CmaCh14G000970 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G000970
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 426628 .. 429842 (-)
RNA-Seq ExpressionCmaCh14G000970
SyntenyCmaCh14G000970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTATCGGCTCAGAAGCTCGAAGTCTGTCTGAGGTCAGAAAGTTATTGTGAAATTATGTGATTGAGTTCTGTGATATCGTATATGCCTTCTTCCACTGATGGCTATTTATTTTGGATTCACTAGAAGCACCTTTTTTAGTTTTGGCCACTCACTTAATCGATGTCTGGAATGTACTTATAGCTTGATTCACTTTCAATATGAGGCAAATACACGCTACGTTTTGCTTGTAACTGAAGATTAGGAACCGTGTCAATTCGATTGGGCATAAAGTGCAGAAGAAATTTGCATAAAGGAGATGGATAAATAATTGAAAAGAAAGAAGGTTTATTAGAAAATTAGAAAGATAGACACTTTTGAAAGAGAAGGCTCTCACACACTCTCTAATCCTCTATTACTTGTTTTTTAAGCGACGCTGTATATTACGTATACCGTGGGAAATTATGTTATCAGACGTTTAAGGTTTTTGCTTCCTACACAAATTAGTTTGTCACGATGAACAATAGGTTGATGCTTTATTATAAGATCAAAGGATTAAGTGAAGATATGGTCCGGGAGTTCAGGCATGCAGGCAGGAGTAAGCTGTAAAATTTCAGGTGAAGGTCAGAAAATAATGCATGGTTGGAAGGGAGTCCGAGGTTGGCTGAATAAGGGAATGATTATGTGTTTATAAGTAAGGAATATTATCTCCAAGTATGAGATCTTTTAGGGAAATAAAAAACAAAGCCATGAATAAACTTTGTTAAAGTAGACAATATCATACTATTGTGGAGGTTTGTGATTCCTAACATGATATAAGAGTCATGCCCTTAACTTAGTCATGTCAATAGAATCCTCAAATATCGAACAAATAAATTGGGACCCTCGAAGATGTAGTCAAAAGTGACTCAAAGTGTCGAACATAGGGTGTACTATATTCCAGGACTCTAGAGAAAGAAGTCGAACCTTAATTAAGAGGAGGCGGTTCGAGGGCTCCATAGACCTCAGGGGAGTCTCTATGGTGTACTTTGTTTGAGGGGAGAATTGTTGAAGATTGAAAATGATCTTGAGTTTATAAGTATGGAATACTATCTCCATTGATATGAGATCTTTTAGGAAAATTAAAAGCAAAGCGATGAGAGTTTATGTTTAAAGTGGATAATATTACACTATTGTGGAAATTCGTGATTCCTAACTATTACTTTCATGTTACTCTTAGGCACGGGGAGAAGAATAAGGTTATGGGTTTTGTGTTGTTCTCAAAGTAGTATTGCAGTTACCTATTGAGAATTATTAAGAGGAATAGTCACATTGGTTAATTAAGATGAAGATCATGAGTTTATAAGTAAAGAACACTCTCTATTGGTATGAAGTCTTTTGGGGAAACCACAAGTAAATTCATGAGAACTTATGCTCAAAGTGGACAATATCATACTCTTATGGAGAGTCGTAGTTCTAAACATGGTATCATAACCTTAGACATGCCAATAGAATCCTCAAGTGTCGAAAAAAATAAGTTGTGAGCCTCAAAGGTGTAGTCAAAGGTGACTCAAGTGTCAAACTGAGGAAGTACTTTGTTTGAGGCTTCTAGAGATGGAGTGTCGATCCTTGATTAAGGGGAGGCTATTTAGGAGTTCTAAAGAAGAAAGGTCTCAAGGGAGACTTTATGATGTATTTTGTTCTAGGGGAGAATTGTTGAGAATTATTAAGAGGAGTAATCTCACACTGGATAATTGAGAGGAAGATCATGAATTTATAAATTAGGAACATTATCTCTTGGTATGAGGCTTTTTGGGAAACCAAAAGCAAACCGTGAGCACTTATGCTCAAAGTAGACAATATCATTTCATTGGGGAGAGTCGTGGTTTCTAACCTCACCTTCTTACTTTCTTCCTTGGAGTTGTCAGTGTGATAAAGTATTGCTTGTGGCTAAAGTATGAATGTCCTGTTTGCAGGTTGCAGGTGTAGAAATAAAAGGTTAAACCTTGTTGATGCTGGAAGGATTTTCTGGAGCTTTAAGCATGGATATCTCCCTCTCTAACCGCATCTCCACACTGCTATTAATCTAAATCCGGTGTGCTACCTTTATTTTCCTTGGTTATCTTTTGAGCCTGCAATTGGTGTTCCTTGCATGCCTTTCCTTTTAATATCACAAAAACCTTAACAAACCCAAGCCAGTTGCATGAGCCTGCCACTGTGTATAAGGTTTTCATGGACCTACATAAAAAAGAAAAAAGTATACGATCATCTAGCCAGGTCTCGAAAGACTAAAATGTAACCAATTTGAACTAGATTATATGTATACTTCGCTTGTGACCTTAGAATCTGAGTGTGAAGAATATGGCATTACCCTGATTCCACCAATTGATTTCATATGTGAAGAGGCTCCAAATTCCTATGAAGTCAAGACCAGCCGCGCTTATTTGTATGGTATATCGAAAGAATTCGCAAATGGATATATATCTCCAAATCCGTCGACCACAAAAATGCAGTAAATGGATGGGGAAAGGTTAGTAGTCTCTTCAATCAATTTTTGTTCACATGTAAATGTATTCATCTGTCTTATTTTCTAGATTTGTGACATTAAAAAGGGTGGTTTCTGTTAGCCAAAGAACTTTATTTCAATACCTAAATATTTTCCCTGGGTGTTTTGAGTGTTGCTGGCCGTGCTTTACCGTCTCGAATAAGGTCCCGTGAGTGGGGACTTCAGTTCTTAGTTGCAAAATGAGATAACAAATTATGGTTATAGAATGAGTTACTGTAAATTTAATTTTCAACTAGTTCAAGTCATTAGTTGATGATTGTGTGAGCAGGTGAAGGAATAGCTGTTCCATCCGGCACCATTTGGGTCGAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGATATGGGACTACGGTTGGTGCAATCAAGGCGACGAACTTCAAAGGTACGAGATATTTGATTCAATCAAGTCTAGTATTCTCATTAACTCATGTGTTAAAGTGATAGGTGTTTAGGATGATGATAGGTGTTTAGGATGGTTGGAAATTAGTCTCAGATTAGCTAATTTAACATGAAGCCTTTAGAAGAAACCAAAACTAAAGCCTTTGAAAGCTTAGGCTCAAAATGTACATTATGTTAAGCAATAGGAATTATCAAAAACAAAATAGCCTGTGATAGGAACTTCATTATGATAATATTTTCAACAGAGAAACTTGCAGAATAACAAATTATACGAGCATATGTAACTGA

mRNA sequence

TTTTATCGGCTCAGAAGCTCGAAGTCTGTCTGAGGTTGCAGGTGTAGAAATAAAAGGTTAAACCTTGTTGATGCTGGAAGGATTTTCTGGAGCTTTAAGCATGGATATCTCCCTCTCTAACCGCATCTCCACACTGCTATTAATCTAAATCCGAGGCTCCAAATTCCTATGAAGTCAAGACCAGCCGCGCTTATTTGTATGGTATATCGAAAGAATTCGCAAATGGATATATATCTCCAAATCCGTCGACCACAAAAATGCAGTAAATGGATGGGGAAAGGTGAAGGAATAGCTGTTCCATCCGGCACCATTTGGGTCGAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGATATGGGACTACGGTTGGTGCAATCAAGGCGACGAACTTCAAAGGAACTTCATTATGATAATATTTTCAACAGAGAAACTTGCAGAATAACAAATTATACGAGCATATGTAACTGA

Coding sequence (CDS)

ATGAAGTCAAGACCAGCCGCGCTTATTTGTATGGTATATCGAAAGAATTCGCAAATGGATATATATCTCCAAATCCGTCGACCACAAAAATGCAGTAAATGGATGGGGAAAGGTGAAGGAATAGCTGTTCCATCCGGCACCATTTGGGTCGAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGATATGGGACTACGGTTGGTGCAATCAAGGCGACGAACTTCAAAGGAACTTCATTATGATAATATTTTCAACAGAGAAACTTGCAGAATAACAAATTATACGAGCATATGTAACTGA

Protein sequence

MKSRPAALICMVYRKNSQMDIYLQIRRPQKCSKWMGKGEGIAVPSGTIWVEPQKSILHLMRKDMGLRLVQSRRRTSKELHYDNIFNRETCRITNYTSICN
Homology
[Close]
BLAST of CmaCh14G000970 vs. NCBI nr
Match: KAG6580501.1 (hypothetical protein SDJN03_20503, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 8.0e-08
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 38  GEGIAVPSGTIWVEPQKSILHLMRKDMGLRLVQSRRRTSKELHYDNIFNRETCRIT 94
           GE IAVPS TIWV+PQKSILHLMRK+MGLRLVQSRR    E+   N+ +    +I+
Sbjct: 64  GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKIS 119

[Close]
BLAST of CmaCh14G000970 vs. NCBI nr
Match: KAG7017252.1 (hypothetical protein SDJN02_19115, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 38 GEGIAVPSGTIWVEPQKSILHLMRKDMGLRLVQSRR 74
          GE IAVPS TIWV+PQKSILHLMRK+MGLRLVQSRR
Sbjct: 45 GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRR 80

The following BLAST results are available for this feature:
BLAST of CmaCh14G000970 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G000970 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G000970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6580501.18.0e-0862.50hypothetical protein SDJN03_20503, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7017252.11.8e-0788.89hypothetical protein SDJN02_19115, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh14G000970 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G000970.1CmaCh14G000970.1mRNA