CmaCh13G010260 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G010260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B
LocationCma_Chr13: 7857722 .. 7862872 (+)
RNA-Seq ExpressionCmaCh13G010260
SyntenyCmaCh13G010260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGCGTTGTGCTCCCGTGTAGGTGCGAGAGAGCGATCCTGAGAACTGAGCAGGCAAAGAGAAGAGGGGAAAAAAACTATGGGGAGGAAGAAGACAGTCGAATTCGATGAATCTCCGCCGGATGATTTCGATCCGGAGCATCCGTATAAGGATCCAGTGGCGATGCTGGAGATGAGGGAACACATCGTGAGAGAGAAGTGGATCGAAATAGAAAAGGCGAAGATACTGAGGGAAAAGCTCAGATGGTGCTACCGTATTGAAGGGGTCAACCACCTTCAGAAATGCCGCCACCTTGTTCAACAATACCTCGATTCCACTCGCGGCATCGGCTGGGGCAAGGATGGACGCCACCCATCCCTTCATGGTTCTCTCTTTTCGTCTTAATTTCTGTTTAATTTCTGAGAAATATTATCATTTCTGCAATCTTTGGTTGAAAATGGAGATACTTCGAGTCGCTGATGGTTGGCTGTGATTGGGTGATGCTCATAAGTGGAAATATGCTCCGTTTTGGAAGTGTTGTTTCCTGAAATATCGTTGGTTTATAAATCCGTGGATATGTACTTTTCGAAATTAATCTGATTCATGTCAACCTTTTGAATTTGGTGCTCGTTGGCTAGATTATTCTTCTTTTTTTTTCTTCGGGTTTCCTATGCAATTTCAATGACCGAAAAAATGTGACTCTCCCTCCTTTATGATCATCTGATGCTGTTTCTTCTTGTTTTTGGTTAGGTCCTAAAGTGGAGTCAGTGGAATCGGAGTGAATCTCTGGGAGGAATAACGGTGAGTTCGAATGTTCGCAAGTTTTTTTTTTTGGCTAATTTTAGTACTTGATCGTACCGATAATCAAACCTTTTTTTTAGTCAGTGCTTGAATAAATTAACAGTGTATATTAGCTTGAATTAATCAACAAGCTCTATGCTTTATTTCGTCTACTGCTTTGAGGTGTGTAAAGAAGCATTAACTCAGATCAGTGGTTAATAATTTCACTTAGTTTTCTATTTCTCTGTTGAGTGAGAACTTTGTAGGAATGTACAGCAAGCTTTCCTAAAAATTTTCTGACTGGTGGCTTGTTTTTTAGAACGATTGAAATTGCTAACATGTCACTCGTTCACAGTTCCTTTAAGTGATGTAGGAGACACGATAATAACATTAAGTGGGGTGTTATTGAAGCTGAAGGTAACTCTAGGGGTGTGTCATTCAGTGGGTTCCTCGTAATTTGTTGTCCTTAGAAGTTGTGTGAGTTGGGGATATCGTCATTCTGTGGGATCTTCCTAATTTTTTGGCCTTAGAAGTGGTGTGAGCTGCTTCTCCTCATTTGTATAGTTTTGTTCAAGTTCACAATTAGTTGGAACTGGATTCCCCCTCTTGTGAGTGGTAACTTCTCTTGTTCCAATCTTTGTGCTTTACTAGTATGTCATTCTTTTATTGTCAAGAGGGTGGCTGGATATTTTTCAAGGATATCAAAAAATATTTTTAGTTGTAGTATTTTGGACCATTGGCCTATTCTTTTCAACGTTAGGGTTGCTGAGTGGGGTCTTTAGCTGTTCATTTTTTTTCAGAATAGAGTTATGAATGACAACCCAAATGAAACCTACATATGTTTGGTCTCAAAGAAATTGGATGTTTGCACTGTTGCAGACTTTTTCCCTTAAGTCTTACAATTGAACTATATAAAATCATAGCAAAGGTGCTATCAGAACATCTTAAAAAGGTTCTCCCTCTCACAATTAATGGATGGCCTTAGTCGCCTACTCACAAAGATCGAAGACGAAGGGCAGATAAACAGCTTTTAGATTAGCTTGTAGGCTTCATAATCAACCACCATCAGTTCGCGGACACAATCCTCTTTTTAGATTTGTTGGATATCTCTTCCATAAAAAACATGCTCAAGACAATAAAAACCTTCAAAAGAATCTCGGAACAAAATATCAATCTCCAAAAGATAGAGATTATGGGCATCATATGTTAGCACAAAATTATTGAAGAATTAACCAACAGATGACAAAAAAAAAAGGGGGGAATGGCCAAATATGTATCTAGGATTACCCCAAAGGAAAACCACAAATCCTTTTACTTTTGGAAGACTTGTAGAAAAATAGAAAGAAGGCTGTCAACATGATCATTATGTTTTACTACAAAAGGGGAAGACTCACCCTAATACAAGCCACACTATCCAATCTCTTCACTTAGTACACGTTTCTATTTGAAAAGAAAGATTATTTAGAAACTATCTGTGGGAAGGATGACACACGTCTTGTTTGATAGACCTTGTTTGATAGAATATCATAAACTTCCCAGCAGAAAAAGGAGGACTTGGTTTATTTTCAATGAAGAACAAAGTTCTACTTGCAAAATGGATATGGAGATACCATCACACAAAAAAATTGTGGAGAAAACTTATATTTCCAAATTGGTGTCCATTATGCAAGAGTGACAATGAAACACAAAGCCGCTTATTTATGCAATGCACATATGCTCAAAATTTCTGGACAAAGATTCTTATTATCTTCGGATGACATCTCATATTTCCTAGGGAGGTCAAGGATTTATTGTACATGACTTGGTCGCACCATCCTTTCAATAATGCAAAAACTCTACTATGAAAAAATTTCATCATGGCTTTCTTTTGGAATCTGTGAAAGAAAGAAATCAAAGAATTTTCACGAAAAAGACGCAAACTTATACAAAACTCTTCGATAATGTTGTTTATCAAGCTATATCTTGGTGTAAATTGTCTAATATTTTCGCTTCCAACAGTTGTACCCTCCCTCATTCTGTAAATTTTAAACATCAATGAAATTGTCTCTTTTATATATATATATATATATTTTTTTTTTTTTTTTTNATTTTAAACATCAATGAAATTGTCTCTTTTATATATATATATATATATTTTTTTTTTTTTTTTCTCCCTACCATGTCAAATAAAAGTTCTATTTTGTTAGCTTCTTATCATCCAATTATTCTGTCACACCACTTCTCTTCATATATTAAAAAATTATTTATATTTTTCTAATGTTAGCCTAAAAAAAATCCACGTTTTTTTTGTTCTTTTTTTTCCCGCTCCTTATGCTTGTGCCCCGGAGGAGTATTACCCTTTAGTGTGCCTCAAGATTTAAATAAACATTGGGTTGTTTCTAATCAATTGCCCTTAGGTGGTTCGTTTGTTGTAAATTTTACTCTTGAATAGCCTGTCTAGAAGTGAAGTCAACAATCCATCCTCCATACGTTGTGTTCCCCTCTTTGTCCAGATTTGAATGCTTGTTGTATTTGGACTCTTGTGTCCCCGGGGTGCTCTTGATAATCTCTCTTTCTGTATTTAGTTGTCTGAAGTTCTCCTTGACTATTTTTTTCTTGTTTATTTAGCACTACTACCAAGGAAGTTATCTAGAGTTCCTCGTGTGTCCTTCATTTATGAGCGAAGATTTATTTATATCCTGTTAAGATGTCATTTTTTGCGAAGATTTGGGATAAGCAGAGACTGTCATGATGGAGCGAGGAGTGTTGGAATCCACCTATTTGTCATGAAGGGGAAAGCCTCTCTTTTGAATTCACCCATTCATGAAGGAAGGGTTTTGGTAAAGAAAATGAAGCCCGACACACTTTAAATAATCTAAATATTCAATACACAATTTTTAGTAACTGCCCTCTATTTTTATTCTCAAACAATTGGGGGCCTCTTATTATAGTTGTATTATTTTTCTTGTTTGGGCTCCCTTTTCCTTTCAGCCTTATTAGTCTTGTGTAGCACGGTCTTTCTTTGTTCAGAGGGAAAACAGATTATTCAATTAAAAGAAAGAAAAAACAGAAATGGATAATGGATAATAAAGAAAAACTATGAACTTGAACTAGGCTGGAGTTTGGTCTTGCTGGAAAGAGTGATATAGCTACCTTTCCACTATAGTCTGAACTAAGTATATATTAGAACTGAATGGATGTTTCTTTTAATAATCAAACCAAATTTTATTGGGACAAAAAGTACAAAAAGGGCCACAACCCAACTATGAAAGGGACTACGAACAAAAAATTGCAAAAAAGAGCCCCAGCCTCTGAAGACTTGAAAATTCTTTGTTTCTTTCCTACCAAAAATTTCATAGAATAACAAATTAGCCAGCCTGCCACAACAAATAGCTTGTATCCTAAAAAGTAGTGCCTAAGATAACTTCATCATTGCACGACCTGAATTTATAACTGAAGAGCCTGCCAACTACAATGTCACGCCTTACTAGAACAATGGCAAAGCCGTAAAAGATGGTTTGAATCTTCCAAAGTACACCTAATACACTAGAGGACCGAAGAGGGGAAAAAAAAAAAAAAAAAAAAAAGATTCTTTTGTTGAAGTTATCAAAAATATTCCTCCTAAATCAGCCAAGAAAACAGCCTAATTTCTTCAGGATCTTCAATTTCCAAAACTTGGAGAAGAAAGGGTGGAGAGAAGAAATGAGGGAAGAAAATATTGGATGTCCAAAGTCTTGCAGGAAGAATAACACAGGGCTGAACAGAGACCCTTCGGATTACAACATATGAAGGATAACTGAATGCTAATTTGTACTTGCTAGTTATGTGGCTGATGCCTTTGGTGGTTCTTGCTTGTCATTATTTCTTATTCGGAGATGAAGATACAGGTTTTCGCATCTTTTGCAGGTGAACAAAATGGCTTGCAGGAAAATGTTCGGATGGCTTGCCTCCTTGTGATCTGTTTTATTATCAGGGCCTCATCAGCTGCAGTTTTTTTTATCATTATTACTTTCTTTCTTGTTTCAAAAAAGGAATATGCATGGATCACACACAGTACCATGGGCAATTGATTTACGTTAGGTTTCATGTTATTGCCTGCAATTGCCAATTACTTGGACATCGGAAAAACACCCAAATAATCAAACATCTGCCACTGCATGCTTCTGTTCAACTTTGTATTTGTTTTCTGTTAAACAATGGTTTCATCTGGTTGCCAGCTTTAGATATAATCGGAAGTGATGCTCCTAAAGTATAGCGGAAGACTTCATGGTCGATTCATTGAGTTTGTATAATTGTATTAAAGGTATATTTAGTATGCCTTCTAGTTTAAGCACTTTAGAGTCATTTTTTAATAAATCATTTCTCAACAGTTTCTTTAAATTAATCCAATTTCAGAAGTACTATACATTGATT

mRNA sequence

GGGGCGTTGTGCTCCCGTGTAGGTGCGAGAGAGCGATCCTGAGAACTGAGCAGGCAAAGAGAAGAGGGGAAAAAAACTATGGGGAGGAAGAAGACAGTCGAATTCGATGAATCTCCGCCGGATGATTTCGATCCGGAGCATCCGTATAAGGATCCAGTGGCGATGCTGGAGATGAGGGAACACATCGTGAGAGAGAAGTGGATCGAAATAGAAAAGGCGAAGATACTGAGGGAAAAGCTCAGATGGTGCTACCGTATTGAAGGGGTCAACCACCTTCAGAAATGCCGCCACCTTGTTCAACAATACCTCGATTCCACTCGCGGCATCGGCTGGGGCAAGGATGGACGCCACCCATCCCTTCATGGTCCTAAAGTGGAGTCAGTGGAATCGGAGTGAATCTCTGGGAGGAATAACGGTGAACAAAATGGCTTGCAGGAAAATGTTCGGATGGCTTGCCTCCTTGTGATCTGTTTTATTATCAGGGCCTCATCAGCTGCAGTTTTTTTTATCATTATTACTTTCTTTCTTGTTTCAAAAAAGGAATATGCATGGATCACACACAGTACCATGGGCAATTGATTTACGTTAGGTTTCATGTTATTGCCTGCAATTGCCAATTACTTGGACATCGGAAAAACACCCAAATAATCAAACATCTGCCACTGCATGCTTCTGTTCAACTTTGTATTTGTTTTCTGTTAAACAATGGTTTCATCTGGTTGCCAGCTTTAGATATAATCGGAAGTGATGCTCCTAAAGTATAGCGGAAGACTTCATGGTCGATTCATTGAGTTTGTATAATTGTATTAAAGGTATATTTAGTATGCCTTCTAGTTTAAGCACTTTAGAGTCATTTTTTAATAAATCATTTCTCAACAGTTTCTTTAAATTAATCCAATTTCAGAAGTACTATACATTGATT

Coding sequence (CDS)

ATGGGGAGGAAGAAGACAGTCGAATTCGATGAATCTCCGCCGGATGATTTCGATCCGGAGCATCCGTATAAGGATCCAGTGGCGATGCTGGAGATGAGGGAACACATCGTGAGAGAGAAGTGGATCGAAATAGAAAAGGCGAAGATACTGAGGGAAAAGCTCAGATGGTGCTACCGTATTGAAGGGGTCAACCACCTTCAGAAATGCCGCCACCTTGTTCAACAATACCTCGATTCCACTCGCGGCATCGGCTGGGGCAAGGATGGACGCCACCCATCCCTTCATGGTCCTAAAGTGGAGTCAGTGGAATCGGAGTGA

Protein sequence

MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRIEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE
Homology
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BLAST of CmaCh13G010260 vs. ExPASy Swiss-Prot
Match: Q94C12 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis thaliana OX=3702 GN=At3g18410 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-46
Identity = 86/106 (81.13%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MGRKKTV-EFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPE+PYKDPVAM+EMREHIVREKWI+IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK E+VE+E
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]
BLAST of CmaCh13G010260 vs. ExPASy Swiss-Prot
Match: Q9M9B4 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis thaliana OX=3702 GN=At1g49140 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.6e-44
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 0 

Query: 1   MGRKKTV-EFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPE+PYKDPVAM+EMREHIVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVE 104
           +EGVNH QKCRHLVQQYLD+TRG+GWGKD R  SLHGPK  +VE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVE 104

[Close]
BLAST of CmaCh13G010260 vs. ExPASy Swiss-Prot
Match: Q03015 (NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=nuo-12.3 PE=3 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 23/55 (41.82%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 23 YKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRIEGVNHLQKCRHLVQQYL 78
          Y D   + + ++ I+RE+W+ +   +++RE+L  CY  EGVNHL+KC HL ++YL
Sbjct: 25 YNDTKRLKQAQDAIIREQWVRVMMGRLVREELSKCYYREGVNHLEKCGHLRERYL 79

[Close]
BLAST of CmaCh13G010260 vs. ExPASy Swiss-Prot
Match: P80267 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (Fragment) OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.9e-04
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 0 

Query: 2  GRKKTVEFDESPPDDFDPEHPYKDPVAML 31
          GRKK V+FDE  PDDFDP +PYK  VA L
Sbjct: 1  GRKKGVQFDEGAPDDFDPNNPYKKDVAFL 29

[Close]
BLAST of CmaCh13G010260 vs. ExPASy TrEMBL
Match: A0A6J1KJX6 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita maxima OX=3661 GN=LOC111495279 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 8.9e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]
BLAST of CmaCh13G010260 vs. ExPASy TrEMBL
Match: A0A6J1E7Z3 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita moschata OX=3662 GN=LOC111431621 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 8.9e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]
BLAST of CmaCh13G010260 vs. ExPASy TrEMBL
Match: A0A6J1GRC0 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita moschata OX=3662 GN=LOC111456807 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.8e-54
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD EHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE+VE+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]
BLAST of CmaCh13G010260 vs. ExPASy TrEMBL
Match: A0A6J1JUQ8 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita maxima OX=3661 GN=LOC111489918 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.4e-54
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD EHPYKDPVAMLEMREHIVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE+VE+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]
BLAST of CmaCh13G010260 vs. ExPASy TrEMBL
Match: A0A0A0LSZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042310 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.1e-53
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPE+PYKDPVAMLEMRE+IVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  ESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 105

[Close]
BLAST of CmaCh13G010260 vs. NCBI nr
Match: XP_022924082.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita moschata] >XP_023001015.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita maxima] >XP_023519758.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita pepo subsp. pepo] >XP_023519759.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita pepo subsp. pepo] >KAG7019947.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.7 bits (574), Expect = 1.8e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]
BLAST of CmaCh13G010260 vs. NCBI nr
Match: XP_038894613.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida] >XP_038894614.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida] >XP_038894615.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida])

HSP 1 Score: 221.9 bits (564), Expect = 2.7e-54
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE+ ESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAAESE 105

[Close]
BLAST of CmaCh13G010260 vs. NCBI nr
Match: XP_022954577.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata] >XP_022954578.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata] >XP_022954579.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata] >KAG7012120.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.3 bits (560), Expect = 7.8e-54
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD EHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE+VE+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]
BLAST of CmaCh13G010260 vs. NCBI nr
Match: XP_022994087.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994089.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994090.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994091.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994092.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima])

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-53
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD EHPYKDPVAMLEMREHIVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE+VE+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]
BLAST of CmaCh13G010260 vs. NCBI nr
Match: XP_004137473.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucumis sativus] >XP_004137474.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucumis sativus] >XP_008457988.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucumis melo] >KGN64119.1 hypothetical protein Csa_013648 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPE+PYKDPVAMLEMRE+IVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  ESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 105

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BLAST of CmaCh13G010260 vs. TAIR 10
Match: AT3G18410.1 (Complex I subunit NDUFS6 )

HSP 1 Score: 184.5 bits (467), Expect = 4.4e-47
Identity = 86/106 (81.13%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MGRKKTV-EFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPE+PYKDPVAM+EMREHIVREKWI+IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK E+VE+E
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]
BLAST of CmaCh13G010260 vs. TAIR 10
Match: AT3G18410.2 (Complex I subunit NDUFS6 )

HSP 1 Score: 184.5 bits (467), Expect = 4.4e-47
Identity = 86/106 (81.13%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MGRKKTV-EFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPE+PYKDPVAM+EMREHIVREKWI+IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK E+VE+E
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]
BLAST of CmaCh13G010260 vs. TAIR 10
Match: AT1G49140.1 (Complex I subunit NDUFS6 )

HSP 1 Score: 177.6 bits (449), Expect = 5.4e-45
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 0 

Query: 1   MGRKKTV-EFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPE+PYKDPVAM+EMREHIVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVE 104
           +EGVNH QKCRHLVQQYLD+TRG+GWGKD R  SLHGPK  +VE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVE 104

The following BLAST results are available for this feature:
BLAST of CmaCh13G010260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94C126.2e-4681.13NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis th... [more]
Q9M9B47.6e-4479.81NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis th... [more]
Q030151.1e-0741.82NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crass... [more]
P802675.9e-0468.97NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (Fragment) OS=Solan... [more]
BLAST of CmaCh13G010260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KJX68.9e-56100.00NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita maxi... [more]
A0A6J1E7Z38.9e-56100.00NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita mosc... [more]
A0A6J1GRC03.8e-5497.14NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita... [more]
A0A6J1JUQ88.4e-5496.19NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita... [more]
A0A0A0LSZ47.1e-5395.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042310 PE=3 SV=1[more]
BLAST of CmaCh13G010260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022924082.11.8e-55100.00NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita moscha... [more]
XP_038894613.12.7e-5497.14NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispid... [more]
XP_022954577.17.8e-5497.14NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita m... [more]
XP_022994087.11.7e-5396.19NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita m... [more]
XP_004137473.11.5e-5295.24NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucumis sativus]... [more]
BLAST of CmaCh13G010260 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G18410.14.4e-4781.13Complex I subunit NDUFS6 [more]
AT3G18410.24.4e-4781.13Complex I subunit NDUFS6 [more]
AT1G49140.15.4e-4579.81Complex I subunit NDUFS6 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..105
NoneNo IPR availablePANTHERPTHR13094:SF3BNAA01G26750D PROTEINcoord: 1..105
IPR039993NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10PANTHERPTHR13094NADH-UBIQUINONE OXIDOREDUCTASE PDSW SUBUNITcoord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G010260.1CmaCh13G010260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005747 mitochondrial respiratory chain complex I