CmaCh14G000780 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G000780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 370024 .. 370896 (+)
RNA-Seq ExpressionCmaCh14G000780
SyntenyCmaCh14G000780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGATAACCACAACAAAGTGGCTTTGGATGGACCGGTAATTTTTAGAAACAGCATTCATTTCTCCCCCCCTCCCCTTCTCTCTTTCTCTCGTTTAATGTGATGATTACTCTGTCCTCATTATGTAATTTTATTTTGCTGTGGATCTTGATTTTGATTCTTTTAGTTTGAAAATATAATGATTATGGAGATGTATTATGATTAGCACGAGATTATCCCGCACGAGTACTACTCACCCTTCATTATTTTCATGGACATGAACCCCACCCCCATGCATACCTCAAACTAAAACAAATAAAGAATATCATTTCGAGCATACCATTAAGCATTGCACTGCATGTGGGTCTGCATGTTCCTATGTTTCTCCTTTGCAATTGTTTGGACAAACTGGGGTTTTACAGGTGGGCCCCCTGATTGAGAATTGACCAACCATGCTTGCTAATTGAGAATCTTTCAGCTCTTCAAAGGCGTGGCCCTACAAATTCACAGGTCTAACTCATCCCTGTCTAACTGTTGGCTTCTAAAAATTTATGGCCCAAACATATCACGCAGAGAGATTCGTGCTGTCTAGGCCATTCACTCCTTGAGGAGATGCCATTATTTAGGCCGTCAACGGTGGTTGTTCCATCCAGTTCCTTCCTTTATGGACAATACTGAACAAGAACAACTCAGCCAAGTAAACTTTTATGCATATTAATTTACCTGATCAAGCGATATTTTGTTGATATCCAATTTATGTAATTTTTTAATGAACAGATCTCTGGTGTTCACGCATTTAGACAAGAAAATTTCAGAGCTTCGAAGGCAGAAACTCTATTATCATCTGCTAAAGCATCATCTTACAGAGACGGGCACGCAAAAGAATGTCTAA

mRNA sequence

ATGTTAGATAACCACAACAAAGTGGCTTTGGATGGACCGGCCGTCAACGGTGGTTGTTCCATCCAGTTCCTTCCTTTATGGACAATACTGAACAAGAACAACTCAGCCAAATCTCTGGTGTTCACGCATTTAGACAAGAAAATTTCAGAGCTTCGAAGGCAGAAACTCTATTATCATCTGCTAAAGCATCATCTTACAGAGACGGGCACGCAAAAGAATGTCTAA

Coding sequence (CDS)

ATGTTAGATAACCACAACAAAGTGGCTTTGGATGGACCGGCCGTCAACGGTGGTTGTTCCATCCAGTTCCTTCCTTTATGGACAATACTGAACAAGAACAACTCAGCCAAATCTCTGGTGTTCACGCATTTAGACAAGAAAATTTCAGAGCTTCGAAGGCAGAAACTCTATTATCATCTGCTAAAGCATCATCTTACAGAGACGGGCACGCAAAAGAATGTCTAA

Protein sequence

MLDNHNKVALDGPAVNGGCSIQFLPLWTILNKNNSAKSLVFTHLDKKISELRRQKLYYHLLKHHLTETGTQKNV
Homology
[Close]
BLAST of CmaCh14G000780 vs. NCBI nr
Match: KAG6596355.1 (putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 43  HLDKKISELRRQKLYYHLLKHHLTETGTQKNV 75
           HLDKK  ELRR KL YHLL+HHLTETGTQKNV
Sbjct: 118 HLDKKGFELRRLKLDYHLLQHHLTETGTQKNV 149

The following BLAST results are available for this feature:
BLAST of CmaCh14G000780 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G000780 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G000780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6596355.14.0e-0484.38putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase, partial [Cucu... [more]
BLAST of CmaCh14G000780 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G000780.1CmaCh14G000780.1mRNA