CmaCh13G010020 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G010020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr13: 7732187 .. 7734659 (+)
RNA-Seq Expression	CmaCh13G010020
Synteny	CmaCh13G010020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAGTTTAGTGGTGGCAGAAAATCTAACCCTTTAAAAAGAGTACAGTTCGTTTTTCTTTCATTTTCTTCTTCTTCTGACCTGGGAGATGAAAGAAAAGAAACGAGACCGAGTGAAAGAAGGACCAAAGATAAAGGGGTAAACCAATGTGATCATGACATTGTAGGTGCTTGCGATGGAAAGGAATTGGTTGGTTTGGGTTGCGGAAGTCCCTTCTTTTTTTATGGGCGATCTCGTACTTTTACCTTTTACTGGGTCATTAATACATCCATTGGAGTCTGATTCGTTCTTCCACAAAATGTTATCCCACAGATTATGACATGATTTTTTTGACATCTCAATGGAATAGGGGAGCGTCCTAACCATAGCTTTGCTGCTCAGAAGTAAAGACTGCCAACGTCTTCTGTTGCTGTTACCATATGCCTACATGGAAGATGAGTTAGTTTTCTGCTTATATGGGTCAGGCTGGTTGGTTGCCTTTCTTGACCTCCAAGGTCCGTCTTTAGTCCTTTTCAAATTTTACATTGAATTTACTGTATCTGTACCTTTAGTGAAGTAATTCGAAATACATTTTAGCCATTATCTGCTTGCTAACCACGTTATTGGATCACTCTCCTGATTTACATTTAATATATATTATGTATGTCATTGAACTACCAAACTGTCAATCAAATGGATAATATTTGATATTAATTCAAATCCAAATTCTTTCATGTCAATATACTTCAATTGTTACTCCAATTTGTATGTTGATATTATTTATAAATCATGTTTTTATTCCTTTTAATTTTTAGATATCAGTTTTTATTCGTTTTTTTTGTTTCATATCTCAAAAAGTTCTATTGATGCCAATTTTATTCAACTTCAACAATAATTGACATACATTTGTTTTTATCAAAAAAAAAAAAAAAAAAAAATTGTAGTTTACATTTTTTTTGTACTTAAAAAACTCTTAAGTTTGATGGAGTTTTGTTCGCATTTCTAAAAAACTTGGCGTTCAAAAGCGAAACCATCATTTGACGTAGTTTTTAGTTTAACAACATGAAGCATGAAGATTTGAATTTTGATGTCCTAATAACCATGACAAGTGTTTTTCCTTGTCTTGATGAGTTGATCAGTGGCTTACACATCTTGCCTTTACTGCTATATTGAGAGTTACTCCACTTATTGCTTGACGTAAAACAGACCGTGGATTTGTTTCTATCTTTTGTTGAATCTATTTCATGCTTTGATAGATAATTAGACAAGTCAATAATTTTTTTGTGTGTTTCATAATACAGTTAACCAATGTGTTAACTAATCGGTATCTTAGTTTGTTGAACTATATTCAAACTCAACACTATTTAATTACATCAAAATTATCATTTTACCTCGAAAGGTATAAGTTATATATGAACCCATTATAATTACACTCCATTTGAGAATGTAGCCCCACATGTGAAACTAGAAAATGTAGGATTCTATAATTTAATGAGTTCGCATAGAATTTGGTAGATGCACAATTCAAACCAACACATGAAGATCCAAGTAATGTCAAACGAAGTTAAATATAGGTCGCATATTACTTTTAACAGTTGGTCTTCCATTCTTGATTCGGAATCGACAGAAAAAGGCAAATCCCTTGCATTACATCATATAACTGTCATTTCCTTCAAGTCTCTCTTCTAATTCAATATTTACAACTAATATCAAGAATAGATGAAATTAATACATAAATAGATATCTTACCAATTCATCCTCGGCACCATACCCTATCGGATGAATTGAGCTATACTTGCTTTATATGTACATATCCTTGCAAGTTTATGCATACAACCTATTTAATATTACTTATTTAAACTCGAAAAGTCAGTTCATCTTTTCCTAACCAAATTCGACTATGTTAAAATTTATAATTAGCGACATCATTTCATACTTATAAAATTAAAATTACAGTACTTGCAATCGATTCATTCATTCTTGTTGTTATTATGATAGAATGTAGGATCCACAATTACGTTGTTATGAACCAATATTTATAATTCAAACTAACTGAGATTTTAATGAAAAACCACAAATTAAGTTACATAATCAAAGCAACCACATAAGATACTGATTTATTACCAAATAATGAATTAAATTGATTAAGAATCTATAAATTAACAGTTTAAACTCATTAACTCAGTAAATGATATTTAGAATTCCTTGAACCAAATGTCTCAAAGTTATGAGTTAAGAGAATATACCGAGAAAATAGGATAGATTATAGTTCATCGTTGCCATTACTATTCATCAATGCTCAATAGCCAAAAGCTAAAGGATCTGAATGATTGCTTAATAACAACAAAGGGTTCCATTAGCAAAGCTCCAAGAACCTGAAAATGGCTATATTACAAAGCAACATCGTACACTCCAACACTACAAAAAGACATTTATCTCTTCACAACATGTTCTAAAAGATCCCATCAATCTAAGCAAGATCCAACAATGA

