CmaCh13G008070 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G008070
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr13: 6850267 .. 6851719 (+)
RNA-Seq ExpressionCmaCh13G008070
SyntenyCmaCh13G008070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGTCACAGTTTGGCTTGGAGATAGAATTAGGCTGGAGTTTGATAGGAAACTTCAGAGGCAGACTTATTCCACCTCTTCATTCGTGTATTGGCAATTTACTCAAAACTGTTTGCAGTAAACATGACTTCAATTTTCTTAAGGTATCCGGTAAAAAAAAGCCTCAAGATATTAGTTTAGTGGTACTTGAGAACAAGATCTTTTAGAATGAAGCTCTGTTGGATCACTTTGGGCATTCACTAGTGAGTTTATTTGCTAAACAGTGTTTGACCCCACTGTTGAATGCCTGCTCCTTGTTTCTCATTCCCTATTTCTGTTGCACCTGCTCCAATTATCTTCTGCTACCGAAGTTGTGATCTGAAACAAGTTTATATTTCGTAAATATGTAGCTTGATGACAGCCTTTTGGTTTTCTTCTGCAATGCTTGTTGGGCAAAGCGCCTGACCAGCTTGTATTTGGTCAGGGCTTGATCTACGCTGTATAAATACTATTTTTATGATCAATATGCTAAACAAATGAAAGAAGCTCTGTTGGATCACTCTGGGCATTCACTAGTGGGTTTCTTTCATTTGAATGCATTCACAAATGAAAGAAAATGTGTGTTCTTCTGACAGTCGCTGGCCAAGCGGCTAATTACTAGAATTTGGTTCTTCAAATCTCCGTGTTCTACTTTTGCAGTGGCCAAGCAGCTGTTCCATCGCTTTTCCCCTAGCTTCCAAGAAAGGTTCACAGGGACTGATTACATGTATGTTTCTCTGTACCTTCATCTCAGAACAAAGGTGAGCTCATTGTTGGATCAAAATGCTTTTGTCAGGGCAGAATCTGGTAGAATTTTTCTCATTTCTAATCCTGAAAATCCAGAGTTTCCCTTTAGAGGAAATCAAGTTTTCATCACAAAGGAACTCCCAAGAATACCACTTTTCGATCATACGATCTATATCGTGTACAACTACATCAGTGGTGTTCCCTTCTCTTGCTATGATAGCAGCACTGTAAATTGTTGCCATTCTTCCTGGTGCCAGAGGACTATCTCCTCTCGGTCCATCCACGACCACCACATCCCATTTTACTTCATAAACTTCTCTTGGAAGATCTGTCAACGCAAGTTGGCATCTGGATGAATTCCTGAGGCCCGAGTTTGGTGCACATGATTTGTTTCCTCTGGCATGTTTTAACAACTTGTAAGCTTTTTCTGCATGAAGCTTGTAATCAACTTTGTACATCCGGGTGTGATTTGAATTGACTTTGAATATGCTCAGTTTGTAGGGATCGTCCTCCAGAAAAACATTCTTTCCACCAGGATTGACTGCTGAGAGGTTAAGGTACTGTGATTCTATCCCAAAGAAAAGGAGATTGCAGGGTACTTTTTTGGCAATCAGATTTGAAAGAAGCTTGAATTCTTTCTCTGAAATGGTAGCTTCATTTGCAGAGGTTCTACTGTGATTTCTTGA

mRNA sequence

ATGCTTGTCACAGTTTGGCTTGGAGATAGAATTAGGCTGGAGTTTGATAGGAAACTTCAGAGGCAGACTTATTCCACCTCTTCATTCGTGTATTGGCAATTTACTCAAAACTTGGCCAAGCAGCTGTTCCATCGCTTTTCCCCTAGCTTCCAAGAAAGGTTCACAGGGACTGATTACATGTATGTTTCTCTGTACCTTCATCTCAGAACAAAGAGTTTCCCTTTAGAGGAAATCAAGTTTTCATCACAAAGGAACTCCCAAGAATACCACTTTTCGATCATACGATCTATATCGTGTACAACTACATCAGTGGTGTTCCCTTCTCTTGCTATGATAGCAGCACTATCTGTCAACGCAAGTTGGCATCTGGATGAATTCCTGAGGCCCGAGTTTGGTGCACATGATTTGTTTCCTCTGGCATGTTTTAACAACTTAAAAACATTCTTTCCACCAGGATTGACTGCTGAGAGGTTAAGAGGTTCTACTGTGATTTCTTGA

Coding sequence (CDS)

ATGCTTGTCACAGTTTGGCTTGGAGATAGAATTAGGCTGGAGTTTGATAGGAAACTTCAGAGGCAGACTTATTCCACCTCTTCATTCGTGTATTGGCAATTTACTCAAAACTTGGCCAAGCAGCTGTTCCATCGCTTTTCCCCTAGCTTCCAAGAAAGGTTCACAGGGACTGATTACATGTATGTTTCTCTGTACCTTCATCTCAGAACAAAGAGTTTCCCTTTAGAGGAAATCAAGTTTTCATCACAAAGGAACTCCCAAGAATACCACTTTTCGATCATACGATCTATATCGTGTACAACTACATCAGTGGTGTTCCCTTCTCTTGCTATGATAGCAGCACTATCTGTCAACGCAAGTTGGCATCTGGATGAATTCCTGAGGCCCGAGTTTGGTGCACATGATTTGTTTCCTCTGGCATGTTTTAACAACTTAAAAACATTCTTTCCACCAGGATTGACTGCTGAGAGGTTAAGAGGTTCTACTGTGATTTCTTGA

Protein sequence

MLVTVWLGDRIRLEFDRKLQRQTYSTSSFVYWQFTQNLAKQLFHRFSPSFQERFTGTDYMYVSLYLHLRTKSFPLEEIKFSSQRNSQEYHFSIIRSISCTTTSVVFPSLAMIAALSVNASWHLDEFLRPEFGAHDLFPLACFNNLKTFFPPGLTAERLRGSTVIS
Homology
[Close]
BLAST of CmaCh13G008070 vs. ExPASy TrEMBL
Match: D7SGZ2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g01340 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-08
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 56  GTDYMYVSLYLHLRTKSFPLEEIKFSSQRNSQEYHFSIIRSISCTTTSVVFPSLAMIAAL 115
           G + +   L   L+ +SFPLEE KFSS RNSQE HFSIIRS S TTT V+FP+LA++ A+
Sbjct: 12  GQNLVEFDLPTSLKFQSFPLEETKFSSHRNSQENHFSIIRSTSWTTTLVMFPALAIMLAV 71

Query: 116 SVNAS 121
           ++ AS
Sbjct: 72  TLYAS 76

[Close]
BLAST of CmaCh13G008070 vs. NCBI nr
Match: CBI15672.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-07
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 56  GTDYMYVSLYLHLRTKSFPLEEIKFSSQRNSQEYHFSIIRSISCTTTSVVFPSLAMIAAL 115
           G + +   L   L+ +SFPLEE KFSS RNSQE HFSIIRS S TTT V+FP+LA++ A+
Sbjct: 12  GQNLVEFDLPTSLKFQSFPLEETKFSSHRNSQENHFSIIRSTSWTTTLVMFPALAIMLAV 71

Query: 116 SVNAS 121
           ++ AS
Sbjct: 72  TLYAS 76

[Close]
BLAST of CmaCh13G008070 vs. NCBI nr
Match: KAG6753221.1 (hypothetical protein POTOM_043268 [Populus tomentosa])

HSP 1 Score: 55.1 bits (131), Expect = 6.8e-04
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 68  LRTKSFPLEEIKFSSQRNSQEYHFSIIRSISCTTTSVVFPSLAMIAAL 116
           L+   F  E IKF+S RNSQE HFSI+ S SCT TSV FP+LA+I A+
Sbjct: 471 LKLHIFLFEAIKFTSYRNSQENHFSIVLSTSCTITSVAFPALAIILAV 518

The following BLAST results are available for this feature:
BLAST of CmaCh13G008070 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G008070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
D7SGZ28.4e-0856.92Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g01340 PE=4 SV=... [more]
BLAST of CmaCh13G008070 vs. NCBI nr
Match NameE-valueIdentityDescription
CBI15672.31.7e-0756.92unnamed protein product, partial [Vitis vinifera][more]
KAG6753221.16.8e-0460.42hypothetical protein POTOM_043268 [Populus tomentosa][more]
BLAST of CmaCh13G008070 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G008070.1CmaCh13G008070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane