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CmaCh13G009490 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTGATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTGGAAGCTCTTGAAACCTACTCGTTTATGTGCCACTTTGGAATTCATGGTAACAATTTCACATTTCCTCTCCTCCTCAAGCCTTGCGCAAATCTTGCTTCGATCGGTGATGGCACGATGCTCCACGCTCACCTCTTCCGTGATGGGTTCGAATCAGACATGTTTGTTCAAACCTCGCTTGTCGACATGTATTCCAGAGTGCTCTGA ATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTGATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTGGAAGCTCTTGAAACCTACTCGTTTATGTGCCACTTTGGAATTCATGGTAACAATTTCACATTTCCTCTCCTCCTCAAGCCTTGCGCAAATCTTGCTTCGATCGGTGATGGCACGATGCTCCACGCTCACCTCTTCCGTGATGGGTTCGAATCAGACATGTTTGTTCAAACCTCGCTTGTCGACATGTATTCCAGAGTGCTCTGA ATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTGATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTGGAAGCTCTTGAAACCTACTCGTTTATGTGCCACTTTGGAATTCATGGTAACAATTTCACATTTCCTCTCCTCCTCAAGCCTTGCGCAAATCTTGCTTCGATCGGTGATGGCACGATGCTCCACGCTCACCTCTTCCGTGATGGGTTCGAATCAGACATGTTTGTTCAAACCTCGCTTGTCGACATGTATTCCAGAGTGCTCTGA MQIHRFSPSSSLILYLWNLMIRSSVNGGLEALETYSFMCHFGIHGNNFTFPLLLKPCANLASIGDGTMLHAHLFRDGFESDMFVQTSLVDMYSRVL Homology
BLAST of CmaCh13G009490 vs. ExPASy Swiss-Prot
Match: P0C8Q2 (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E1 PE=2 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.4e-12 Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of CmaCh13G009490 vs. ExPASy Swiss-Prot
Match: Q9SS60 (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H23 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.0e-11 Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of CmaCh13G009490 vs. ExPASy Swiss-Prot
Match: Q9C6T2 (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.0e-11 Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 0
BLAST of CmaCh13G009490 vs. ExPASy Swiss-Prot
Match: Q9LUS3 (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 4.5e-11 Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 0
BLAST of CmaCh13G009490 vs. ExPASy Swiss-Prot
Match: O49619 (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H27 PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10 Identity = 30/83 (36.14%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of CmaCh13G009490 vs. ExPASy TrEMBL
Match: A0A6J1C6R4 (pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charantia OX=3673 GN=LOC111008767 PE=4 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 1.2e-35 Identity = 81/99 (81.82%), Postives = 84/99 (84.85%), Query Frame = 0
BLAST of CmaCh13G009490 vs. ExPASy TrEMBL
Match: A0A0A0LT91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34 Identity = 80/100 (80.00%), Postives = 85/100 (85.00%), Query Frame = 0
BLAST of CmaCh13G009490 vs. ExPASy TrEMBL
Match: A0A5D3BIG9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002870 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 6.7e-34 Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 0
BLAST of CmaCh13G009490 vs. ExPASy TrEMBL
Match: A0A1S3BDP0 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488899 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 6.7e-34 Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 0
BLAST of CmaCh13G009490 vs. ExPASy TrEMBL
Match: A0A1S3TN93 (pentatricopeptide repeat-containing protein At3g12770 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757146 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 9.1e-23 Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 0
BLAST of CmaCh13G009490 vs. NCBI nr
Match: XP_022137264.1 (pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia]) HSP 1 Score: 158.7 bits (400), Expect = 2.5e-35 Identity = 81/99 (81.82%), Postives = 84/99 (84.85%), Query Frame = 0
BLAST of CmaCh13G009490 vs. NCBI nr
Match: XP_004137641.1 (pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus]) HSP 1 Score: 155.2 bits (391), Expect = 2.8e-34 Identity = 80/100 (80.00%), Postives = 85/100 (85.00%), Query Frame = 0
BLAST of CmaCh13G009490 vs. NCBI nr
Match: TYJ99083.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33 Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 0
BLAST of CmaCh13G009490 vs. NCBI nr
Match: XP_008446053.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis melo]) HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33 Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 0
BLAST of CmaCh13G009490 vs. NCBI nr
Match: XP_038893873.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 150.6 bits (379), Expect = 6.9e-33 Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = 0
BLAST of CmaCh13G009490 vs. TAIR 10
Match: AT4G19191.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13 Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of CmaCh13G009490 vs. TAIR 10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12 Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 0
BLAST of CmaCh13G009490 vs. TAIR 10
Match: AT3G03580.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12 Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of CmaCh13G009490 vs. TAIR 10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein ) HSP 1 Score: 68.6 bits (166), Expect = 3.2e-12 Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 0
BLAST of CmaCh13G009490 vs. TAIR 10
Match: AT4G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 67.0 bits (162), Expect = 9.4e-12 Identity = 30/83 (36.14%), Postives = 54/83 (65.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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