mRNA sequence

ATGGCTCAGTTTAGTGGTGGCAGAAAATCTAACCCTTTAAAAAGAGTACAGTTCGTTTTTCTTTCATTTTCTTCTTCTTCTGACCTGGGAGATGAAAGAAAAGAAACGAGACCGAGTGAAAGAAGGACCAAAGATAAAGGGGTAAACCAATGTGATCATGACATTGTAGGTGCTTGCGATGGAAAGGAATTGGGGAGCGTCCTAACCATAGCTTTGCTGCTCAGAAGTAAAGACTGCCAACGTCTTCTGTTGCTGTTACCATATGCCTACATGGAAGATGAGTTAGTTTTCTGCTTATATGGGTCAGGCTGGTTGGTTGCCTTTCTTGACCTCCAAGGTCCGTCTTTAGTCCTTTTCAAATTTTACATTGAATTTACTGTATCTGTACCTTTAGTGAAGGTTCCATTAGCAAAGCTCCAAGAACCTGAAAATGGCTATATTACAAAGCAACATCGTACACTCCAACACTACAAAAAGACATTTATCTCTTCACAACATGTTCTAAAAGATCCCATCAATCTAAGCAAGATCCAACAATGA

Coding sequence (CDS)

ATGGCTCAGTTTAGTGGTGGCAGAAAATCTAACCCTTTAAAAAGAGTACAGTTCGTTTTTCTTTCATTTTCTTCTTCTTCTGACCTGGGAGATGAAAGAAAAGAAACGAGACCGAGTGAAAGAAGGACCAAAGATAAAGGGGTAAACCAATGTGATCATGACATTGTAGGTGCTTGCGATGGAAAGGAATTGGGGAGCGTCCTAACCATAGCTTTGCTGCTCAGAAGTAAAGACTGCCAACGTCTTCTGTTGCTGTTACCATATGCCTACATGGAAGATGAGTTAGTTTTCTGCTTATATGGGTCAGGCTGGTTGGTTGCCTTTCTTGACCTCCAAGGTCCGTCTTTAGTCCTTTTCAAATTTTACATTGAATTTACTGTATCTGTACCTTTAGTGAAGGTTCCATTAGCAAAGCTCCAAGAACCTGAAAATGGCTATATTACAAAGCAACATCGTACACTCCAACACTACAAAAAGACATTTATCTCTTCACAACATGTTCTAAAAGATCCCATCAATCTAAGCAAGATCCAACAATGA

Protein sequence

MAQFSGGRKSNPLKRVQFVFLSFSSSSDLGDERKETRPSERRTKDKGVNQCDHDIVGACDGKELGSVLTIALLLRSKDCQRLLLLLPYAYMEDELVFCLYGSGWLVAFLDLQGPSLVLFKFYIEFTVSVPLVKVPLAKLQEPENGYITKQHRTLQHYKKTFISSQHVLKDPINLSKIQQ

Homology

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BLAST of CmaCh13G010020 vs. NCBI nr
Match: KAG7019922.1 (hypothetical protein SDJN02_18889, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.1 bits (305), Expect = 4.9e-24
Identity = 70/95 (73.68%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 1  MAQFSGGRKSNPLKRVQFVFLSFSSSSDLGDERKETRPSERRTKDKGVNQCDHDIVGACD 60
          MAQFSGGRKSNPLKRV+FVFLSF  SS+LGDERKE RPS RRTKDKG             
Sbjct: 1  MAQFSGGRKSNPLKRVEFVFLSF--SSNLGDERKEKRPSGRRTKDKG------------- 60

Query: 61 GKELGSVLTIALLLRSKDCQRLLLLLPYAYMEDEL 96
              GSVLT+ALLLR KDCQRLLLLLPYAYMEDEL
Sbjct: 61 ----GSVLTMALLLRGKDCQRLLLLLPYAYMEDEL 76

The following BLAST results are available for this feature:

BLAST of CmaCh13G010020 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G010020 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G010020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019922.1	4.9e-24	73.68	hypothetical protein SDJN02_18889, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh13G010020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G010020.1	CmaCh13G010020.1	mRNA