCCCGTTTCGCTTCAATTTCCATCAACGCTTTCACGTAGATCATACAATTGGAATCAAGGTACGCGTCTTCATCCAATGAATTTACAAGTGGATACTAACTTATTTGTGATGGTTGGAAGCTGTGTTACTAAATGA

Coding sequence (CDS)

ATGAAGATTTCCCCTCCCTTCGATTTTCCACCTTTCCGTCCGATCTCCTTCCGCGACTCGATCTCTATCTGCGATTTCAATCGCACCATACATCCGCAACCAAGATCGGTCTTCCTCTGTGGTCCGATAACATTTGCACGGCCACTTGGATCGTATTTTCGGAGTCAAGTTCGATCTCCCGTTTCGCTTCAATTTCCATCAACGCTTTCACGTAGATCATACAATTGGAATCAAGGTACGCGTCTTCATCCAATGAATTTACAAGTGGATACTAACTTATTTGTGATGGTTGGAAGCTGTGTTACTAAATGA

Protein sequence

MKISPPFDFPPFRPISFRDSISICDFNRTIHPQPRSVFLCGPITFARPLGSYFRSQVRSPVSLQFPSTLSRRSYNWNQGTRLHPMNLQVDTNLFVMVGSCVTK
Homology
[Close]
BLAST of CmaCh14G002780 vs. NCBI nr
Match: KAG7017421.1 (hypothetical protein SDJN02_19286, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.4 bits (355), Expect = 4.5e-30
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 18 RDSISICDFNRTIHPQPRSVFLCGPITFARPLGSYFRSQVRSPVSLQFPSTLSRRSYNWN 77
          RDSISICDFNRTIHPQPRSVFLC PITFARPLGSYFRSQVRSPV+LQFPSTLSR SYNWN
Sbjct: 18 RDSISICDFNRTIHPQPRSVFLCDPITFARPLGSYFRSQVRSPVALQFPSTLSRGSYNWN 77

Query: 78 QGTRLHPM 86
          QGTRLHPM
Sbjct: 78 QGTRLHPM 85

[Close]
BLAST of CmaCh14G002780 vs. NCBI nr
Match: KAG6580666.1 (hypothetical protein SDJN03_20668, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-25
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 18 RDSISICDFNRTIHPQPRSVFLCGPITFARPLGSYFRSQVRSPVSLQFPSTLSRRSYNWN 77
          RDSISICDFNRTIHPQPRSVFLC PITFARPLGSYFRSQVRSPV+LQFPSTLSR SYNWN
Sbjct: 11 RDSISICDFNRTIHPQPRSVFLCDPITFARPLGSYFRSQVRSPVALQFPSTLSRGSYNWN 70

Query: 78 Q 79
          Q
Sbjct: 71 Q 71

The following BLAST results are available for this feature:
BLAST of CmaCh14G002780 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G002780 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G002780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017421.14.5e-3095.59hypothetical protein SDJN02_19286, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6580666.12.6e-2595.08hypothetical protein SDJN03_20668, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh14G002780 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G002780.1CmaCh14G002780.1mRNA