CmaCh14G001660 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G001660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 671385 .. 671618 (-)
RNA-Seq ExpressionCmaCh14G001660
SyntenyCmaCh14G001660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCAGCGACAGGGCAAGCACCAGAGGAGGCCTTCGCAGAGCGTTTTTATTGCGGCGGATTACCTCTCCGAGCCGCCACGGGCAACCGGACCGGGATCTGCCGTTGAACATGCAGGTCCACACTCGACTCACCTTCCTCGCCCACCGCAGCAGAGTCGCAACGCTGATCCAGCGGCGCCAAGGCCTCCTGCTCCGGCGGCGTCGAATGAAGCTCCAAATCCGACAAACTAG

mRNA sequence

ATGTCGCAGCGACAGGGCAAGCACCAGAGGAGGCCTTCGCAGAGCGTTTTTATTGCGGCGGATTACCTCTCCGAGCCGCCACGGGCAACCGGACCGGGATCTGCCGTTGAACATGCAGGTCCACACTCGACTCACCTTCCTCGCCCACCGCAGCAGAGTCGCAACGCTGATCCAGCGGCGCCAAGGCCTCCTGCTCCGGCGGCGTCGAATGAAGCTCCAAATCCGACAAACTAG

Coding sequence (CDS)

ATGTCGCAGCGACAGGGCAAGCACCAGAGGAGGCCTTCGCAGAGCGTTTTTATTGCGGCGGATTACCTCTCCGAGCCGCCACGGGCAACCGGACCGGGATCTGCCGTTGAACATGCAGGTCCACACTCGACTCACCTTCCTCGCCCACCGCAGCAGAGTCGCAACGCTGATCCAGCGGCGCCAAGGCCTCCTGCTCCGGCGGCGTCGAATGAAGCTCCAAATCCGACAAACTAG

Protein sequence

MSQRQGKHQRRPSQSVFIAADYLSEPPRATGPGSAVEHAGPHSTHLPRPPQQSRNADPAAPRPPAPAASNEAPNPTN
Homology
BLAST of CmaCh14G001660 vs. ExPASy TrEMBL
Match: A0A5A7TPQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001830 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.8e-20
Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = 0

Query: 1  MSQRQGKHQRRPSQSVFIAADYLSE--PPRATGPGSAVEHAGPHSTHLPRPPQQSRNADP 60
          MSQR G+HQRRPSQ VF+AADYLSE  PP   GPGS VE  GPHS  L RPPQQSRNADP
Sbjct: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPPVIGPGSTVESGGPHSALLTRPPQQSRNADP 60

Query: 61 AAPRPPAPAASNEAPNPTN 78
           APRPPAPAA+N+A NP +
Sbjct: 61 VAPRPPAPAAANDAQNPAS 79

BLAST of CmaCh14G001660 vs. ExPASy TrEMBL
Match: A0A0A0LAM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734895 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 0

Query: 1  MSQRQGKHQRRPSQSVFIAADYLSEPPRATGPGSAVEHAGPH-STHLPRPPQQSRNADPA 60
          MSQR  +HQRRPSQ VF+ ADYLS+PP   GPGS VE  GPH ST L RP QQSR+ADP 
Sbjct: 1  MSQRPSRHQRRPSQGVFMPADYLSDPPPPVGPGSTVESGGPHSSTLLTRPTQQSRSADPV 60

Query: 61 APRPPAP--AASNEAPNPTN 78
          A RPPAP   A+N+APNP +
Sbjct: 61 AARPPAPPAVANNDAPNPAS 80

BLAST of CmaCh14G001660 vs. NCBI nr
Match: KAG6580559.1 (hypothetical protein SDJN03_20561, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.5 bits (371), Expect = 4.7e-32
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0

Query: 1  MSQRQGKHQRRPSQSVFIAADYLSEPPRATGPGSAVEHAGPHSTHLPRPPQQSRNADPAA 60
          MSQRQG+HQRRPSQSVFIAADYLSEPPRATGPGSAVEHAGPHS HLPRPPQQSRNADPAA
Sbjct: 1  MSQRQGRHQRRPSQSVFIAADYLSEPPRATGPGSAVEHAGPHSAHLPRPPQQSRNADPAA 60

Query: 61 PRPPAPAASNEAPNPTN 78
          PRPPAPAASNEAPNPTN
Sbjct: 61 PRPPAPAASNEAPNPTN 77

BLAST of CmaCh14G001660 vs. NCBI nr
Match: KAA0044076.1 (hypothetical protein E6C27_scaffold236G004240 [Cucumis melo var. makuwa] >TYK25061.1 hypothetical protein E5676_scaffold352G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = 0

Query: 1  MSQRQGKHQRRPSQSVFIAADYLSE--PPRATGPGSAVEHAGPHSTHLPRPPQQSRNADP 60
          MSQR G+HQRRPSQ VF+AADYLSE  PP   GPGS VE  GPHS  L RPPQQSRNADP
Sbjct: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPPVIGPGSTVESGGPHSALLTRPPQQSRNADP 60

Query: 61 AAPRPPAPAASNEAPNPTN 78
           APRPPAPAA+N+A NP +
Sbjct: 61 VAPRPPAPAAANDAQNPAS 79

BLAST of CmaCh14G001660 vs. NCBI nr
Match: KAG6596419.1 (hypothetical protein SDJN03_09599, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 9.5e-17
Identity = 53/77 (68.83%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 1  MSQRQGKHQRRPSQSVFIAADYLSEPPRATGPGSAVEHAGPHSTHLPRPPQQSRNADPAA 60
          MSQR G+HQRRPSQ VF+ ADYLSEPP  TGP   VE   P S+ L RPP QSR ADP A
Sbjct: 1  MSQRSGRHQRRPSQGVFMTADYLSEPPPPTGPPLPVESVDPQSSFLSRPPPQSRYADPPA 60

Query: 61 PRPPAPAASNEAPNPTN 78
           RPPAPA SNEAPNP +
Sbjct: 61 ARPPAPAVSNEAPNPAS 77

BLAST of CmaCh14G001660 vs. NCBI nr
Match: KGN58888.1 (hypothetical protein Csa_002334 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 3.1e-15
Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 0

Query: 1  MSQRQGKHQRRPSQSVFIAADYLSEPPRATGPGSAVEHAGPH-STHLPRPPQQSRNADPA 60
          MSQR  +HQRRPSQ VF+ ADYLS+PP   GPGS VE  GPH ST L RP QQSR+ADP 
Sbjct: 1  MSQRPSRHQRRPSQGVFMPADYLSDPPPPVGPGSTVESGGPHSSTLLTRPTQQSRSADPV 60

Query: 61 APRPPAP--AASNEAPNPTN 78
          A RPPAP   A+N+APNP +
Sbjct: 61 AARPPAPPAVANNDAPNPAS 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TPQ15.8e-2073.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LAM01.5e-1566.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734895 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6580559.14.7e-3297.40hypothetical protein SDJN03_20561, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0044076.11.2e-1973.42hypothetical protein E6C27_scaffold236G004240 [Cucumis melo var. makuwa] >TYK250... [more]
KAG6596419.19.5e-1768.83hypothetical protein SDJN03_09599, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN58888.13.1e-1566.25hypothetical protein Csa_002334 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G001660.1CmaCh14G001660.1mRNA