CmaCh13G009560 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G009560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CDT1 domain-containing protein
Location	Cma_Chr13: 7501639 .. 7502932 (+)
RNA-Seq Expression	CmaCh13G009560
Synteny	CmaCh13G009560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACAAACCCCAGAACAGTTGACACCAAAGAAATCAGTGCTGCCGAGTTCGTATGTGAAAACGAGGAAACCCGCAAGCGTGGGAAGATTATGTAAAGCTGCAAAACGGGTTCACGACTTGTCTGCCATGGAAGGCGACAATGGTGCATTGAGGCTCGGCGTGGCTGAAAAGAAAGCTTTTGTTGATGTGAAGAATGTTGTTCGTGTTGTCTACAACATTTTCAAGTCTGTTAATTGCGCTTCGATTAACAAGGAAGAGCTCGTGCACAAGATTATGATGAGTAGTCCTGATATTACTGAGAGAAGTATGTATGATTTTGTTAATTTGTTTTGAAATTTTGCTTTACTTGTACTTGTTTCCTTGCAGGTGAAGTGGAAGAGCAAATTGAGCAGCTCCATGAGTTGGTTCCCAATTGGATCTCCAAGAACTTGACACCTAGTGGGGATGTTACTTTTAGGTCAGTCATTCCGAGTATCTTTTATTATCTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCGAGAGAACTCGGTTGGTACGAAGCTTTTTGAATAAACATAAAAACGAAGTACTTTATGATCAGAGTCGACAATATCATATAATTATCTAGGTTTGTTGTTGTTAACATGTTACTAGAGTCATGTCCTTATCTAACTTAGTCATATCAATAGAATTTTCAAGTGCCTATAGAAGGAGTTGAGTTTCAACTAAGGGGAGACTGTTCGAGGGCTTTAGAGAATCGAGAATCAGGTCTTAGGGAAGGCTCTATATTGTATTTTATTTGAAGGGAGAATGGTTGGAGTCCCACTTTGACAAATTAAGGGAAAAATAGGAGTAAACAAGTAAAGAAACTCGTACGAATTCATTTAAGGAAACCAAAAACGTCTTAACACAAATGTCTGATAGAACATTTTTTTTTTCTTTTTGTTCATCGAAAATAAGGGGTTTGAGTCATCTTTTAAGTCAAAACCTACATTGAACCCATATGTAAACTGAATGTGTGACAAACCGATAACCAAAACGACCAAAACCAAATAAAATAGCCAAAAGAATGACGAAATCTTACTCAAAACCGAACCCACGAACGATTTTGAACTTAGAAAACTTAAACGATGAATGAAGGAGTATATCTTTAAGGAGACATTGGATGACTCCCTCAATGTCTATATAACTAGATGTGACCCCATGAATGCACTTCTTTTAATGCTAACAACACTGTCACTCGGTGCAGCATTGACCCGATGGAAGACTTGGAACCGGTAG

mRNA sequence

ATGACACAAACCCCAGAACAGTTGACACCAAAGAAATCAGTGCTGCCGAGTTCGTATGTGAAAACGAGGAAACCCGCAAGCGTGGGAAGATTATGTAAAGCTGCAAAACGGGTTCACGACTTGTCTGCCATGGAAGGCGACAATGGTGCATTGAGGCTCGGCGTGGCTGAAAAGAAAGCTTTTGTTGATGTGAAGAATGTTGTTCGTGTTGTCTACAACATTTTCAAGTCTGTTAATTGCGCTTCGATTAACAAGGAAGAGCTCGTGCACAAGATTATGATGAGTAGTCCTGATATTACTGAGAGAAGTGAAGTGGAAGAGCAAATTGAGCAGCTCCATGAGTTGGTTCCCAATTGGATCTCCAAGAACTTGACACCTAGTGGGGATGTTACTTTTAGGTCAGTCATTCCGACATTGACCCGATGGAAGACTTGGAACCGGTAG

Coding sequence (CDS)

