![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CmaCh13G009170 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATATACCAAAATAATTAACTTATTATATATTTATTTATGTTGGATTACTGGATTTATTAGATGAAATGGTGTTATTGTATTAAACACACTCGTCTTTACTTAACCATCGTGGTTATTTCAAATTTCAACGACTTTTATTTTTAAAATTCAAAATTTCAAAATTTTACTTTAATACGAGACAACGGTTAGTATTTTCTTTATTAAAAAAAAGAAAAAGAAGAAAAACAAGTCTGGTCTGAGAGACAAAAAGCAGAAATGAATGATCGGTCAAACACGTCAGTCATCTAACGAACGTCACAGACCTCTCCTCGACGTCCACGTCAGGCGCACGTTAGAACTCAGCACAAAAATTTCACTATTCACTCGCACATACACAAGTCCCCATCAAAGGAATCCCTCATTTCTGACCCAAAAATGGCATCCCACCTCTCAAAATGCACAAATCCCCATAGTCTTCATCAACAATTTCCCCTTCTCCCACCCTTTTCCATTTCCCTTACAGGTCTCCCATGGCTAAACCCACCAACCAGCTGCGCATTTTAGCACCTCCTGACCCTGATTCTCCTCCCCTTAAACCTCCTTTCAGAGCTCCTCCCTCTGCTTCCATGGCTAACAATCACTCCACTCCTGCAAAACTTGATTCCGCCATAGCTGCTGCTTCTTCTCCTCCAAATCCCTCTCCTTTGTCCAACCACATCCCATTTTCCGAACTCCACAGACAACCTGGTTGTTTGTCTCAAAAACCAAAGAATTCTAACCCACCTCCATCTTTGACCGTTCCTACTATGGTCAAATCAAAACCCCACCTCCAGAAAATTGCTTCTGGTGGGGATGAGAAATTGAGTAAGCTGTGTAAAGAGATGGGCACTAAGAAGTTTTTTGATGAGAAGAAGGAAGCTAATAAAGGGGTTGATGACGATAGTAAAGCTCTCTATCTTGTGGTGAAGGAGAAGGAGAAGGAATTAAAAGAGCCTCAGAAGGGGCATGGTCTTCACACTTTGAGACCAACAGTTTCTTTACTTCGAAAGGATGGGAGAAGAAGGTCCCTTGCTGATCCCCAAGTTGAATTGGCTGATATTCTTGCAAAAAATGGCGTCAAAGTAGTCTCAGTCGACATGCCTCCGGCTATGCAGATCCATGCTGTGGATTGTGCAAGAAAAGCTCATGATAGCATGGAGAAATTCACTTCCAAGACTCTTGCTTTATCGCTCAAGAGGGTAATTAGCTTAACAGTTCTGTACAATCTGGAAACTTTTAGAATGAATTAGCTAATAATTTTGCTTGCTTGCTTGTGAATTTCCAGGAATTTGATAGCGTGTATGGTCCGGCCTGGCACTGCATCGTGGGAAAAAGTTTTGGGTCTTTTGTGACTCATTCAGTCGGCGGTTTCCTATATTTCTCAATGGACCAAAAGCTGTATATTCTATTGTTCAAAACTTCAGTACAAAGAGCTGATTGAAAATGAAGTAGATGTCCAAAACAGAGCTGGGAAATCCATTAAATTTGGCATAGTAGAGTTTAAGAAAGGTAAAAGAACCGTCCATCCGAATACTTGTACATTGATTATGATGAGCAACACACCAACAATACAAAATATTCAGTCATTGAGGTTGAGTGATAGAATAACTTCCAATCTGTTCTCTGGAGATCTCTTACAAGCTGTTTACTGAACAATTTTTATTGCAGTTCTTGAGGTTGAATGATAGAATAACCCTTTTGTTACAGCTCCAAGACCCAATTCTTTACATATTCTTCTCTCTATTCTCTACAAATATTGCAGACAATCATTTCAATGAATGAAAACATGTTCATATGCATGCCAGCG ATATACCAAAATAATTAACTTATTATATATTTATTTATGTTGGATTACTGGATTTATTAGATGAAATGGTGTTATTGTATTAAACACACTCGTCTTTACTTAACCATCGTGGTTATTTCAAATTTCAACGACTTTTATTTTTAAAATTCAAAATTTCAAAATTTTACTTTAATACGAGACAACGGTTAGTATTTTCTTTATTAAAAAAAAGAAAAAGAAGAAAAACAAGTCTGGTCTGAGAGACAAAAAGCAGAAATGAATGATCGGTCAAACACGTCAGTCATCTAACGAACGTCACAGACCTCTCCTCGACGTCCACGTCAGGCGCACGTTAGAACTCAGCACAAAAATTTCACTATTCACTCGCACATACACAAGTCCCCATCAAAGGAATCCCTCATTTCTGACCCAAAAATGGCATCCCACCTCTCAAAATGCACAAATCCCCATAGTCTTCATCAACAATTTCCCCTTCTCCCACCCTTTTCCATTTCCCTTACAGGTCTCCCATGGCTAAACCCACCAACCAGCTGCGCATTTTAGCACCTCCTGACCCTGATTCTCCTCCCCTTAAACCTCCTTTCAGAGCTCCTCCCTCTGCTTCCATGGCTAACAATCACTCCACTCCTGCAAAACTTGATTCCGCCATAGCTGCTGCTTCTTCTCCTCCAAATCCCTCTCCTTTGTCCAACCACATCCCATTTTCCGAACTCCACAGACAACCTGGTTGTTTGTCTCAAAAACCAAAGAATTCTAACCCACCTCCATCTTTGACCGTTCCTACTATGGTCAAATCAAAACCCCACCTCCAGAAAATTGCTTCTGGTGGGGATGAGAAATTGAGTAAGCTGTGTAAAGAGATGGGCACTAAGAAGTTTTTTGATGAGAAGAAGGAAGCTAATAAAGGGGTTGATGACGATAGTAAAGCTCTCTATCTTGTGGTGAAGGAGAAGGAGAAGGAATTAAAAGAGCCTCAGAAGGGGCATGGTCTTCACACTTTGAGACCAACAGTTTCTTTACTTCGAAAGGATGGGAGAAGAAGGTCCCTTGCTGATCCCCAAGTTGAATTGGCTGATATTCTTGCAAAAAATGGCGTCAAAGTAGTCTCAGTCGACATGCCTCCGGCTATGCAGATCCATGCTGTGGATTGTGCAAGAAAAGCTCATGATAGCATGGAGAAATTCACTTCCAAGACTCTTGCTTTATCGCTCAAGAGGGAATTTGATAGCGTGTATGGTCCGGCCTGGCACTGCATCGTGGGAAAAAGTTTTGGGTCTTTTGTGACTCATTCAGTCGGCGGTTTCCTATATTTCTCAATGGACCAAAAGCTGTATATTCTATTGTTCAAAACTTCAGTACAAAGAGCTGATTGAAAATGAAGTAGATGTCCAAAACAGAGCTGGGAAATCCATTAAATTTGGCATAGTAGAGTTTAAGAAAGGTAAAAGAACCGTCCATCCGAATACTTGTACATTGATTATGATGAGCAACACACCAACAATACAAAATATTCAGTCATTGAGGTTGAGTGATAGAATAACTTCCAATCTGTTCTCTGGAGATCTCTTACAAGCTGTTTACTGAACAATTTTTATTGCAGTTCTTGAGGTTGAATGATAGAATAACCCTTTTGTTACAGCTCCAAGACCCAATTCTTTACATATTCTTCTCTCTATTCTCTACAAATATTGCAGACAATCATTTCAATGAATGAAAACATGTTCATATGCATGCCAGCG ATGGCTAAACCCACCAACCAGCTGCGCATTTTAGCACCTCCTGACCCTGATTCTCCTCCCCTTAAACCTCCTTTCAGAGCTCCTCCCTCTGCTTCCATGGCTAACAATCACTCCACTCCTGCAAAACTTGATTCCGCCATAGCTGCTGCTTCTTCTCCTCCAAATCCCTCTCCTTTGTCCAACCACATCCCATTTTCCGAACTCCACAGACAACCTGGTTGTTTGTCTCAAAAACCAAAGAATTCTAACCCACCTCCATCTTTGACCGTTCCTACTATGGTCAAATCAAAACCCCACCTCCAGAAAATTGCTTCTGGTGGGGATGAGAAATTGAGTAAGCTGTGTAAAGAGATGGGCACTAAGAAGTTTTTTGATGAGAAGAAGGAAGCTAATAAAGGGGTTGATGACGATAGTAAAGCTCTCTATCTTGTGGTGAAGGAGAAGGAGAAGGAATTAAAAGAGCCTCAGAAGGGGCATGGTCTTCACACTTTGAGACCAACAGTTTCTTTACTTCGAAAGGATGGGAGAAGAAGGTCCCTTGCTGATCCCCAAGTTGAATTGGCTGATATTCTTGCAAAAAATGGCGTCAAAGTAGTCTCAGTCGACATGCCTCCGGCTATGCAGATCCATGCTGTGGATTGTGCAAGAAAAGCTCATGATAGCATGGAGAAATTCACTTCCAAGACTCTTGCTTTATCGCTCAAGAGGGAATTTGATAGCGTGTATGGTCCGGCCTGGCACTGCATCGTGGGAAAAAGTTTTGGGTCTTTTGTGACTCATTCAGTCGGCGGTTTCCTATATTTCTCAATGGACCAAAAGCTGTATATTCTATTGTTCAAAACTTCAGTACAAAGAGCTGATTGA MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAASSPPNPSPLSNHIPFSELHRQPGCLSQKPKNSNPPPSLTVPTMVKSKPHLQKIASGGDEKLSKLCKEMGTKKFFDEKKEANKGVDDDSKALYLVVKEKEKELKEPQKGHGLHTLRPTVSLLRKDGRRRSLADPQVELADILAKNGVKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDSVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD Homology
BLAST of CmaCh13G009170 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.5e-14 Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 0
BLAST of CmaCh13G009170 vs. ExPASy Swiss-Prot
Match: Q86A88 (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.0e-14 Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0
BLAST of CmaCh13G009170 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 1.0e-13 Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0
BLAST of CmaCh13G009170 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 1.0e-13 Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0
BLAST of CmaCh13G009170 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 1.0e-13 Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0
BLAST of CmaCh13G009170 vs. ExPASy TrEMBL
Match: A0A6J1KET7 (uncharacterized protein LOC111495174 OS=Cucurbita maxima OX=3661 GN=LOC111495174 PE=4 SV=1) HSP 1 Score: 563.9 bits (1452), Expect = 3.8e-157 Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
BLAST of CmaCh13G009170 vs. ExPASy TrEMBL
Match: A0A6J1E7P6 (uncharacterized protein LOC111431561 OS=Cucurbita moschata OX=3662 GN=LOC111431561 PE=4 SV=1) HSP 1 Score: 533.5 bits (1373), Expect = 5.5e-148 Identity = 276/288 (95.83%), Postives = 279/288 (96.88%), Query Frame = 0
BLAST of CmaCh13G009170 vs. ExPASy TrEMBL
Match: A0A5D3BH95 (Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003270 PE=4 SV=1) HSP 1 Score: 415.2 bits (1066), Expect = 2.2e-112 Identity = 226/294 (76.87%), Postives = 242/294 (82.31%), Query Frame = 0
BLAST of CmaCh13G009170 vs. ExPASy TrEMBL
Match: A0A1S3AVF4 (uncharacterized protein LOC103483107 OS=Cucumis melo OX=3656 GN=LOC103483107 PE=4 SV=1) HSP 1 Score: 415.2 bits (1066), Expect = 2.2e-112 Identity = 226/294 (76.87%), Postives = 242/294 (82.31%), Query Frame = 0
BLAST of CmaCh13G009170 vs. ExPASy TrEMBL
Match: A0A0A0LW58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045690 PE=4 SV=1) HSP 1 Score: 405.6 bits (1041), Expect = 1.7e-109 Identity = 224/292 (76.71%), Postives = 241/292 (82.53%), Query Frame = 0
BLAST of CmaCh13G009170 vs. NCBI nr
Match: XP_023000852.1 (uncharacterized protein LOC111495174 [Cucurbita maxima]) HSP 1 Score: 563.9 bits (1452), Expect = 7.8e-157 Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
BLAST of CmaCh13G009170 vs. NCBI nr
Match: KAG7019845.1 (hypothetical protein SDJN02_18810, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 545.8 bits (1405), Expect = 2.2e-151 Identity = 281/289 (97.23%), Postives = 283/289 (97.92%), Query Frame = 0
BLAST of CmaCh13G009170 vs. NCBI nr
Match: XP_023520376.1 (uncharacterized protein LOC111783690 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 544.7 bits (1402), Expect = 4.9e-151 Identity = 279/287 (97.21%), Postives = 281/287 (97.91%), Query Frame = 0
BLAST of CmaCh13G009170 vs. NCBI nr
Match: KAG6584250.1 (hypothetical protein SDJN03_20182, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 537.3 bits (1383), Expect = 7.8e-149 Identity = 278/288 (96.53%), Postives = 280/288 (97.22%), Query Frame = 0
BLAST of CmaCh13G009170 vs. NCBI nr
Match: XP_022924012.1 (uncharacterized protein LOC111431561 [Cucurbita moschata]) HSP 1 Score: 533.5 bits (1373), Expect = 1.1e-147 Identity = 276/288 (95.83%), Postives = 279/288 (96.88%), Query Frame = 0
BLAST of CmaCh13G009170 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein ) HSP 1 Score: 125.2 bits (313), Expect = 8.7e-29 Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = 0
BLAST of CmaCh13G009170 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein ) HSP 1 Score: 99.0 bits (245), Expect = 6.6e-21 Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 0
BLAST of CmaCh13G009170 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein ) HSP 1 Score: 81.6 bits (200), Expect = 1.1e-15 Identity = 49/109 (44.95%), Postives = 68/109 (62.39%), Query Frame = 0
BLAST of CmaCh13G009170 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 ) HSP 1 Score: 73.6 bits (179), Expect = 3.0e-13 Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 0
BLAST of CmaCh13G009170 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein ) HSP 1 Score: 73.6 bits (179), Expect = 3.0e-13 Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|