CmaCh13G011250 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G011250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr13: 8366115 .. 8366524 (+)
RNA-Seq ExpressionCmaCh13G011250
SyntenyCmaCh13G011250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTCTTCGACTGATTGAATTGGACGAACATGAGCAAAAGATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTAGATGAATGGTTTGTTGTCCAAACAAGGCAGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGTAAAGATGAACAGTAATATGTTTTGTTATTATCCAATAATTTGATTTGCTGTAAGGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCGATGGGATCCACCATAGCAGTGAGATGGATGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA

mRNA sequence

ATGGATGGTCTTCGACTGATTGAATTGGACGAACATGAGCAAAAGATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTAGATGAATGGTTTGTTGTCCAAACAAGGCAGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCGATGGGATCCACCATAGCAGTGAGATGGATGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA

Coding sequence (CDS)

ATGGATGGTCTTCGACTGATTGAATTGGACGAACATGAGCAAAAGATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTAGATGAATGGTTTGTTGTCCAAACAAGGCAGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCGATGGGATCCACCATAGCAGTGAGATGGATGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA

Protein sequence

MDGLRLIELDEHEQKMARDEVSFNVGWRELLDEWFVVQTRQQWINLVMPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTDGIHHSSEMDAEFNAANPTCSTLYFPLYHHIIT
Homology
[Close]
BLAST of CmaCh13G011250 vs. ExPASy TrEMBL
Match: A0A0A0LTA5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.2e-20
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 48  MPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTDGIHHSSEMDAEFNAANPTCSTL 107
           MPAICFDHIAFQ   CLL      QPSFCGV+ KEKT+GIHHSS+M AEFNAANPTCS+L
Sbjct: 1   MPAICFDHIAFQ---CLL----DFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSL 60

Query: 108 YFPLYHHIIT 118
           YF LYHH+IT
Sbjct: 61  YFSLYHHLIT 63

[Close]
BLAST of CmaCh13G011250 vs. NCBI nr
Match: KGN63987.1 (hypothetical protein Csa_014108 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 48  MPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTDGIHHSSEMDAEFNAANPTCSTL 107
           MPAICFDHIAFQ   CLL      QPSFCGV+ KEKT+GIHHSS+M AEFNAANPTCS+L
Sbjct: 1   MPAICFDHIAFQ---CLL----DFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSL 60

Query: 108 YFPLYHHIIT 118
           YF LYHH+IT
Sbjct: 61  YFSLYHHLIT 63

[Close]
BLAST of CmaCh13G011250 vs. NCBI nr
Match: KAG6584453.1 (hypothetical protein SDJN03_20385, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-16
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 66  MDLPKSQPSFCGVQEKEKTDGIHHSSEMDAEFNAANPTCSTLYFPL 112
           MDLPKSQPSFCGVQEKEKT+GIHHSSEM AEFNAANPTCSTLYFPL
Sbjct: 1   MDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTLYFPL 46

The following BLAST results are available for this feature:
BLAST of CmaCh13G011250 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G011250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTA55.2e-2075.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1[more]
BLAST of CmaCh13G011250 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63987.11.1e-1975.71hypothetical protein Csa_014108 [Cucumis sativus][more]
KAG6584453.11.9e-1695.65hypothetical protein SDJN03_20385, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh13G011250 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G011250.1CmaCh13G011250.1mRNA