CmaCh13G011090 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G011090
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr13: 8305432 .. 8305788 (-)
RNA-Seq ExpressionCmaCh13G011090
SyntenyCmaCh13G011090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGCAGTAAGGATATTGACAAGAAGAAGAAAAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGATGAGACCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGAGGGAGTGGTGTATACTATTGACGCGGCCAAGCGTATGAAGTATGAGGAGCTTTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGTTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

mRNA sequence

ATGTCAGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGCAGTAAGGATATTGACAAGAAGAAGAAAAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGATGAGACCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGAGGGAGTGGTGTATACTATTGACGCGGCCAAGCGTATGAAGTATGAGGAGCTTTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGTTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

Coding sequence (CDS)

ATGTCAGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGCAGTAAGGATATTGACAAGAAGAAGAAAAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGATGAGACCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGAGGGAGTGGTGTATACTATTGACGCGGCCAAGCGTATGAAGTATGAGGAGCTTTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGTTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

Protein sequence

MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK
Homology
BLAST of CmaCh13G011090 vs. ExPASy TrEMBL
Match: A0A6J1KIE4 (uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.5e-56
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60

Query: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 119
           EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK
Sbjct: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 118

BLAST of CmaCh13G011090 vs. ExPASy TrEMBL
Match: A0A6J1EB87 (uncharacterized protein LOC111431590 OS=Cucurbita moschata OX=3662 GN=LOC111431590 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.6e-53
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 0

Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKK--KKDKSKSDENPTDETEILSSADGV 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKK  KKDKSKS+ENPTDE EILSSADGV
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKEKKDKSKSEENPTDEAEILSSADGV 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 119
           EGEEGVVYTIDAAKRMKYEELFPVETR+FGYDPNNADTKFKSVEEALDDRVKKKADRYCK
Sbjct: 61  EGEEGVVYTIDAAKRMKYEELFPVETRRFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 120

BLAST of CmaCh13G011090 vs. ExPASy TrEMBL
Match: A0A0A0LVD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.7e-50
Identity = 106/118 (89.83%), Postives = 114/118 (96.61%), Query Frame = 0

Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSK+DENPTD+ EIL+SADGVE 
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60

Query: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 119
            +G +YTIDAAKRMKYEELFPVETRKFGYDPNN++TKFKSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

BLAST of CmaCh13G011090 vs. ExPASy TrEMBL
Match: A0A5A7SXI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00570 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49
Identity = 104/118 (88.14%), Postives = 114/118 (96.61%), Query Frame = 0

Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60
           MSDPY+GAKGGRLTFKGGVLASRSKDIDKKKKKKKKDK+K+DENPTD+ EIL+SADGVEG
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKTKTDENPTDDGEILTSADGVEG 60

Query: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 119
            +G +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

BLAST of CmaCh13G011090 vs. ExPASy TrEMBL
Match: A0A1S3AWC8 (uncharacterized protein LOC103483601 OS=Cucumis melo OX=3656 GN=LOC103483601 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49
Identity = 104/118 (88.14%), Postives = 114/118 (96.61%), Query Frame = 0

Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60
           MSDPY+GAKGGRLTFKGGVLASRSKDIDKKKKKKKKDK+K+DENPTD+ EIL+SADGVEG
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKTKTDENPTDDGEILTSADGVEG 60

Query: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 119
            +G +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

BLAST of CmaCh13G011090 vs. NCBI nr
Match: XP_023001360.1 (uncharacterized protein LOC111495520 [Cucurbita maxima] >XP_023001361.1 uncharacterized protein LOC111495520 [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 9.3e-56
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60

Query: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 119
           EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK
Sbjct: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 118

BLAST of CmaCh13G011090 vs. NCBI nr
Match: KAG7020027.1 (hypothetical protein SDJN02_18995, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.4 bits (555), Expect = 3.3e-53
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 0

Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDID--KKKKKKKKDKSKSDENPTDETEILSSADGV 60
           MSDPYSGAKGGRLTFKGGVLASRSKDID  KKKKKKKKDKSKS+ENPTDE EILSSADGV
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKKKDKSKSEENPTDEAEILSSADGV 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 119
           EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK
Sbjct: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 120

BLAST of CmaCh13G011090 vs. NCBI nr
Match: XP_022924043.1 (uncharacterized protein LOC111431590 [Cucurbita moschata])

HSP 1 Score: 217.2 bits (552), Expect = 7.4e-53
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 0

Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKK--KKDKSKSDENPTDETEILSSADGV 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKK  KKDKSKS+ENPTDE EILSSADGV
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKEKKDKSKSEENPTDEAEILSSADGV 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 119
           EGEEGVVYTIDAAKRMKYEELFPVETR+FGYDPNNADTKFKSVEEALDDRVKKKADRYCK
Sbjct: 61  EGEEGVVYTIDAAKRMKYEELFPVETRRFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 120

BLAST of CmaCh13G011090 vs. NCBI nr
Match: KAG6584439.1 (Basic transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 0

Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDID--KKKKKKKKDKSKSDENPTDETEILSSADGV 60
           MSDPYSGAKGGRLTFKGGVLASRSKDID  KKKKKKKKDKSKS+ENPTDE EILSSADGV
Sbjct: 26  MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKKKDKSKSEENPTDEAEILSSADGV 85

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 117
           EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY
Sbjct: 86  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 143

BLAST of CmaCh13G011090 vs. NCBI nr
Match: XP_038893643.1 (uncharacterized protein LOC120082512 [Benincasa hispida])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 107/118 (90.68%), Postives = 114/118 (96.61%), Query Frame = 0

Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60
           MSDPY+G KGGRLTFKGGVLASRSKDIDKKKKKKKKDKSK++ENPTDE EILSSADGVEG
Sbjct: 1   MSDPYAGVKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTEENPTDEAEILSSADGVEG 60

Query: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 119
            +G +YTIDAAKRMKYEELFPVETRKFGYDPNN++TKFKSVEEALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 118

BLAST of CmaCh13G011090 vs. TAIR 10
Match: AT2G25720.1 (unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 6.5e-23
Identity = 64/120 (53.33%), Postives = 77/120 (64.17%), Query Frame = 0

Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSD--ENPTDETEILSSADGV 60
           MSDPY    GGRL FKGG LA+R     KKKKK+KK+K K D  E+        S     
Sbjct: 1   MSDPYERVNGGRLAFKGGDLATRKSIEKKKKKKQKKNKEKLDGVEDGAKTAPDGSPPPAA 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 119
              +  +Y+IDAAK+ KY++LFPVE +KFGY P      F+S E+ALDDRVKKKADRYCK
Sbjct: 61  AAGDEDIYSIDAAKKKKYDDLFPVEAKKFGYIPK---ANFESREDALDDRVKKKADRYCK 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KIE44.5e-56100.00uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520... [more]
A0A6J1EB873.6e-5395.83uncharacterized protein LOC111431590 OS=Cucurbita moschata OX=3662 GN=LOC1114315... [more]
A0A0A0LVD63.7e-5089.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1[more]
A0A5A7SXI82.4e-4988.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AWC82.4e-4988.14uncharacterized protein LOC103483601 OS=Cucumis melo OX=3656 GN=LOC103483601 PE=... [more]
Match NameE-valueIdentityDescription
XP_023001360.19.3e-56100.00uncharacterized protein LOC111495520 [Cucurbita maxima] >XP_023001361.1 uncharac... [more]
KAG7020027.13.3e-5396.67hypothetical protein SDJN02_18995, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022924043.17.4e-5395.83uncharacterized protein LOC111431590 [Cucurbita moschata][more]
KAG6584439.11.1e-5196.61Basic transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_038893643.11.2e-5090.68uncharacterized protein LOC120082512 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT2G25720.16.5e-2353.33unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availablePANTHERPTHR13282:SF7OS04G0566000 PROTEINcoord: 1..118
IPR013865Protein FAM32APANTHERPTHR13282UNCHARACTERIZEDcoord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G011090.1CmaCh13G011090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005730 nucleolus