ATGACACAAACCCCAGAACAGTTGACACCAAAGAAATCAGTGCTGCCGAGTTCGTATGTGAAAACGAGGAAACCCGCAAGCGTGGGAAGATTATGTAAAGCTGCAAAACGGGTTCACGACTTGTCTGCCATGGAAGGCGACAATGGTGCATTGAGGCTCGGCGTGGCTGAAAAGAAAGCTTTTGTTGATGTGAAGAATGTTGTTCGTGTTGTCTACAACATTTTCAAGTCTGTTAATTGCGCTTCGATTAACAAGGAAGAGCTCGTGCACAAGATTATGATGAGTAGTCCTGATATTACTGAGAGAAGTGAAGTGGAAGAGCAAATTGAGCAGCTCCATGAGTTGGTTCCCAATTGGATCTCCAAGAACTTGACACCTAGTGGGGATGTTACTTTTAGGTCAGTCATTCCGACATTGACCCGATGGAAGACTTGGAACCGGTAG

Protein sequence

MTQTPEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKAFVDVKNVVRVVYNIFKSVNCASINKEELVHKIMMSSPDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRSVIPTLTRWKTWNR

Homology

[Close]

BLAST of CmaCh13G009560 vs. ExPASy Swiss-Prot
Match: Q9SJW9 (CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDT1A PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 5   PEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKAFVDV 64
           P    P++ V     + +  P  +    K  +R     A+E  N A+ L    +K    +
Sbjct: 420 PIDQVPEEDVSSDDEILSILPDKLRHAIKEQER----KAIEDQNPAISLAKRRRKMIACL 479

Query: 65  KNVVRVVYNIFKSVNCASINKEELVHKIMMSSPDITERSEVEEQIEQLHELVPNWISKNL 124
             +  V++ + +S+    I KEELVHKI+    DIT+R EVEEQ+  L E+VP W+S+  
Sbjct: 480 PKLFNVIHYLIQSIRRWVITKEELVHKIIAGHSDITDRKEVEEQLILLQEIVPEWMSEKK 539

Query: 125 TPSGDV 131
           + SGDV
Sbjct: 540 SSSGDV 541

[Close]

BLAST of CmaCh13G009560 vs. ExPASy Swiss-Prot
Match: Q9M1S9 (CDT1-like protein b OS=Arabidopsis thaliana OX=3702 GN=CDT1B PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 63  DVKNVVRVVYNIFKSVNCASINKEELVHKIMMSSPDITERSEVEEQIEQLHELVPNWISK 122
           ++  +V +++ +F S N   I KEEL++KI+ +  +IT+R EVEEQ+  + +LVP+WIS+
Sbjct: 390 NLPQLVNLIHRVFHSTNRTVITKEELLYKIIANQINITDRREVEEQLSLMLQLVPDWISE 449

Query: 123 NLTPSGDVTFR 134
               SGD+  R
Sbjct: 450 TKASSGDLLVR 460

[Close]

BLAST of CmaCh13G009560 vs. ExPASy TrEMBL
Match: A0A5D3BIY5 (CDT1-like protein a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002810 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.8e-37
Identity = 96/158 (60.76%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 1   MTQTPEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--- 60
           MTQTP QLTPK+S+LPSS VKTRKPASVG +CK AKR  + S MEGDNG   LGV +   
Sbjct: 309 MTQTPVQLTPKRSMLPSSEVKTRKPASVGSVCKPAKRFLNFSGMEGDNGKSSLGVDDLQI 368

Query: 61  --KKAFVD---------------------VKNVVRVVYNIFKSVNCASINKEELVHKIMM 120
             KK F+D                     +  +V VVYNIFKSVNC+SI KEELVHKI+M
Sbjct: 369 PGKKNFLDEHFEKKNYTSKEVISQESSSCLPELVCVVYNIFKSVNCSSITKEELVHKIIM 428

Query: 121 SSPDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTF 133
           +  DITER EVEE+IEQL +LVPNWISK LT SGDVTF
Sbjct: 429 NCLDITERREVEERIEQLEKLVPNWISKKLTISGDVTF 466

[Close]

BLAST of CmaCh13G009560 vs. ExPASy TrEMBL
Match: A0A1S3ATS0 (CDT1-like protein a, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482615 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.8e-37
Identity = 96/158 (60.76%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 1   MTQTPEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--- 60
           MTQTP QLTPK+S+LPSS VKTRKPASVG +CK AKR  + S MEGDNG   LGV +   
Sbjct: 309 MTQTPVQLTPKRSMLPSSEVKTRKPASVGSVCKPAKRFLNFSGMEGDNGKSSLGVDDLQI 368

Query: 61  --KKAFVD---------------------VKNVVRVVYNIFKSVNCASINKEELVHKIMM 120
             KK F+D                     +  +V VVYNIFKSVNC+SI KEELVHKI+M
Sbjct: 369 PGKKNFLDEHFEKKNYTSKEVISQESSSCLPELVCVVYNIFKSVNCSSITKEELVHKIIM 428

Query: 121 SSPDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTF 133
           +  DITER EVEE+IEQL +LVPNWISK LT SGDVTF
Sbjct: 429 NCLDITERREVEERIEQLEKLVPNWISKKLTISGDVTF 466

[Close]

BLAST of CmaCh13G009560 vs. ExPASy TrEMBL
Match: A0A1S3AT80 (CDT1-like protein a, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482615 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.8e-37
Identity = 96/158 (60.76%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 1   MTQTPEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--- 60
           MTQTP QLTPK+S+LPSS VKTRKPASVG +CK AKR  + S MEGDNG   LGV +   
Sbjct: 230 MTQTPVQLTPKRSMLPSSEVKTRKPASVGSVCKPAKRFLNFSGMEGDNGKSSLGVDDLQI 289

Query: 61  --KKAFVD---------------------VKNVVRVVYNIFKSVNCASINKEELVHKIMM 120
             KK F+D                     +  +V VVYNIFKSVNC+SI KEELVHKI+M
Sbjct: 290 PGKKNFLDEHFEKKNYTSKEVISQESSSCLPELVCVVYNIFKSVNCSSITKEELVHKIIM 349

Query: 121 SSPDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTF 133
           +  DITER EVEE+IEQL +LVPNWISK LT SGDVTF
Sbjct: 350 NCLDITERREVEERIEQLEKLVPNWISKKLTISGDVTF 387

[Close]

BLAST of CmaCh13G009560 vs. ExPASy TrEMBL
Match: A0A0A0LQM9 (CDT1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G043230 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.4e-35
Identity = 95/161 (59.01%), Postives = 107/161 (66.46%), Query Frame = 0


Query: 1   MTQTPEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGV----- 60
           MTQTP QLTPK+S+LPSS VKTRKPASVG +CK AKR  + S ME DNG   LGV     
Sbjct: 295 MTQTPVQLTPKRSMLPSSEVKTRKPASVGSVCKPAKRFLNFSGMESDNGKSSLGVDGLQC 354

Query: 61  ---AEKKAFVD---------------------VKNVVRVVYNIFKSVNCASINKEELVHK 120
                KK F+D                     +  +V VVYNIFKSVNC+SI KEELVHK
Sbjct: 355 YEIPGKKNFLDEHIQKKNYTSKEVISQESSSCLPELVCVVYNIFKSVNCSSITKEELVHK 414

Query: 121 IMMSSPDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTF 133
           I+M+  DITER EVEE+IEQL +LVPNWISK LT SGDVTF
Sbjct: 415 IIMNCLDITERREVEERIEQLEKLVPNWISKKLTISGDVTF 455

[Close]

BLAST of CmaCh13G009560 vs. ExPASy TrEMBL
Match: A0A6J1GR86 (CDT1-like protein a, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456741 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.6e-34
Identity = 91/159 (57.23%), Postives = 105/159 (66.04%), Query Frame = 0


Query: 1   MTQTPEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGV----- 60
           +TQTP Q TPK+S+LPSS VK RK ASVG LCK AKR  + S MEGDNG L   V     
Sbjct: 305 ITQTPVQSTPKRSMLPSSDVKMRKTASVGSLCKPAKRFLNFSGMEGDNGPLSFSVDDLQC 364

Query: 61  ---AEKKAF-------------------VDVKNVVRVVYNIFKSVNCASINKEELVHKIM 120
               EK+ F                     +  +VRV+YN+FKSVNCASI KEELVHKI+
Sbjct: 365 YDIPEKRDFHYERYRKDSSSGRVTCEESSCLPELVRVIYNVFKSVNCASITKEELVHKII 424

Query: 121 MSSPDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTF 133
           M+S DITER EVEE+IEQL + VP+WISK LTPSGDVTF
Sbjct: 425 MNSLDITERREVEERIEQLEKSVPSWISKKLTPSGDVTF 463

[Close]

BLAST of CmaCh13G009560 vs. NCBI nr
Match: KAG6584288.1 (CDT1-like protein b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244.2 bits (622), Expect = 7.0e-61
Identity = 126/132 (95.45%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MTQTPEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKA 60
           MTQTPEQLTPKKS+LPSSYVKTRKPA+VGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKA
Sbjct: 1   MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKA 60

Query: 61  FVDVKNVVRVVYNIFKSVNCASINKEELVHKIMMSSPDITERSEVEEQIEQLHELVPNWI 120
            VDVKNVVRVVYNIFKSVNCASINKEELVH+IMMSS DI ERSEVEEQIEQLHELVPNWI
Sbjct: 61  SVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDINERSEVEEQIEQLHELVPNWI 120

Query: 121 SKNLTPSGDVTF 133
           SKNLTPSGDVTF
Sbjct: 121 SKNLTPSGDVTF 132

[Close]

BLAST of CmaCh13G009560 vs. NCBI nr
Match: KAG7019881.1 (CDT1-like protein a, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.3 bits (604), Expect = 8.6e-59
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MTQTPEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKA 60
           MTQTPEQLTPKKS+LPSSYVKTRKPA+VGR CKAAKRVHDLSAMEGDNGALR+GVAEKKA
Sbjct: 1   MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAEKKA 60

Query: 61  FVDVKNVVRVVYNIFKSVNCASINKEELVHKIMMSSPDITERSEVEEQIEQLHELVPNWI 120
            VDVKNVVRVVYNIFKSVNCASINKEELVH+IMMSS DITERSEVEEQIEQLHELVPNWI
Sbjct: 61  SVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWI 120

Query: 121 SKNLTPSGD 130
           SKNLTPSGD
Sbjct: 121 SKNLTPSGD 129

[Close]

BLAST of CmaCh13G009560 vs. NCBI nr
Match: XP_038893531.1 (CDT1-like protein a, chloroplastic [Benincasa hispida])

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-37
Identity = 97/162 (59.88%), Postives = 109/162 (67.28%), Query Frame = 0


Query: 1   MTQTPEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGV----- 60
           MTQTP QLTPK+S+LPSS VKTRKPASVG +CK AKR  + S MEGDNG   L V     
Sbjct: 303 MTQTPVQLTPKRSMLPSSDVKTRKPASVGSVCKPAKRFLNFSGMEGDNGESSLDVDDLQC 362

Query: 61  ---AEKKAFVD----------------------VKNVVRVVYNIFKSVNCASINKEELVH 120
               EKK F+D                      +  +VRVVYNIFKSVNC+SI KEELVH
Sbjct: 363 YEIPEKKNFLDEHFQKKSNTSSGEVICQESSSCLPEIVRVVYNIFKSVNCSSITKEELVH 422

Query: 121 KIMMSSPDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTF 133
           KI+M+  DITER EVE+QIEQL +LVPNWISK  TPSGDVTF
Sbjct: 423 KIIMNCLDITERREVEQQIEQLEKLVPNWISKKSTPSGDVTF 464

[Close]

BLAST of CmaCh13G009560 vs. NCBI nr
Match: XP_008437112.1 (PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 96/158 (60.76%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 1   MTQTPEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--- 60
           MTQTP QLTPK+S+LPSS VKTRKPASVG +CK AKR  + S MEGDNG   LGV +   
Sbjct: 230 MTQTPVQLTPKRSMLPSSEVKTRKPASVGSVCKPAKRFLNFSGMEGDNGKSSLGVDDLQI 289

Query: 61  --KKAFVD---------------------VKNVVRVVYNIFKSVNCASINKEELVHKIMM 120
             KK F+D                     +  +V VVYNIFKSVNC+SI KEELVHKI+M
Sbjct: 290 PGKKNFLDEHFEKKNYTSKEVISQESSSCLPELVCVVYNIFKSVNCSSITKEELVHKIIM 349

Query: 121 SSPDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTF 133
           +  DITER EVEE+IEQL +LVPNWISK LT SGDVTF
Sbjct: 350 NCLDITERREVEERIEQLEKLVPNWISKKLTISGDVTF 387

[Close]

BLAST of CmaCh13G009560 vs. NCBI nr
Match: XP_008437096.1 (PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis melo] >TYJ99077.1 CDT1-like protein a [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 96/158 (60.76%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 1   MTQTPEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--- 60
           MTQTP QLTPK+S+LPSS VKTRKPASVG +CK AKR  + S MEGDNG   LGV +   
Sbjct: 309 MTQTPVQLTPKRSMLPSSEVKTRKPASVGSVCKPAKRFLNFSGMEGDNGKSSLGVDDLQI 368

Query: 61  --KKAFVD---------------------VKNVVRVVYNIFKSVNCASINKEELVHKIMM 120
             KK F+D                     +  +V VVYNIFKSVNC+SI KEELVHKI+M
Sbjct: 369 PGKKNFLDEHFEKKNYTSKEVISQESSSCLPELVCVVYNIFKSVNCSSITKEELVHKIIM 428

Query: 121 SSPDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTF 133
           +  DITER EVEE+IEQL +LVPNWISK LT SGDVTF
Sbjct: 429 NCLDITERREVEERIEQLEKLVPNWISKKLTISGDVTF 466

[Close]

BLAST of CmaCh13G009560 vs. TAIR 10
Match: AT2G31270.1 (homolog of yeast CDT1 A )

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 5   PEQLTPKKSVLPSSYVKTRKPASVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKAFVDV 64
           P    P++ V     + +  P  +    K  +R     A+E  N A+ L    +K    +
Sbjct: 420 PIDQVPEEDVSSDDEILSILPDKLRHAIKEQER----KAIEDQNPAISLAKRRRKMIACL 479

Query: 65  KNVVRVVYNIFKSVNCASINKEELVHKIMMSSPDITERSEVEEQIEQLHELVPNWISKNL 124
             +  V++ + +S+    I KEELVHKI+    DIT+R EVEEQ+  L E+VP W+S+  
Sbjct: 480 PKLFNVIHYLIQSIRRWVITKEELVHKIIAGHSDITDRKEVEEQLILLQEIVPEWMSEKK 539

Query: 125 TPSGDV 131
           + SGDV
Sbjct: 540 SSSGDV 541

[Close]

BLAST of CmaCh13G009560 vs. TAIR 10
Match: AT3G54710.1 (homolog of yeast CDT1 B homolog of yeast CDT1 B )

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-09
Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 63  DVKNVVRVVYNIFKSVNCASINKEELVHKIMMSSPDITERSEVEEQIEQLHELVPNWISK 122
           ++  +V +++ +F S N   I KEEL++KI+ +  +IT+R EVEEQ+  + +LVP+WIS+
Sbjct: 390 NLPQLVNLIHRVFHSTNRTVITKEELLYKIIANQINITDRREVEEQLSLMLQLVPDWISE 449

Query: 123 NLTPSGDVTFR 134
               SGD+  R
Sbjct: 450 TKASSGDLLVR 460

The following BLAST results are available for this feature:

BLAST of CmaCh13G009560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJW9	2.0e-10	33.33	CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDT1A PE=1...	[more]
Q9M1S9	1.4e-08	40.85	CDT1-like protein b OS=Arabidopsis thaliana OX=3702 GN=CDT1B PE=1 SV=1	[more]

BLAST of CmaCh13G009560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIY5	5.8e-37	60.76	CDT1-like protein a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G...	[more]
A0A1S3ATS0	5.8e-37	60.76	CDT1-like protein a, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A1S3AT80	5.8e-37	60.76	CDT1-like protein a, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LQM9	1.4e-35	59.01	CDT1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G043230 PE=3 S...	[more]
A0A6J1GR86	4.6e-34	57.23	CDT1-like protein a, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456741...	[more]

BLAST of CmaCh13G009560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584288.1	7.0e-61	95.45	CDT1-like protein b, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7019881.1	8.6e-59	94.57	CDT1-like protein a, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038893531.1	1.9e-37	59.88	CDT1-like protein a, chloroplastic [Benincasa hispida]	[more]
XP_008437112.1	1.2e-36	60.76	PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis melo]	[more]
XP_008437096.1	1.2e-36	60.76	PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis melo] >TYJ9907...	[more]

BLAST of CmaCh13G009560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31270.1	1.4e-11	33.33	homolog of yeast CDT1 A	[more]
AT3G54710.1	1.0e-09	40.85	homolog of yeast CDT1 B homolog of yeast CDT1 B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032054	DNA replication factor Cdt1, C-terminal	PFAM	PF16679	CDT1_C	coord: 58..121 e-value: 2.2E-10 score: 40.8
IPR038090	DNA replication factor Cdt1, C-terminal WH domain superfamily	GENE3D	1.10.10.1420		coord: 55..135 e-value: 7.3E-16 score: 60.1
None	No IPR available	PANTHER	PTHR28637:SF13	EXPRESSED PROTEIN	coord: 63..133
None	No IPR available	PANTHER	PTHR28637	DNA REPLICATION FACTOR CDT1	coord: 63..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G009560.1	CmaCh13G009560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0050794	regulation of cellular process
molecular_function	GO:0005488	binding