CmaCh13G011190 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G011190
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor PRE5-like
Location	Cma_Chr13: 8348664 .. 8349276 (+)
RNA-Seq Expression	CmaCh13G011190
Synteny	CmaCh13G011190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTTCTCGAACACACCCTCCCCTTTTTAAGCCTCACTCTTTCCCTCCCTTCTTCCACCCCTTTCTTTTCTTGCTTCACTCATGGCTTCCTCCACATTACGCGACGACCAACTTCGAAATCTTCTCTTCAAGTTGCAAACCTTGCTCCCTCAACTCAACCCTACGCTCCACACCTCCTCAACCGTATATACGTCCACTCTTTTCTTAATTATGATATAGGCGATTTTATTGAGTTTAGCCGTGGTTTAACATACTACAAATGTTTGCAGGTATCATCAGCAGAGATTTTAAAGGAGACGTGTGATTACATAAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAGGCAGCTCGATAACATGGGTGTTGACTTTGAAATGGTTAAACATTTTCTCAATTGAGAATGTTTAGTTAATAATGTTTCAAGTTCTGTTGTTCTTCTCCCTCATTATGTTGGAACTATGAAACTGAGTTTGATGTTTGCATTACCAACCGCCGCCGAGAGAGAAAAGTGGTCGATTCTATGTTCTATCCACATATTTCTATTTCTAGTTTTATGTGCTTTTTCTATATAATAGTGGAGGTGTATCTATTGTAGGC

mRNA sequence

CAACTTCTCGAACACACCCTCCCCTTTTTAAGCCTCACTCTTTCCCTCCCTTCTTCCACCCCTTTCTTTTCTTGCTTCACTCATGGCTTCCTCCACATTACGCGACGACCAACTTCGAAATCTTCTCTTCAAGTTGCAAACCTTGCTCCCTCAACTCAACCCTACGCTCCACACCTCCTCAACCGTATCATCAGCAGAGATTTTAAAGGAGACGTGTGATTACATAAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAGGCAGCTCGATAACATGGGTGTTGACTTTGAAATGGTTAAACATTTTCTCAATTGAGAATGTTTAGTTAATAATGTTTCAAGTTCTGTTGTTCTTCTCCCTCATTATGTTGGAACTATGAAACTGAGTTTGATGTTTGCATTACCAACCGCCGCCGAGAGAGAAAAGTGGTCGATTCTATGTTCTATCCACATATTTCTATTTCTAGTTTTATGTGCTTTTTCTATATAATAGTGGAGGTGTATCTATTGTAGGC

Coding sequence (CDS)

ATGGCTTCCTCCACATTACGCGACGACCAACTTCGAAATCTTCTCTTCAAGTTGCAAACCTTGCTCCCTCAACTCAACCCTACGCTCCACACCTCCTCAACCGTATCATCAGCAGAGATTTTAAAGGAGACGTGTGATTACATAAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAGGCAGCTCGATAACATGGGTGTTGACTTTGAAATGGTTAAACATTTTCTCAATTGA

Protein sequence

MASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSERLWRQLDNMGVDFEMVKHFLN

Homology

[Close]

BLAST of CmaCh13G011190 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-09
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 3  SSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSERL 62
          +S + +DQ+ +L+ KLQ LLP+L  +   S  VS+A +L++TC+YI+ L REVDDLSERL
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDS-RRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 73

Query: 63 WRQLDN 69
             L N
Sbjct: 74 SELLAN 78

[Close]

BLAST of CmaCh13G011190 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.7e-09
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 3  SSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSERL 62
          SS + DDQ+ +L+ KLQ L+P+L      S  VS++++L+ETC+YI+ L REVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELR--RRRSDKVSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WRQL---DNMGVDFEMVKHFLN 82
             L   D+   +  +++  LN
Sbjct: 74 SELLASTDDNSAEAAIIRSLLN 93

[Close]

BLAST of CmaCh13G011190 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-08
Identity = 31/70 (44.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 3  SSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSERL 62
          +S + DDQ+ +L+ KL+  LP+++     S  VS++++L+ETC+YI+KL REVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHER-RRSDKVSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WRQLDNMGVD 73
           + LD++  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of CmaCh13G011190 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-08
Identity = 28/68 (41.18%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 2  ASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSER 61
          +SS + DDQ+ +L+ KL+  +P++      S+TVS++++L+ETC+YI+ L +E DDLS+R
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDR 71

Query: 62 LWRQLDNM 70
          L + L+++
Sbjct: 72 LTQLLESI 78

[Close]

BLAST of CmaCh13G011190 vs. ExPASy Swiss-Prot
Match: A2Z730 (Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.2e-08
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 2  ASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSER 61
          +++ + D+Q+ +L+ KLQ LLP+    L ++  V SA +L+ETC YI+ L REVDDLSER
Sbjct: 11 SAARITDEQIGDLVSKLQALLPEAR--LRSNDRVPSARVLQETCSYIRSLHREVDDLSER 69

Query: 62 L 63
          L
Sbjct: 71 L 69

[Close]

BLAST of CmaCh13G011190 vs. ExPASy TrEMBL
Match: A0A0A0LQ05 (DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.8e-25
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSE 60
          MASS L DD+L+NL+ KLQTLLPQLN   H SS VS+ EILKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWRQLDNMGVDFEMVKHFLN 82
          RLW+QLD+MG+DFEMVK  L+
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLS 81

[Close]

BLAST of CmaCh13G011190 vs. ExPASy TrEMBL
Match: A0A5A7SZP9 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00610 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.8e-22
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSE 60
          MASS L D++L+NL+ KL+TLLPQLN     SS  S+ EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWRQLDNMGVDFEMVKHFL 81
          RLW+QLD+MGVDFEMVK  L
Sbjct: 61 RLWKQLDSMGVDFEMVKDLL 80

[Close]

BLAST of CmaCh13G011190 vs. ExPASy TrEMBL
Match: A0A1S3B0J1 (transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.8e-22
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSE 60
          MASS L D++L+NL+ KL+TLLPQLN     SS  S+ EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWRQLDNMGVDFEMVKHFL 81
          RLW+QLD+MGVDFEMVK  L
Sbjct: 61 RLWKQLDSMGVDFEMVKDLL 80

[Close]

BLAST of CmaCh13G011190 vs. ExPASy TrEMBL
Match: A0A5D3BKI2 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00710 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1  MASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSE 60
          MASS L D++L+NL+ KL+TLLPQLN     SS  S+ EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWRQLDNMGVDFEM 76
          RLW+QLD+MGVDFEM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]

BLAST of CmaCh13G011190 vs. ExPASy TrEMBL
Match: A0A2P5YWD3 (BHLH domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G185200v1 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.8e-11
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 2  ASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSER 61
          AS+ + DD+L  L+ +L TLLPQLN   H  ++ S+ +ILKETC YI++LQ+EVDDLSER
Sbjct: 4  ASNNITDDELNALILRLGTLLPQLNHGRHGRASPSTTKILKETCSYIRRLQKEVDDLSER 63

Query: 62 LWRQLDNMGV 72
          L + LD+M +
Sbjct: 64 LLQCLDSMDI 73

[Close]

BLAST of CmaCh13G011190 vs. NCBI nr
Match: KAG7020038.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.3 bits (347), Expect = 3.0e-29
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSE 60
          MASSTL DDQLRNLL +LQTLLPQLN TLHT STVS+AEILKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHT-STVSTAEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWRQLDNMGVDFEMVKHFLN 82
          RLW+QLD+MGVDFEMVKH LN
Sbjct: 61 RLWKQLDSMGVDFEMVKHLLN 80

[Close]

BLAST of CmaCh13G011190 vs. NCBI nr
Match: KAG6584448.1 (Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 3.9e-29
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSE 60
          MASSTL DDQLRNLL +LQTLLPQLN TLHT STVS+AEILKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHT-STVSTAEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWRQLDNMGVDFEMVKHFLN 82
          RLW+QLD+MG+DFEMVKH LN
Sbjct: 61 RLWKQLDSMGIDFEMVKHLLN 80

[Close]

BLAST of CmaCh13G011190 vs. NCBI nr
Match: XP_011649678.1 (transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa_014368 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.0e-24
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSE 60
          MASS L DD+L+NL+ KLQTLLPQLN   H SS VS+ EILKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWRQLDNMGVDFEMVKHFLN 82
          RLW+QLD+MG+DFEMVK  L+
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLS 81

[Close]

BLAST of CmaCh13G011190 vs. NCBI nr
Match: XP_008440200.1 (PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 7.9e-22
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSE 60
          MASS L D++L+NL+ KL+TLLPQLN     SS  S+ EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWRQLDNMGVDFEMVKHFL 81
          RLW+QLD+MGVDFEMVK  L
Sbjct: 61 RLWKQLDSMGVDFEMVKDLL 80

[Close]

BLAST of CmaCh13G011190 vs. NCBI nr
Match: XP_038895474.1 (transcription factor PRE5-like [Benincasa hispida])

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-21
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1   MASSTLRDDQLRNLLFKLQTLLPQLN--PTLHTSSTVSSAEILKETCDYIKKLQREVDDL 60
           MASS L DD L+NL+FKLQTLLP LN  P   ++ +VS+ +ILKETCDYIKKLQREVDDL
Sbjct: 42  MASSKLADDDLQNLVFKLQTLLPHLNRKPDNDSAVSVSATDILKETCDYIKKLQREVDDL 101

Query: 61  SERLWRQLDNMGVDFEMVKHFL 81
           SERLW+QLD+MGVD EMVK  +
Sbjct: 102 SERLWKQLDSMGVDLEMVKDLI 123

[Close]

BLAST of CmaCh13G011190 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-10
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 3  SSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSERL 62
          +S + +DQ+ +L+ KLQ LLP+L  +   S  VS+A +L++TC+YI+ L REVDDLSERL
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDS-RRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 73

Query: 63 WRQLDN 69
             L N
Sbjct: 74 SELLAN 78

[Close]

BLAST of CmaCh13G011190 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-10
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 3  SSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSERL 62
          SS + DDQ+ +L+ KLQ L+P+L      S  VS++++L+ETC+YI+ L REVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELR--RRRSDKVSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WRQL---DNMGVDFEMVKHFLN 82
             L   D+   +  +++  LN
Sbjct: 74 SELLASTDDNSAEAAIIRSLLN 93

[Close]

BLAST of CmaCh13G011190 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 60.5 bits (145), Expect = 7.4e-10
Identity = 31/70 (44.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 3  SSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSERL 62
          +S + DDQ+ +L+ KL+  LP+++     S  VS++++L+ETC+YI+KL REVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHER-RRSDKVSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WRQLDNMGVD 73
           + LD++  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of CmaCh13G011190 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-09
Identity = 28/68 (41.18%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 2  ASSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSER 61
          +SS + DDQ+ +L+ KL+  +P++      S+TVS++++L+ETC+YI+ L +E DDLS+R
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDR 71

Query: 62 LWRQLDNM 70
          L + L+++
Sbjct: 72 LTQLLESI 78

[Close]

BLAST of CmaCh13G011190 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 3  SSTLRDDQLRNLLFKLQTLLPQLNPTLHTSSTVSSAEILKETCDYIKKLQREVDDLSERL 62
          +S + D+Q+ +L+ +L  LLP+L      S  VS++ +L+ETC YI+ L +EVDDLSERL
Sbjct: 13 ASMITDEQINDLVLQLHRLLPEL-ANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERL 72

Query: 63 WRQLDN 69
           + L++
Sbjct: 73 SQLLES 77

The following BLAST results are available for this feature:

BLAST of CmaCh13G011190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA64	2.1e-09	50.00	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
Q8GW32	4.7e-09	42.68	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9LJX1	1.0e-08	44.29	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q9LXG5	3.0e-08	41.18	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
A2Z730	5.2e-08	49.18	Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV...	[more]

BLAST of CmaCh13G011190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ05	4.8e-25	76.54	DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1	[more]
A0A5A7SZP9	3.8e-22	72.50	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3B0J1	3.8e-22	72.50	transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1	[more]
A0A5D3BKI2	1.2e-20	73.33	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A2P5YWD3	6.8e-11	54.29	BHLH domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G1852...	[more]

BLAST of CmaCh13G011190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020038.1	3.0e-29	88.89	Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6584448.1	3.9e-29	87.65	Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_011649678.1	1.0e-24	76.54	transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa...	[more]
XP_008440200.1	7.9e-22	72.50	PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcrip...	[more]
XP_038895474.1	2.3e-21	70.73	transcription factor PRE5-like [Benincasa hispida]	[more]

BLAST of CmaCh13G011190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74500.1	1.5e-10	50.00	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT1G26945.1	3.3e-10	42.68	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G28857.1	7.4e-10	44.29	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G15160.1	2.1e-09	41.18	BANQUO 2	[more]
AT3G47710.1	1.8e-08	43.94	BANQUO 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..68
None	No IPR available	PANTHER	PTHR38546:SF3	DNA BINDING PROTEIN	coord: 3..77
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 1..57 e-value: 1.8E-4 score: 30.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 7..52 e-value: 1.2E-7 score: 31.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 1..51 score: 10.162635
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 6..77 e-value: 3.4E-9 score: 38.8
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 7..63
IPR044172	Transcription factor ILI2-like	PANTHER	PTHR38546	DNA BINDING PROTEIN	coord: 3..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G011190.1	CmaCh13G011190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity