CmaCh13G009490 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G009490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr13: 7448055 .. 7448345 (-)
RNA-Seq Expression	CmaCh13G009490
Synteny	CmaCh13G009490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTGATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTGGAAGCTCTTGAAACCTACTCGTTTATGTGCCACTTTGGAATTCATGGTAACAATTTCACATTTCCTCTCCTCCTCAAGCCTTGCGCAAATCTTGCTTCGATCGGTGATGGCACGATGCTCCACGCTCACCTCTTCCGTGATGGGTTCGAATCAGACATGTTTGTTCAAACCTCGCTTGTCGACATGTATTCCAGAGTGCTCTGA

mRNA sequence

ATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTGATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTGGAAGCTCTTGAAACCTACTCGTTTATGTGCCACTTTGGAATTCATGGTAACAATTTCACATTTCCTCTCCTCCTCAAGCCTTGCGCAAATCTTGCTTCGATCGGTGATGGCACGATGCTCCACGCTCACCTCTTCCGTGATGGGTTCGAATCAGACATGTTTGTTCAAACCTCGCTTGTCGACATGTATTCCAGAGTGCTCTGA

Coding sequence (CDS)

ATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTGATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTGGAAGCTCTTGAAACCTACTCGTTTATGTGCCACTTTGGAATTCATGGTAACAATTTCACATTTCCTCTCCTCCTCAAGCCTTGCGCAAATCTTGCTTCGATCGGTGATGGCACGATGCTCCACGCTCACCTCTTCCGTGATGGGTTCGAATCAGACATGTTTGTTCAAACCTCGCTTGTCGACATGTATTCCAGAGTGCTCTGA

Protein sequence

MQIHRFSPSSSLILYLWNLMIRSSVNGGLEALETYSFMCHFGIHGNNFTFPLLLKPCANLASIGDGTMLHAHLFRDGFESDMFVQTSLVDMYSRVL

Homology

[Close]

BLAST of CmaCh13G009490 vs. ExPASy Swiss-Prot
Match: P0C8Q2 (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-12
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 2  QIHRFSPSSSLILYLWNLMIRSSVNGG--LEALETYSFMCHFGIHGNNFTFPLLLKPCAN 61
          +++R S  SS  +  WNL IR +VN    +E+L  +  M   G   NNFTFP + K CA 
Sbjct: 7  RLYRISGLSS--VNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACAR 66

Query: 62 LASIGDGTMLHAHLFRDGFESDMFVQTSLVDMY 93
          LA +G   M+HAHL +  F SD+FV T+ VDM+
Sbjct: 67 LADVGCCEMVHAHLIKSPFWSDVFVGTATVDMF 97

[Close]

BLAST of CmaCh13G009490 vs. ExPASy Swiss-Prot
Match: Q9SS60 (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-11
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 5   RFSPSSSLILYLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLLKPCANLAS 64
           R SP+ +  +YLWN +IR+    GL  EALE Y  +    +  + +TFP ++K CA L  
Sbjct: 64  RVSPAKN--VYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFD 123

Query: 65  IGDGTMLHAHLFRDGFESDMFVQTSLVDMYSRV 96
              G +++  +   GFESD+FV  +LVDMYSR+
Sbjct: 124 AEMGDLVYEQILDMGFESDLFVGNALVDMYSRM 154

[Close]

BLAST of CmaCh13G009490 vs. ExPASy Swiss-Prot
Match: Q9C6T2 (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-11
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 17  WNLMIRSSVN--GGLEALETYSFMCHFGIHGNNFTFPLLLKPCANLASIGDGTMLHAHLF 76
           +N MIR  VN     EAL  Y+ M   G   +NFT+P LLK C  L SI +G  +H  +F
Sbjct: 100 FNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVF 159

Query: 77  RDGFESDMFVQTSLVDMYSR 95
           + G E+D+FVQ SL++MY R
Sbjct: 160 KLGLEADVFVQNSLINMYGR 179

[Close]

BLAST of CmaCh13G009490 vs. ExPASy Swiss-Prot
Match: Q9LUS3 (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.5e-11
Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 17  WNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLLKPCANLASIGDGTMLHAHLF 76
           W+LMIR+  +     +AL+ Y  M + G+    +T+P +LK CA L +I DG ++H+H+ 
Sbjct: 71  WDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVN 130

Query: 77  RDGFESDMFVQTSLVDMYSR 95
              F +DM+V T+LVD Y++
Sbjct: 131 CSDFATDMYVCTALVDFYAK 150

[Close]

BLAST of CmaCh13G009490 vs. ExPASy Swiss-Prot
Match: O49619 (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H27 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10
Identity = 30/83 (36.14%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 15  YLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLLKPCANLASIGDGTMLHAH 74
           +LWN+MI+   + GL  EA++ YS M   G+  + FT+P ++K  A ++S+ +G  +HA 
Sbjct: 96  FLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAM 155

Query: 75  LFRDGFESDMFVQTSLVDMYSRV 96
           + + GF SD++V  SL+ +Y ++
Sbjct: 156 VIKLGFVSDVYVCNSLISLYMKL 178

[Close]

BLAST of CmaCh13G009490 vs. ExPASy TrEMBL
Match: A0A6J1C6R4 (pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charantia OX=3673 GN=LOC111008767 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.2e-35
Identity = 81/99 (81.82%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1  MQIHRFSPSSSLI---LYLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLLK 60
          MQ HRFSPSS  I   LYLWNLMIRSSVNGG   E LETYSFM H GIHGNNFTFPLLLK
Sbjct: 1  MQAHRFSPSSGFIKRPLYLWNLMIRSSVNGGFFAETLETYSFMRHSGIHGNNFTFPLLLK 60

Query: 61 PCANLASIGDGTMLHAHLFRDGFESDMFVQTSLVDMYSR 95
           CANLASIGDGTMLHAHL R GFE+D+FVQTSLVDMYS+
Sbjct: 61 ACANLASIGDGTMLHAHLIRVGFETDIFVQTSLVDMYSK 99

[Close]

BLAST of CmaCh13G009490 vs. ExPASy TrEMBL
Match: A0A0A0LT91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 80/100 (80.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 1   MQIHRFSPSSSLI----LYLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLL 60
           MQIHRFS SS+LI    LYLWNL IRSSVNGG   ++LETYSFM H GIHGNNFTFPLLL
Sbjct: 1   MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQSLETYSFMRHSGIHGNNFTFPLLL 60

Query: 61  KPCANLASIGDGTMLHAHLFRDGFESDMFVQTSLVDMYSR 95
           K CANLASIGDGTMLHAHL   GFESD+FVQTSLVDMYS+
Sbjct: 61  KACANLASIGDGTMLHAHLIHVGFESDVFVQTSLVDMYSK 100

[Close]

BLAST of CmaCh13G009490 vs. ExPASy TrEMBL
Match: A0A5D3BIG9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002870 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.7e-34
Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MQIHRFSPSSSLI----LYLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLL 60
           MQIHRFS SS+LI    LYLWNL IRSSVNGG   + LETYSFM   GIHGNNFTFPLLL
Sbjct: 1   MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLL 60

Query: 61  KPCANLASIGDGTMLHAHLFRDGFESDMFVQTSLVDMYSRV 96
           K CANLASIGDGTMLHAHL   GFESD+FVQTSLVDMYS++
Sbjct: 61  KACANLASIGDGTMLHAHLIHVGFESDVFVQTSLVDMYSKI 101

[Close]

BLAST of CmaCh13G009490 vs. ExPASy TrEMBL
Match: A0A1S3BDP0 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488899 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.7e-34
Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MQIHRFSPSSSLI----LYLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLL 60
           MQIHRFS SS+LI    LYLWNL IRSSVNGG   + LETYSFM   GIHGNNFTFPLLL
Sbjct: 1   MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLL 60

Query: 61  KPCANLASIGDGTMLHAHLFRDGFESDMFVQTSLVDMYSRV 96
           K CANLASIGDGTMLHAHL   GFESD+FVQTSLVDMYS++
Sbjct: 61  KACANLASIGDGTMLHAHLIHVGFESDVFVQTSLVDMYSKI 101

[Close]

BLAST of CmaCh13G009490 vs. ExPASy TrEMBL
Match: A0A1S3TN93 (pentatricopeptide repeat-containing protein At3g12770 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757146 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.1e-23
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 14 LYLWNLMIRSSVNGG--LEALETYSFMCHFGIHGNNFTFPLLLKPCANLASIGDGTMLHA 73
          LYLWNLMIR S N G  ++ L  YS M H G+HGNN T+PLLLK CANLASI  GT+LH+
Sbjct: 15 LYLWNLMIRDSTNNGFFIQTLNIYSSMAHSGVHGNNLTYPLLLKACANLASIQHGTVLHS 74

Query: 74 HLFRDGFESDMFVQTSLVDMYSR 95
          HL + GF++D FVQT+LVDMYS+
Sbjct: 75 HLLKLGFQADAFVQTALVDMYSK 97

[Close]

BLAST of CmaCh13G009490 vs. NCBI nr
Match: XP_022137264.1 (pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 2.5e-35
Identity = 81/99 (81.82%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1  MQIHRFSPSSSLI---LYLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLLK 60
          MQ HRFSPSS  I   LYLWNLMIRSSVNGG   E LETYSFM H GIHGNNFTFPLLLK
Sbjct: 1  MQAHRFSPSSGFIKRPLYLWNLMIRSSVNGGFFAETLETYSFMRHSGIHGNNFTFPLLLK 60

Query: 61 PCANLASIGDGTMLHAHLFRDGFESDMFVQTSLVDMYSR 95
           CANLASIGDGTMLHAHL R GFE+D+FVQTSLVDMYS+
Sbjct: 61 ACANLASIGDGTMLHAHLIRVGFETDIFVQTSLVDMYSK 99

[Close]

BLAST of CmaCh13G009490 vs. NCBI nr
Match: XP_004137641.1 (pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 2.8e-34
Identity = 80/100 (80.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 1   MQIHRFSPSSSLI----LYLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLL 60
           MQIHRFS SS+LI    LYLWNL IRSSVNGG   ++LETYSFM H GIHGNNFTFPLLL
Sbjct: 1   MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQSLETYSFMRHSGIHGNNFTFPLLL 60

Query: 61  KPCANLASIGDGTMLHAHLFRDGFESDMFVQTSLVDMYSR 95
           K CANLASIGDGTMLHAHL   GFESD+FVQTSLVDMYS+
Sbjct: 61  KACANLASIGDGTMLHAHLIHVGFESDVFVQTSLVDMYSK 100

[Close]

BLAST of CmaCh13G009490 vs. NCBI nr
Match: TYJ99083.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MQIHRFSPSSSLI----LYLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLL 60
           MQIHRFS SS+LI    LYLWNL IRSSVNGG   + LETYSFM   GIHGNNFTFPLLL
Sbjct: 1   MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLL 60

Query: 61  KPCANLASIGDGTMLHAHLFRDGFESDMFVQTSLVDMYSRV 96
           K CANLASIGDGTMLHAHL   GFESD+FVQTSLVDMYS++
Sbjct: 61  KACANLASIGDGTMLHAHLIHVGFESDVFVQTSLVDMYSKI 101

[Close]

BLAST of CmaCh13G009490 vs. NCBI nr
Match: XP_008446053.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MQIHRFSPSSSLI----LYLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLL 60
           MQIHRFS SS+LI    LYLWNL IRSSVNGG   + LETYSFM   GIHGNNFTFPLLL
Sbjct: 1   MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLL 60

Query: 61  KPCANLASIGDGTMLHAHLFRDGFESDMFVQTSLVDMYSRV 96
           K CANLASIGDGTMLHAHL   GFESD+FVQTSLVDMYS++
Sbjct: 61  KACANLASIGDGTMLHAHLIHVGFESDVFVQTSLVDMYSKI 101

[Close]

BLAST of CmaCh13G009490 vs. NCBI nr
Match: XP_038893873.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 6.9e-33
Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MQIHRFSPSSSLI----LYLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLL 60
           MQIHRFSPSS+LI    LYLWNL IR SVNGG   E LETYSFM H GIHGNNFTFPLLL
Sbjct: 1   MQIHRFSPSSTLIIKRPLYLWNLTIRISVNGGFFTEXLETYSFMRHSGIHGNNFTFPLLL 60

Query: 61  KPCANLASIGDGTMLHAHLFRDGFESDMFVQTSLVDMYSR 95
           K C+NLASIGDGTMLHAHL R  FESD+FVQTSLVDM S+
Sbjct: 61  KACSNLASIGDGTMLHAHLIRVRFESDIFVQTSLVDMCSK 100

[Close]

BLAST of CmaCh13G009490 vs. TAIR 10
Match: AT4G19191.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 2  QIHRFSPSSSLILYLWNLMIRSSVNGG--LEALETYSFMCHFGIHGNNFTFPLLLKPCAN 61
          +++R S  SS  +  WNL IR +VN    +E+L  +  M   G   NNFTFP + K CA 
Sbjct: 7  RLYRISGLSS--VNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACAR 66

Query: 62 LASIGDGTMLHAHLFRDGFESDMFVQTSLVDMY 93
          LA +G   M+HAHL +  F SD+FV T+ VDM+
Sbjct: 67 LADVGCCEMVHAHLIKSPFWSDVFVGTATVDMF 97

[Close]

BLAST of CmaCh13G009490 vs. TAIR 10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 17  WNLMIRSSVN--GGLEALETYSFMCHFGIHGNNFTFPLLLKPCANLASIGDGTMLHAHLF 76
           +N MIR  VN     EAL  Y+ M   G   +NFT+P LLK C  L SI +G  +H  +F
Sbjct: 100 FNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVF 159

Query: 77  RDGFESDMFVQTSLVDMYSR 95
           + G E+D+FVQ SL++MY R
Sbjct: 160 KLGLEADVFVQNSLINMYGR 179

[Close]

BLAST of CmaCh13G009490 vs. TAIR 10
Match: AT3G03580.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 5   RFSPSSSLILYLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLLKPCANLAS 64
           R SP+ +  +YLWN +IR+    GL  EALE Y  +    +  + +TFP ++K CA L  
Sbjct: 64  RVSPAKN--VYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFD 123

Query: 65  IGDGTMLHAHLFRDGFESDMFVQTSLVDMYSRV 96
              G +++  +   GFESD+FV  +LVDMYSR+
Sbjct: 124 AEMGDLVYEQILDMGFESDLFVGNALVDMYSRM 154

[Close]

BLAST of CmaCh13G009490 vs. TAIR 10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-12
Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 17  WNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLLKPCANLASIGDGTMLHAHLF 76
           W+LMIR+  +     +AL+ Y  M + G+    +T+P +LK CA L +I DG ++H+H+ 
Sbjct: 71  WDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVN 130

Query: 77  RDGFESDMFVQTSLVDMYSR 95
              F +DM+V T+LVD Y++
Sbjct: 131 CSDFATDMYVCTALVDFYAK 150

[Close]

BLAST of CmaCh13G009490 vs. TAIR 10
Match: AT4G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 9.4e-12
Identity = 30/83 (36.14%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 15  YLWNLMIRSSVNGGL--EALETYSFMCHFGIHGNNFTFPLLLKPCANLASIGDGTMLHAH 74
           +LWN+MI+   + GL  EA++ YS M   G+  + FT+P ++K  A ++S+ +G  +HA 
Sbjct: 96  FLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAM 155

Query: 75  LFRDGFESDMFVQTSLVDMYSRV 96
           + + GF SD++V  SL+ +Y ++
Sbjct: 156 VIKLGFVSDVYVCNSLISLYMKL 178

The following BLAST results are available for this feature:

BLAST of CmaCh13G009490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C8Q2	1.4e-12	44.09	Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidop...	[more]
Q9SS60	2.0e-11	40.86	Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX...	[more]
Q9C6T2	2.0e-11	46.25	Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX...	[more]
Q9LUS3	4.5e-11	38.75	Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX...	[more]
O49619	1.3e-10	36.14	Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidop...	[more]

BLAST of CmaCh13G009490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6R4	1.2e-35	81.82	pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charanti...	[more]
A0A0A0LT91	1.4e-34	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1	[more]
A0A5D3BIG9	6.7e-34	78.22	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BDP0	6.7e-34	78.22	pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cuc...	[more]
A0A1S3TN93	9.1e-23	65.06	pentatricopeptide repeat-containing protein At3g12770 OS=Vigna radiata var. radi...	[more]

BLAST of CmaCh13G009490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137264.1	2.5e-35	81.82	pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia]	[more]
XP_004137641.1	2.8e-34	80.00	pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus]	[more]
TYJ99083.1	1.4e-33	78.22	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008446053.1	1.4e-33	78.22	PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-...	[more]
XP_038893873.1	6.9e-33	79.00	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloropla...	[more]

BLAST of CmaCh13G009490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19191.1	1.0e-13	44.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G31920.1	1.4e-12	46.25	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G03580.1	1.4e-12	40.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G16610.1	3.2e-12	38.75	pentatricopeptide (PPR) repeat-containing protein	[more]
AT4G35130.1	9.4e-12	36.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 23..95 e-value: 1.8E-5 score: 26.3
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 12..95
None	No IPR available	PANTHER	PTHR24015:SF1934	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 12..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G009490.1	CmaCh13G009490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding