CmaCh13G009480 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G009480
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCma_Chr13: 7442479 .. 7448030 (-)
RNA-Seq ExpressionCmaCh13G009480
SyntenyCmaCh13G009480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACAAGAAGTGTCATCTCTTGGAATTCTATGATTGCAGCTTATTCTCGCGGTTTTCGGGTTAATGAAGCGTTAAAGCTACGCCTGTGGCAAATTCTCTCATCCAAATGTATGTAAACCTTGGTCAAATTCATGCAGCTTGCTCTGTTTTTTATGCCACCAGCGACGAGATAGTAATTTTTTTTATGCCACCAGCAATGGTTACCTGAGATCATTTGATCTTAGAGAGAAAACAAGTGTCAGCAAGAACGCTGGCCCCAAAGGAGTGGATTGTTAGATCCACGTTGGTTAAAGAGGAGACCGAAACATTCTTTATAAGGACATGAAACTTTTAAGGGAACCCAAAAGGGAGAACATAAAGAGACAATATCTACTAGCAGTAAGTTTGACAGTTACAAATAGTATCAAAGCTGGACACTTTCGGGAAAGTATAAAGAAGACAATATCTACTAGCAGTGAGTTTGATGGTTACAAATGGTATCAAACCCAAACACCGGGCCAGTGAGTTGACTGAGCCTTAAAAGGGGGTGGATAATGAGATCCCACTTCGGTTAGAGAAGAAAATGAAGCATTTTGTATAAGCTAGAAACCTTTTCCTAGCAGACGCATTTTGTCGGCTATTTAAAAAGAAAGGGAGCCCAAAAGGAAAAGTCTACAGGCATTGACAGCAGGATTTGATTGCTTGACGAATTAGGAAGGTTGAAGTTACTCCAACAATCTGTGATCATTCATGTAGCAGATAAAATTGAGATTGTTTCTAGTACATCTACAAAAGTTTCTTGGAATTTTGAAATATTTAATAAACTGAAGATGATTCTCATATGTTCCTCTACAAAAGATTGATTCTTATATTTAAGAAACTGTACTCAGGACTGGACAACAAATAAAATTTGAATTACCTCTGTTCCACCTGATTCAAGCTCTCCACTATTGAGAAAGAAAAACAAGGCTTGCAAATTTGTTCTCTGGTAGAAACAAAGAACTGTGATTTGCACTCAGAATCAGATATACATTTTGTGCCGCCCATCTTGGAATATATTGAGGTTTCATAGTTTATGGCGCTCGCATCTTCTCAACAATGTTCCTGCTCTTTTCTTCAATGGTTCGTCTCTTTTCTTCTAGTTTCTCCCCCATCTTCTTCCCTATTTCTAGCATTCTTGCTCTTCTTCCTGTTCTCCTTGGCGGCTTTGGATCATCTTCCTCAGCGTTATGATTTTCCTGCCCAGATGAGCTTATAGAACTAGATGGTGATTCATTCTCCTGCGCGTCTACTCTATTTTGCTGCAAATTTTCTATTTCTTTGTCATTTTCTAATAAAGGGATTTTCATTTCATCTTCATCCAGTGCCTTACTTGAAGCTGGAGTTGGATTACCAGTGCTTGATGAAGCCTTTGATGCATTCATCAAGTCAGTGTGTGGCTGAGAAGGCTCGTTCTGAGGTATTTTATGCTCAATGGAGATGGTTTTACTGGCTTCAGATCTATTTTTTGGCTCAACAGGATTGGATCTTTGATTTTCACATGAAGATTTGTTATCAGAAGCACCTTGGTTGAACCAGATCAATGGTGCAACGTCCCGTGGAACCCAGTCGTCCTTCTCGGCCATCATGAATGGAATGTATATACTTTCACTGTTGGGGAGCACTAAAGTATCCTTGATCACTGCCTGCATAGTAGGTAACATTAGCAGAATATCAGCAGGATTTACACAACATCGTTTAATTTCATGCTGCATCTTAATAACATGTAATGAGTTTGTGTTCATGCTGCTGCATTTTAACCTTTCAGACACTGGATTACACACTTGATCAAGAGGATTCAGGCAGCGTTTTAGTTTTAAACATGGTTACGACGATCATGGAAAGCGAGCGCTAACAAATTCATATACTTGAGGTATGATTTTCTATTTGAAACCATCATTCGTGATTCTTTGTTATCACTGCTTCCTTCATTTTAATATGAAACAAACATATCACGACACGAGTTTCTTTGGCATCCATCACAAGCTAACGTGCTAGCATGAGGCTTGTGCGATGCCAACGATCAAAGAGATACAATATTAATAGCCTTCTGAGAGGATTAACTGTCCCAAAATCTACCCATTATGGACGGATTCTTAAAAATTAAGCCTACTGAACCAACTTCATGTTAGGAAACAAATCTCCATACCTTAAGCCGGTTGTTCAAAAACTGAGCAACATGTGCACTAGATATCTTATGGTCCCCAAACGATGATTCCAAGCGCAACTCCAAATATGGCATGGATGTAAAACTGTACCATAGCTGATCAGAAGGAGGCGGTTTTATATGTACCCGCAGCGTCCCTCGGAGAGATGCAACCTTTAGTACCAAAGAGATCGGCACCTATAAATTCAAAAACAAATGAGAAAATTATGAAAGGGGCTAACTCCGTGCATCCAAGACATCTAACAATGCCTCTTTAGTTTCAGGATACACACTTAAACTTAATTATCAAACACGAAGGTCGACGAACCTGAGAAACCTGTTTAGCAATAGAATTCATTAGAGATTTCCACTTGGATCCACTAGAGCATGAGGACGTGGGGTTCTTACTGTTTTCCGACCCACCTGCAACCGAACATTGAACTACTGAGATTATAATTGAACCTAAAATCAGAATTCTATCTCTGATCTTATGCATTTAGACTTTGTGCAGGCAACAAAAAGAATTATAGGTTACCAGTTCATGAGGATAGAACATATGAAAACCATTTAATGGTTAGTTGCTCACCTTCGTCGTTCTGTTCTGTTCCTTCAGAGGTACTGAACTGCTTTCCAAGATAAACTTCTAGAAATGAAGAGACCTCCCCAACATCACTGGAATCAGATTTAGAGTCTACTGCGCTTTTTTGAAGATCTAATTCATGAACTTCAATTCTAGTTTCGATATCTAAGGCAAAGCCTCCAGAGTATTCAAAGTCAACCTCAAAGGCCCATACCTCACTCAATTCAAAGGGAAGAACCCTTATAGTATTGATATTGGGCGGGAGGTTTCCAGGATGAACTTTAGTACAGCTAACTTCGCGAATGTAACTTGGAGTCCTCATGTTCGACAACATCCTCTGCCATGACAAACAAAAGTATTCATCAAACAGTAAGAGAACGTATGTAACATCCCAAACCCACAGCTAGCAGATCTTGTCCTCTTTAGGCTTTTCCTTTCGGGCTTCCCCTCAAAGTTTTTAAAACGCGTCTGCTAGGTAAAGGTTTCCACACCCTTACAAAGGGTGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATGTAATGATAGGAGTATCAACATTCTCAAAAAAAAAAAGAAAGGATCTCTTGGGGAAAAAAATGAACCTGAATTCGATCGTGCAAGGATTTCATTAGCCCTTCATTGCTTTTGGCATCAAAAAAGAATCTTGACATCAACAAATTCCAACTAAGTGTTCCATCATCAGTCAAGAATCTGTCATCAGAATCTGCCTCAGAAATAACAGAGGCATGACCATGGTGGCTTCCTGAGTGAACCATTGATGGTGTTGCCATATCTTCCTCAAATAAACTTTTAGTACTCTGCGCCTTTGGAATTCCCTTCCCTAAGCCCGATGACGAAACAAAACCTGGACTCGGATGAAACCTATCACTAAAGTTTTTTTCTTCACGCAAAGAAGAAGAAGAAAATTTTACTTTATAATCTGAAGCAGCCTTAGAAGTCTTCTTTGCCAGTTTTTTGAAAAATAGCTGAACCTTCGAAGGAGCGTTAGGCTTGATATCCTTATCAGTAGCTTCAGAATAGTACCCTGCAGAGGGCTTCATAAATGAAGGATACCCAGTTCTTAAAGAAGAGGTATAACTATGGAACTCTTTCTGTAAATTAGCAAACCACTGCAGTCTTTCTTTGTCAACACATGAAGCTAGACGGAGGGCTTTACACCATGATTCCTTCTCCCAGGAAGTTTCAAGAAAAATGAAGATTGTTTTACTTTCATTATAAACTATGGAGGTTCTGTTTTCCAATTTTAAAGGGAACCTTTTCACCCTGAAATACCAATAATCAAATTATAAAAACATGGCGTCCGGAATTCAGAAGAACAATAAAAAAAACACGAAACTTAAGTTCTTATTATGTACCCTCAAATTCAAATTCTATACCGATAACAAGTATCACACTCTAACACATAGCAGAAAAGATTTCCAACATTGATACACATCGAAACCATTAAGGTACCAAATAAATTCAAACAGAGTAACAAAACAAGTATTCTGCACCTTCCACACATCAAGAATATCAACATTTTAATAGCTATAGATTGTAGGGTCGATTTAGAGGAATGAACAAGAAACAAGCAACAAGAACACGCAGCATGAGAAAATTTAAGAACAGTATACACAGCTAATTTTACTTGTATGCATAGCCACGAGCTCCTATAAATTCAACCATTTCTTATCAGATCATAGCAAGGAAAAGAAAAGTTATTGAAAGAATAATGGGCAGGGTTGAAGCTTTTAGAATTGAATTCAGCATCTCAATAAGTAAGAATAAAAGAATAAAATGTCTGTAAGCTAAAAATTTAGAGCATGAAGAACATCATCATATGCTAGAAAGAACTTTTTATATTGAAATGAAATATGAAAGAAGATACCATTTTCTTGAAGGCAAGGTTGCTGCTGAAACGGCTTCAATGGTGCAGCCATTTAATTGAATTGTTTTCGTATTACCATCTGATTCTGATATAATTAACGTCTGGTCCTTGATTCTTGCATACTTTTTTACAGGAGTTACCTCTAAGAAATCTTTCCCTTTCTTTTGTTCTCCAGGTGCTTTCTCTATCATATCTTCTAGCACATTTGATTCTAATATCCATACCCAACCCTGCCAAGCAAAGAGATCATATCGCAAGAACAAAATCCAGAATTATTAGTCCATTTAGTAAACCCAAGAACAACCAACAATACGATTTCAATCAATTTTTTGCGTGTTTGAACTCCGAAACGAAACAAGAACACATAAAAACTGAATTGAATACCTGCTTGTTGGAAAGAAATTCAAGGGATTGAAGAGGATCTGGCTCGGATTGCTCTAGCTTGGCATTGGCTATCGCTAAGTCCTTTTGAGACCTCTTGCTCAACTTGTTCAAAATGATATAGACTGCAAGAGCCTCCGCCGCAAGGATTGCCACAACCCCAAAACCAAAACCGAATAGAAACGTCAGAATCAAGAGGGACCCCATTTCAATTGTTCGCAATCACCAACGAACTCTAACCATGAAATCTCACGAAATCGAGTTGCAGGTACTGGAAAAAGGGATTGGGAATGGGGGGAAAGTGGAGAAAATGAACGAACAATGCGACCCCTAAACCCCAAAAGGAAAAATATCGAAAGAATCTGAATCGGAAACTCTGCTTGGGTCCAGCTTAGTGCCAAGTTAGATGGAAGTAAAAGTAATCGAAATCAACGGAGTGTAACGCTTGAGATTCTTCTTCTTTTTCACTAATTACAGAGAGCAACAGCCACAAACACGGAGAAGAAAAGAATTCTTTCAGTTTCATAG

