CmaCh13G010080 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G010080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribosomal protein S24/S35, mitochondrial
Location	Cma_Chr13: 7773625 .. 7775367 (+)
RNA-Seq Expression	CmaCh13G010080
Synteny	CmaCh13G010080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACCCTAGAACTGCTAAGCAACGCCATGAAACGAGCTATATGGGGAGCTGTCTTCGCTGCCTGTTCTCGGAGGGTTTCCATCCCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTCCATTTTCCGTTTCGATTTCGTCCCAATCGCGATGTTACTCGTCCGGGAATGACAAGTACAATGGATTGAACTCAACAACGATTGAAAACAAGGATTCTCTCGTCGACGATTATGTCAGTAACGAAGGTAAAATATAGTTGAATGTTGTTTGTCAAAGCTCTCTGTGTTTTCTTTCTAGGAAAAGATTTTTTAAATAGATTTTTTTTTTTGTTGGAATTGTTTCGAGAAAGTGGAGGGTTGTTAGGGGCATCATTTGCATAACAATGTCTCGATTCCGATTCTTAGTGCAACTTCTCATATTTTTTCCTAATCTTGCAAAGAAATTTGGGTACTGTAAATTATATTCTCGTATTTCTAAGCATGAATCATCTTCTATCGTATTATATTTATATTTACTTTCTGCGGTTTAATAGTTTGAGTTCTTGTAATATTAGTATAACATAGTCGTTACCTATGAAATTTTGAATGATATCCTCCTCTTATGTATATGTTGTTTAATACTGGAAATTTTAGATTAGATGTTCAGAAGCGTCGTTAAAGAAACTACCTGGCAACAAGTGCAATAAAATTTCATTTTGTTTTGTTGGTTCTAGTGTATGTTGAAACTGCTCGTAATCAAATTAGAGATAAGTTTTGAATAATCAATATTTTGAGAATGATGTGAAAATAATTACTACTTCAAAGCAATTTAAGTGAAAGAAGAGTATAAAGATCAGCGAGAGAAAGCGATTAATGAAGTATTTTAACCATTTCATGATTAAGGGAGCCTTGATTGACCCCCAAAGTTGTGTAAAGAGCTTGATATTTCTGGATTGCTCATATTGACATGAAGTTCATTTGCAACTCTATTCATTTTTTTTGTAGTATGTTTTTCTTTTTAGAAGGCAATGAAAGCAATAGATACACTCAGGTTCGATCTTAGACAGTAAGTTTTTTCTGATTACAGAGCTGAAGAGGAAAATTGATAGATTTTACGAGGGTGACGTTGAGTCATTACCAACAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCTGCAGCGAATGCCTGGAGAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAAGTGGTGATTTGAATGAAACTGATGAAGAAATGGAGGAGGATTCCAGTGAGGAAGAAGACAGATGAGTATATGTTAATGTTAGATCATACATTTTTGGGTGGAAAATGGTCAAATTTTGATAGCTTATTCAGGGTGGTCTATGGGAACCTCAACTCCTAACTTGGGGAACTTTGTTTCATGGGGAGTTGTATGCTTTATATGTCTTTTAATGCCAATAGTTGCAATAATAACATTATTGTAGAACGATCGTGGGGGATGTGAGATTGAGATTGAACTTTTGACCACAAGAGGAAAAGAAGTGCATACTAATTACTGTTCATCTCAGTTTACTTTAGCTTTATAACATTATTTTTTACTGTCATCCTTGCCACCTCCACCTTGTTCGTTGTCGTTCACTTATTTTGATCTCGTTGCCTAAAAACTAAGATATAATGCCACTTGTATCCTAGTTTTTTTTAATATAAATTTATACTATCGT

mRNA sequence

TAAACCCTAGAACTGCTAAGCAACGCCATGAAACGAGCTATATGGGGAGCTGTCTTCGCTGCCTGTTCTCGGAGGGTTTCCATCCCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTCCATTTTCCGTTTCGATTTCGTCCCAATCGCGATGTTACTCGTCCGGGAATGACAAGTACAATGGATTGAACTCAACAACGATTGAAAACAAGGATTCTCTCGTCGACGATTATGTCAGTAACGAAGAGCTGAAGAGGAAAATTGATAGATTTTACGAGGGTGACGTTGAGTCATTACCAACAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCTGCAGCGAATGCCTGGAGAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAAGTGGTGATTTGAATGAAACTGATGAAGAAATGGAGGAGGATTCCAGTGAGGAAGAAGACAGATGAGTATATGTTAATGTTAGATCATACATTTTTGGGTGGAAAATGGTCAAATTTTGATAGCTTATTCAGGGTGGTCTATGGGAACCTCAACTCCTAACTTGGGGAACTTTGTTTCATGGGGAGTTGTATGCTTTATATGTCTTTTAATGCCAATAGTTGCAATAATAACATTATTGTAGAACGATCGTGGGGGATGTGAGATTGAGATTGAACTTTTGACCACAAGAGGAAAAGAAGTGCATACTAATTACTGTTCATCTCAGTTTACTTTAGCTTTATAACATTATTTTTTACTGTCATCCTTGCCACCTCCACCTTGTTCGTTGTCGTTCACTTATTTTGATCTCGTTGCCTAAAAACTAAGATATAATGCCACTTGTATCCTAGTTTTTTTTAATATAAATTTATACTATCGT

Coding sequence (CDS)

ATGAAACGAGCTATATGGGGAGCTGTCTTCGCTGCCTGTTCTCGGAGGGTTTCCATCCCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTCCATTTTCCGTTTCGATTTCGTCCCAATCGCGATGTTACTCGTCCGGGAATGACAAGTACAATGGATTGAACTCAACAACGATTGAAAACAAGGATTCTCTCGTCGACGATTATGTCAGTAACGAAGAGCTGAAGAGGAAAATTGATAGATTTTACGAGGGTGACGTTGAGTCATTACCAACAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCTGCAGCGAATGCCTGGAGAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAAGTGGTGATTTGAATGAAACTGATGAAGAAATGGAGGAGGATTCCAGTGAGGAAGAAGACAGATGA

Protein sequence

MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEILQRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR

Homology

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BLAST of CmaCh13G010080 vs. ExPASy TrEMBL
Match: A0A6J1KP40 (uncharacterized protein LOC111495236 OS=Cucurbita maxima OX=3661 GN=LOC111495236 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.4e-79
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120
           IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL
Sbjct: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 161
           QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 160

[Close]

BLAST of CmaCh13G010080 vs. ExPASy TrEMBL
Match: A0A6J1E804 (uncharacterized protein LOC111431572 OS=Cucurbita moschata OX=3662 GN=LOC111431572 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 151/160 (94.38%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRAIWGAVF ACSRRVSI PLLQTLRSGPLLP FSVSISSQSRCYSSGNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120
           IENKDSLVDD VSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEI 
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 161
           QR+PGEVEDFKDEEYDSDLSG+LNE+DEEM+EDSSEEEDR
Sbjct: 121 QRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDR 160

[Close]

BLAST of CmaCh13G010080 vs. ExPASy TrEMBL
Match: A0A5D3BIA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002170 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 9.8e-46
Identity = 109/153 (71.24%), Postives = 121/153 (79.08%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRA+WGAVF  CSR +S+ P L+T RS PLL PFSV      RCYSSGNDKYN LNST 
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSV---FTLRCYSSGNDKYNELNST- 60

Query: 61  IENKDSLVDDYVSNEELKRKIDRFYE-GDVESLPTIFEAILKRKLSGKHGDADDELMKEI 120
            +NKDSLVDD VS EELKRKID+FYE GD +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEI 120

Query: 121 LQRMPGEVEDFKDEEYDSDLSGDLNETDEEMEE 153
            QRMPGE+EDFK EEYDS+L+ D     EE ++
Sbjct: 121 RQRMPGEIEDFKGEEYDSELTDDAASDSEEEDK 148

[Close]

BLAST of CmaCh13G010080 vs. ExPASy TrEMBL
Match: A0A1S3CEX3 (uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 9.8e-46
Identity = 109/153 (71.24%), Postives = 121/153 (79.08%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRA+WGAVF  CSR +S+ P L+T RS PLL PFSV      RCYSSGNDKYN LNST 
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSV---FTLRCYSSGNDKYNELNST- 60

Query: 61  IENKDSLVDDYVSNEELKRKIDRFYE-GDVESLPTIFEAILKRKLSGKHGDADDELMKEI 120
            +NKDSLVDD VS EELKRKID+FYE GD +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEI 120

Query: 121 LQRMPGEVEDFKDEEYDSDLSGDLNETDEEMEE 153
            QRMPGE+EDFK EEYDS+L+ D     EE ++
Sbjct: 121 RQRMPGEIEDFKGEEYDSELTDDAASDSEEEDK 148

[Close]

BLAST of CmaCh13G010080 vs. ExPASy TrEMBL
Match: A0A6J1C5J6 (uncharacterized protein LOC111008596 OS=Momordica charantia OX=3673 GN=LOC111008596 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.4e-44
Identity = 112/167 (67.07%), Postives = 126/167 (75.45%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60
           M RA+W AVF   +R VSI P LQT  SG     F+V  S Q RCYSS NDKYNGLNSTT
Sbjct: 1   MNRALWRAVFNVYARSVSISPPLQTPCSGHFPARFAVLASLQPRCYSSKNDKYNGLNSTT 60

Query: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120
            +N  S+VDD VS EELKRKID+FYEGDVESLP+IFEAILKRKLSGKH  ADDELMKEI 
Sbjct: 61  NQNDHSVVDDDVSTEELKRKIDKFYEGDVESLPSIFEAILKRKLSGKHEGADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDS-------SEEEDR 161
           QRMPG++EDFKD+E  SDL+G   ETDEE+++ S       SEEEDR
Sbjct: 121 QRMPGQMEDFKDDECASDLNG-FEETDEEIDDFSHARDSSDSEEEDR 166

[Close]

BLAST of CmaCh13G010080 vs. NCBI nr
Match: XP_023000953.1 (uncharacterized protein LOC111495236 [Cucurbita maxima])

HSP 1 Score: 305.4 bits (781), Expect = 2.8e-79
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120
           IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL
Sbjct: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 161
           QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 160

[Close]

BLAST of CmaCh13G010080 vs. NCBI nr
Match: XP_023519890.1 (uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.3 bits (734), Expect = 7.9e-74
Identity = 151/160 (94.38%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRAIWGAVF  CSRRVSI PLLQTLRSGPLLPPFSVSI+SQSRCYS+GNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120
           IENKDSLVDD VSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEI 
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 161
           QRMPGEVEDFKDEEYDSDLSG+LNETDEEMEED SEEEDR
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPSEEEDR 160

[Close]

BLAST of CmaCh13G010080 vs. NCBI nr
Match: KAG7019929.1 (hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285.8 bits (730), Expect = 2.3e-73
Identity = 150/160 (93.75%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRAIWGAVFAACSRRVSI PLLQTLRSGPLLP FSVSISSQSRCYSSGNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120
           IENKDSLVDD +SNEELKRKIDRFYEGD+ESLP IFEAILKRKLSGKHGDADDELMKEI 
Sbjct: 61  IENKDSLVDDDISNEELKRKIDRFYEGDIESLPAIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 161
           QRMPGEVEDFKDEEYDSDLSG+LNE+DEEM+EDSSEEEDR
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDR 160

[Close]

BLAST of CmaCh13G010080 vs. NCBI nr
Match: XP_022924024.1 (uncharacterized protein LOC111431572 [Cucurbita moschata])

HSP 1 Score: 285.4 bits (729), Expect = 3.0e-73
Identity = 151/160 (94.38%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRAIWGAVF ACSRRVSI PLLQTLRSGPLLP FSVSISSQSRCYSSGNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120
           IENKDSLVDD VSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEI 
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 161
           QR+PGEVEDFKDEEYDSDLSG+LNE+DEEM+EDSSEEEDR
Sbjct: 121 QRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDR 160

[Close]

BLAST of CmaCh13G010080 vs. NCBI nr
Match: KAG6584340.1 (hypothetical protein SDJN03_20272, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 284.6 bits (727), Expect = 5.1e-73
Identity = 150/160 (93.75%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRAIWGAVFAACSRRVSI PLLQTLRSGPLLP FSVSISSQSRCYSSGNDKYNGLNST+
Sbjct: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60

Query: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120
           IENKDSLVDD +SNEELKRKIDRFYEGDVESLP IFEAILKRKLSGKHGDADDELMKEI 
Sbjct: 61  IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSSEEEDR 161
           QRMPGEVEDFKDEEYDSDLSG+LNE+DEEM+EDSSEEEDR
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDR 160

[Close]

BLAST of CmaCh13G010080 vs. TAIR 10
Match: AT3G18240.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 74.7 bits (182), Expect = 7.5e-14
Identity = 56/152 (36.84%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 13  CSRRVSIPPLL--QTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTTI--------- 72
           C+RR+ + P +  Q   + P L P +   + + R +SS     +G NSTT          
Sbjct: 12  CARRIILSPRITHQISPNVPFLAPIAAPAAPKFRFFSS----ESGENSTTAPESSPTDSP 71

Query: 73  ENKDSLVDDYVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 132
           E KD +V+D VSN+ELK +I++++ EG+ ++LP + EA+L+R+L  KH + DDEL+++I 
Sbjct: 72  EKKDLVVED-VSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKI- 131

Query: 133 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEE 153
           + +P + +D KDE+++SD   + + TDEE+E+
Sbjct: 132 ESLPFK-DDVKDEDFESDFE-EAHSTDEELED 155

[Close]

BLAST of CmaCh13G010080 vs. TAIR 10
Match: AT3G18240.2 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 74.7 bits (182), Expect = 7.5e-14
Identity = 56/152 (36.84%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 13  CSRRVSIPPLL--QTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTTI--------- 72
           C+RR+ + P +  Q   + P L P +   + + R +SS     +G NSTT          
Sbjct: 12  CARRIILSPRITHQISPNVPFLAPIAAPAAPKFRFFSS----ESGENSTTAPESSPTDSP 71

Query: 73  ENKDSLVDDYVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 132
           E KD +V+D VSN+ELK +I++++ EG+ ++LP + EA+L+R+L  KH + DDEL+++I 
Sbjct: 72  EKKDLVVED-VSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKI- 131

Query: 133 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEE 153
           + +P + +D KDE+++SD   + + TDEE+E+
Sbjct: 132 ESLPFK-DDVKDEDFESDFE-EAHSTDEELED 155

[Close]

BLAST of CmaCh13G010080 vs. TAIR 10
Match: AT4G21460.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-13
Identity = 59/159 (37.11%), Postives = 97/159 (61.01%), Query Frame = 0


Query: 7   GAVF---AACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTTI-- 66
           GA+F   + C+RR+ +   +    + P L P +     + R +SS     +G NSTT   
Sbjct: 3   GALFRNASLCARRIILSSRISP--NVPFLTPIAAPAPPKFRFFSS----ESGENSTTATE 62

Query: 67  -------ENKDSLVDDYVSNEELKRKIDR-FYEGDVESLPTIFEAILKRKLSGKHGDADD 126
                  + KD +V+D VSN+ELK +ID+ F EG+ ++LP + EA+L+R+L  KH + DD
Sbjct: 63  SSPTDSSDKKDLVVED-VSNKELKSRIDKSFNEGNEDALPGVIEALLQRRLVDKHAETDD 122

Query: 127 ELMKEILQRMPGEVEDFKDEEYDSDLSGDLNETDEEMEE 153
           ELM++I + +P + +D KDE+++SD   + + TDEE+E+
Sbjct: 123 ELMEKI-ESLPFK-DDVKDEDFESDFE-EAHSTDEELED 151

[Close]

BLAST of CmaCh13G010080 vs. TAIR 10
Match: AT1G73770.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 951 Blast hits to 569 proteins in 87 species: Archae - 0; Bacteria - 746; Metazoa - 33; Fungi - 46; Plants - 57; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-07
Identity = 37/99 (37.37%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 69  DDYVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEILQRMP--- 128
           ++ +S EELK++I  F  +G+ +++P +FEA++ RKLSGKH D+DDE+M +++++ P   
Sbjct: 61  EEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVM-DVVRKYPVND 120

Query: 129 -GEVEDFKDEEYDSDLSGDLNETDEEMEE----DSSEEE 159
             +V+D  D + +SD  GD +++D E ++    DSS+ +
Sbjct: 121 AHKVDDI-DSDIESDGHGDSSDSDIESDDLRDGDSSDSD 157

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BLAST of CmaCh13G010080 vs. TAIR 10
Match: AT1G73770.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-07
Identity = 37/99 (37.37%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 69  DDYVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEILQRMP--- 128
           ++ +S EELK++I  F  +G+ +++P +FEA++ RKLSGKH D+DDE+M +++++ P   
Sbjct: 61  EEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVM-DVVRKYPVND 120

Query: 129 -GEVEDFKDEEYDSDLSGDLNETDEEMEE----DSSEEE 159
             +V+D  D + +SD  GD +++D E ++    DSS+ +
Sbjct: 121 AHKVDDI-DSDIESDGHGDSSDSDIESDDLRDGDSSDSD 157

The following BLAST results are available for this feature:

BLAST of CmaCh13G010080 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G010080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KP40	1.4e-79	100.00	uncharacterized protein LOC111495236 OS=Cucurbita maxima OX=3661 GN=LOC111495236...	[more]
A0A6J1E804	1.4e-73	94.38	uncharacterized protein LOC111431572 OS=Cucurbita moschata OX=3662 GN=LOC1114315...	[more]
A0A5D3BIA4	9.8e-46	71.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEX3	9.8e-46	71.24	uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=...	[more]
A0A6J1C5J6	5.4e-44	67.07	uncharacterized protein LOC111008596 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of CmaCh13G010080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000953.1	2.8e-79	100.00	uncharacterized protein LOC111495236 [Cucurbita maxima]	[more]
XP_023519890.1	7.9e-74	94.38	uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo]	[more]
KAG7019929.1	2.3e-73	93.75	hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022924024.1	3.0e-73	94.38	uncharacterized protein LOC111431572 [Cucurbita moschata]	[more]
KAG6584340.1	5.1e-73	93.75	hypothetical protein SDJN03_20272, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh13G010080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18240.1	7.5e-14	36.84	Ribosomal protein S24/S35, mitochondrial	[more]
AT3G18240.2	7.5e-14	36.84	Ribosomal protein S24/S35, mitochondrial	[more]
AT4G21460.1	3.7e-13	37.11	Ribosomal protein S24/S35, mitochondrial	[more]
AT1G73770.1	3.0e-07	37.37	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G73770.2	3.0e-07	37.37	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G010080.1	CmaCh13G010080.1	mRNA