CmaCh13G011480 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G011480
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Sensory transduction histidine kinase
Location	Cma_Chr13: 8436509 .. 8437208 (-)
RNA-Seq Expression	CmaCh13G011480
Synteny	CmaCh13G011480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTTTCTGCCAGTCCAAGCTGCCATCATAAAACAGATAGACGGTAGGGTGAGATGAAATTGAATATTTTCGTACAAGAAAAGGAAGGGTCTGCAAACACCAGGCGTTGACCAGCTAGATACTAGGGAAGTAATAAATTACAATGATATACATCATCTGCCGATCCAATTCCCTAGACACTTCGATTGCATGTCTATTTGCAACTGATGCACAACCAAATTCTATTTGAGAAAATTACTACAAATGCTTGAAAATAGAGGCAAACCATGCGTCTTCTTCTCCACATATGCGTCCACAAGTTTAATAGCTCATTTGTCCGTAAAGGCTTTACAAGATAGTCGGCTGCTCCAAGCCTCAAGCACTTAACGACAATAGGGACTTCATCTTGTGTTGACATCACTTACAAAGAAGGCCAAAAAAAAAAAACCAGAGAAGAATCAGATCATTCTATTAATTTAGAAATATTAACAGTGTGATAAATCGGCAGTTAACCAGAACTTACTGATAACAGGAATGCGCCGGAGCTCTTTATCCCGGGTGATATACTTCAACATTTTCATACCTTTGGCCATTGGCAGGTCAACTTCTGAGAGTATAATATCAATTTCAGGTCCCTCCGCATTCAAAGCATCGATGACCTGTCTAGCTGAGCTCACGGAAATGACTGCCAACAAAAAGAACACCTTATATCAGTGA

mRNA sequence

ATGTTTTTTTCTGCCAGTCCAAGCTGCCATCATAAAACAGATAGACGGAAGGGTCTGCAAACACCAGGCGTTGACCAGCTAGATACTAGGGAATGTGATAAATCGGCAGTTAACCAGAACTTACTGATAACAGGAATGCGCCGGAGCTCTTTATCCCGGGTGATATACTTCAACATTTTCATACCTTTGGCCATTGGCAGGTCAACTTCTGAGAGTATAATATCAATTTCAGGTCCCTCCGCATTCAAAGCATCGATGACCTGTCTAGCTGAGCTCACGGAAATGACTGCCAACAAAAAGAACACCTTATATCAGTGA

Coding sequence (CDS)

ATGTTTTTTTCTGCCAGTCCAAGCTGCCATCATAAAACAGATAGACGGAAGGGTCTGCAAACACCAGGCGTTGACCAGCTAGATACTAGGGAATGTGATAAATCGGCAGTTAACCAGAACTTACTGATAACAGGAATGCGCCGGAGCTCTTTATCCCGGGTGATATACTTCAACATTTTCATACCTTTGGCCATTGGCAGGTCAACTTCTGAGAGTATAATATCAATTTCAGGTCCCTCCGCATTCAAAGCATCGATGACCTGTCTAGCTGAGCTCACGGAAATGACTGCCAACAAAAAGAACACCTTATATCAGTGA

Protein sequence

MFFSASPSCHHKTDRRKGLQTPGVDQLDTRECDKSAVNQNLLITGMRRSSLSRVIYFNIFIPLAIGRSTSESIISISGPSAFKASMTCLAELTEMTANKKNTLYQ

Homology

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BLAST of CmaCh13G011480 vs. ExPASy TrEMBL
Match: A0A2P2L7E1 (Sensory transduction histidine kinase OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 42 LITGMRRSSLSRVIYFNIFIPLAIGRSTSESIISISGPSAFKASMTCLAELTEMT 97
          +ITGM  +SLS V+YFNIFIP  IGRSTS S++SISGPS    S+TCLA+LT++T
Sbjct: 1  MITGMWCNSLSCVMYFNIFIPFFIGRSTSVSMMSISGPSELSTSITCLADLTDIT 55

The following BLAST results are available for this feature:

BLAST of CmaCh13G011480 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G011480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2L7E1	1.4e-08	65.45	Sensory transduction histidine kinase OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of CmaCh13G011480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmaCh13G011480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G011480.1	CmaCh13G011480.1	mRNA