mRNA sequence

ATGTCTACAAGAAGTGTCATCTCTTGGAATTCTATGATTGCAGCTTATTCTCGCGGTTTTCGGGTTAATGAAGCGTTAAAGCTACGCCTGTGGCAAATTCTCTCATCCAAATTTTCTCCCCCATCTTCTTCCCTATTTCTAGCATTCTTGCTCTTCTTCCTGTTCTCCTTGGCGGCTTTGGATCATCTTCCTCAGCTGCCTTACTTGAAGCTGGAGTTGGATTACCAGTGCTTGATGAAGCCTTTGATGCATTCATCAAGTCAGTGTGTGGCTGAGAAGGCTCGTTCTGAGATCAATGGTGCAACGTCCCGTGGAACCCAGTCGTCCTTCTCGGCCATCATGAATGGAATGTATATACTTTCACTGTTGGGGAGCACTAAAGTATCCTTGATCACTGCCTGCATAGTAGGCAAAGCCTCCAGAGTATTCAAAGTCAACCTCAAAGGCCCATACCTCACTCAATTCAAAGGGAAGAACCCTTATAGTATTGATATTGGGCGGGAGGTTTCCAGGATGAACTTTAGTACAGCTAACTTCGCGAATACTGCAAGAGCCTCCGCCGCAAGGATTGCCACAACCCCAAAACCAAAACCGAATAGAAACGTCAGAATCAAGAGGGACCCCATTTCAATTGTTCGCAATCACCAACGAACTCTAACCATGAAATCTCACGAAATCGAGTTGCAGAGAGCAACAGCCACAAACACGGAGAAGAAAAGAATTCTTTCAGTTTCATAG

Coding sequence (CDS)

ATGTCTACAAGAAGTGTCATCTCTTGGAATTCTATGATTGCAGCTTATTCTCGCGGTTTTCGGGTTAATGAAGCGTTAAAGCTACGCCTGTGGCAAATTCTCTCATCCAAATTTTCTCCCCCATCTTCTTCCCTATTTCTAGCATTCTTGCTCTTCTTCCTGTTCTCCTTGGCGGCTTTGGATCATCTTCCTCAGCTGCCTTACTTGAAGCTGGAGTTGGATTACCAGTGCTTGATGAAGCCTTTGATGCATTCATCAAGTCAGTGTGTGGCTGAGAAGGCTCGTTCTGAGATCAATGGTGCAACGTCCCGTGGAACCCAGTCGTCCTTCTCGGCCATCATGAATGGAATGTATATACTTTCACTGTTGGGGAGCACTAAAGTATCCTTGATCACTGCCTGCATAGTAGGCAAAGCCTCCAGAGTATTCAAAGTCAACCTCAAAGGCCCATACCTCACTCAATTCAAAGGGAAGAACCCTTATAGTATTGATATTGGGCGGGAGGTTTCCAGGATGAACTTTAGTACAGCTAACTTCGCGAATACTGCAAGAGCCTCCGCCGCAAGGATTGCCACAACCCCAAAACCAAAACCGAATAGAAACGTCAGAATCAAGAGGGACCCCATTTCAATTGTTCGCAATCACCAACGAACTCTAACCATGAAATCTCACGAAATCGAGTTGCAGAGAGCAACAGCCACAAACACGGAGAAGAAAAGAATTCTTTCAGTTTCATAG

Protein sequence

MSTRSVISWNSMIAAYSRGFRVNEALKLRLWQILSSKFSPPSSSLFLAFLLFFLFSLAALDHLPQLPYLKLELDYQCLMKPLMHSSSQCVAEKARSEINGATSRGTQSSFSAIMNGMYILSLLGSTKVSLITACIVGKASRVFKVNLKGPYLTQFKGKNPYSIDIGREVSRMNFSTANFANTARASAARIATTPKPKPNRNVRIKRDPISIVRNHQRTLTMKSHEIELQRATATNTEKKRILSVS
Homology
[Close]
BLAST of CmaCh13G009480 vs. ExPASy TrEMBL
Match: A0A5D3BIG9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002870 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-04
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 2   STRSVISWNSMIAAYSRGFRVNEALKLRLWQILSSKFSPPSSSLFLAFLLFF 54
           STRSVI WNSMIAAYSRGFRVNEALKL   ++L   F  P+SS F++ L  F
Sbjct: 115 STRSVIFWNSMIAAYSRGFRVNEALKL-FREMLGGGFE-PNSSTFVSLLSGF 164

[Close]
BLAST of CmaCh13G009480 vs. ExPASy TrEMBL
Match: A0A0A0LT91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-04
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 2   STRSVISWNSMIAAYSRGFRVNEALKLRLWQILSSKFSPPSSSLFLAFLLFF 54
           STRSVISWNSMIAAYSR FRVNEALKL   ++L   F  P+SS F++ L  F
Sbjct: 115 STRSVISWNSMIAAYSRSFRVNEALKL-FREMLGGGFE-PNSSTFVSLLSGF 164

[Close]
BLAST of CmaCh13G009480 vs. ExPASy TrEMBL
Match: A0A1S3BDP0 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488899 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-04
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 2   STRSVISWNSMIAAYSRGFRVNEALKLRLWQILSSKFSPPSSSLFLAFLLFF 54
           STRSVI WNSMIAAYSRGFRVNEALKL   ++L   F  P+SS F++ L  F
Sbjct: 115 STRSVIFWNSMIAAYSRGFRVNEALKL-FREMLGGGFE-PNSSTFVSLLSGF 164

The following BLAST results are available for this feature:
BLAST of CmaCh13G009480 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G009480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BIG96.4e-0465.38Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0LT916.4e-0465.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1[more]
A0A1S3BDP06.4e-0465.38pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cuc... [more]
BLAST of CmaCh13G009480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh13G009480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 5..40
score: 9.558311

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G009480.1CmaCh13G009480.1mRNA