CmaCh13G007980 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G007980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Citrulline--aspartate ligase
Location	Cma_Chr13: 6786718 .. 6789081 (-)
RNA-Seq Expression	CmaCh13G007980
Synteny	CmaCh13G007980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACCATAAACTTGAAGACTGATCGCGGGCGGACCGACGACCTGGACATTTGTAAGAACAGTGTCATAGAGAGAAAACGAAGGCTGAAATTCTGAGAATTGCAAAATTACCGGCGGCCATTAGAGAGTGATTAAGATCTAAACTGATAGATCTAGGCTTGAAATTCTCCAACAGAATCAGAGAAAATCGAGGACTGAATCGTTTCCGAAAATTCCAAGATTGACTGCACAAATCGGAGACCTGGGAGTGCCGGCTTCCATTTAAATACAAAAACTTCACCACTCTAATGGCTACTCATTTCTACTTTAATTGTTACTCTACATTTTAATTAATATTCACGTACCTGATAATAATTACAAAACCAGTACGGCTATTATTTATTATTTATTATTTATTATTTATTTTTCTCTCCAAATTTTTAATGGATTTAATTAATTTAAATAATTTTATATAAAGATATGTTAATTGAGTATTTATTGACACTATTTATAAATTAGCCCGTTATTAAATATAGTTAAATAATTTTTTATTTACAAAAATATATTAAATTTTATTAGTTATGATTAATTAATTTATATCTATTTATTAAAATATGATTTAATTGATTAATTAAGACATAAATATTAATGAACACCACAATCTACAATCTTCAAATATTATTTCAGATCTATGAAAAAAAAAATCTTAAAACTCTTTTATTTTTTTGCTATATATTTTAATTATTTTCAATTAAACACTTTAAATCTTTTTTTAAAATGTGCTCGTGTAACACAAAAACCACAGGTAAATATAAATAACATTTAATTTAATCGTGATCGATAAAATAACGAAAATTAATTTAATTATTAAAATATAGGATTAAAACAACACTCACTTACGAGTATTTAGCTATATAATGGGATCTTTACTAATTCACATGGGATTTTACGTTCTCCATGTTACTCAGGTCAGAGTATAACTGTAATAACTTAAGTGCACTACTAATAGATATTGTTCGCTTTTGCCTATTACATATAGCCGTCAATCTCACGATTTTAAAACACGTCTATTAGAAAGCTTCGTTACTCTCTCCAACCGATGTAAAATCTCACCTAATTAAGTTTTCGACTACTGGGTTGTCGCCATCTAGGGTGAATCATTACACTGCTCGTTCGAGAATTACGATCTTTGGCTTTGAAACTGCTCCCCATGTGAATCGCTTTTGGGTACCACTCATTATAGATTATATAAGATTCTAATTATGTGACAAACAAAAAGAGAAAATCCAAAGAACAAAAGCTGTAAGCAGCTGACAAAGATTCCAAGTGGCAAATGTATAATCAATTGGGAGATTTCTAATATATGATTATTATAATTATTTAATTAAGCATATTTTTGGTGATAATTATAGAATATTTTTAAAAAAGAAAAATTTAGCGCCAAATTTGATTAAGAAAATAAGAGAGAAATTAAATTAAAAAAAAAAAGGGGAATTATTTATCAAATAATATTAGTCTACGGGTTAGAATCTCCAGTGTCGTTGGAGAGCCGATTAATCGTCCTTTGAAAATGAATTACGTGTGAAAGGGACGCGTAGCTATAATGTTAATTGCTATTTCATTGTTCATTAGATCGCCTCTATTACGGCCGCCGCTTGTTTTAAACCCTAGCGTCTTAGCCATTTTCAGAGAGCTGTTTGGCAGAAGGCTGTTTGTTAATCTCAGAGGCTTGTGAACACATCACGACAATCGCCGCCATCGCTATGGCTCAGTTAATGGGTGGTTCTCTGTTCTCAACTGCTCCCGGCGGGTTTCACCCATCCAAAGCAGGTATTTTCGTTTGAAATCTTATGTTTTCTGTCGTTCGAAGAATAAGATTGGAAATGGGAACGGGAATGGATTTGTTTATGGTAACTATTTTCATTTGTTCATCCGAGTTTCTGGCTACTCTGTAATTTTTCTTTCGGGGAGATGAATGGACTAGTCTTATGTCGATGGTGGAGAATATGATTCGATTGAGTCATGGTCTGTGGTTGTTAAAATGCGTCATCTTAGATTGCATTTCTGTTTCTATTTTCAGAGTCAGTGGCGAGTTACTGCAGGATATCTGGCTCGACGAAGTTGCATTCATTTCAAGAGGCATTTGAATCAATAATGCTCTCCCTCCTATTCTTACATGATTTTTTTTAATTAATTCCGGCCTGTTTTTATCTGATTCTTGGACTTATTCTATTGCATTTGTGGCTGCAGCTGGGTGCCAAAGCGTCTGAAATCCATGGCAATAGCATAGCTTGTAACATGGCCAGTGTTCTGCGGTCGAATAAGAAAAGCGGTGAGGTTCCCTTTGTTGCTTGGTCTGCGCTTAATTCCTTCCCCGGGTAG

mRNA sequence

ATGACAACCATAAACTTGAAGACTGATCGCGGGCGGACCGACGACCTGGACATTTAGGCTTGTGAACACATCACGACAATCGCCGCCATCGCTATGGCTCAGTTAATGGGTGGTTCTCTGTTCTCAACTGCTCCCGGCGGGTTTCACCCATCCAAAGCAGATTGCATTTCTGTTTCTATTTTCAGAGTCAGTGGCGAGTTACTGCAGGATATCTGGCTCGACGAACTGGGTGCCAAAGCGTCTGAAATCCATGGCAATAGCATAGCTTGTAACATGGCCAGTGTTCTGCGGTCGAATAAGAAAAGCGGTGAGGTTCCCTTTGTTGCTTGGTCTGCGCTTAATTCCTTCCCCGGGTAG

Coding sequence (CDS)

ATGGCTCAGTTAATGGGTGGTTCTCTGTTCTCAACTGCTCCCGGCGGGTTTCACCCATCCAAAGCAGATTGCATTTCTGTTTCTATTTTCAGAGTCAGTGGCGAGTTACTGCAGGATATCTGGCTCGACGAACTGGGTGCCAAAGCGTCTGAAATCCATGGCAATAGCATAGCTTGTAACATGGCCAGTGTTCTGCGGTCGAATAAGAAAAGCGGTGAGGTTCCCTTTGTTGCTTGGTCTGCGCTTAATTCCTTCCCCGGGTAG

Protein sequence

MAQLMGGSLFSTAPGGFHPSKADCISVSIFRVSGELLQDIWLDELGAKASEIHGNSIACNMASVLRSNKKSGEVPFVAWSALNSFPG

Homology

[Close]

BLAST of CmaCh13G007980 vs. ExPASy TrEMBL
Match: A0A6J1KF74 (Citrulline--aspartate ligase OS=Cucurbita maxima OX=3661 GN=LOC111495262 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.1e-18
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MAQLMGGSLFSTAPGGFHPSKADCISVSIFRVSGELLQDIWLDELGAKASEIHGNSIACN 60
          MAQLMGGSLFSTAPGGFHPSKA+ ++ S  R+SG      +  ELGAKASEIHGNSIACN
Sbjct: 1  MAQLMGGSLFSTAPGGFHPSKAESVA-SYCRISGSTKLHSF-QELGAKASEIHGNSIACN 60

Query: 61 MASVLRSNKKS 72
          MASVLRSNKKS
Sbjct: 61 MASVLRSNKKS 69

[Close]

BLAST of CmaCh13G007980 vs. ExPASy TrEMBL
Match: A0A6J1E7A9 (Citrulline--aspartate ligase OS=Cucurbita moschata OX=3662 GN=LOC111431281 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 52/71 (73.24%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 1  MAQLMGGSLFSTAPGGFHPSKADCISVSIFRVSGELLQDIWLDELGAKASEIHGNSIACN 60
          MAQLMGG LFSTAPGGFHPSKA+ ++ S  R+SG      +  ELGAKASEIHGNSIACN
Sbjct: 1  MAQLMGGFLFSTAPGGFHPSKAESVA-SYCRISGPTKLHSF-QELGAKASEIHGNSIACN 60

Query: 61 MASVLRSNKKS 72
           ASVLRSNKKS
Sbjct: 61 RASVLRSNKKS 69

[Close]

BLAST of CmaCh13G007980 vs. ExPASy TrEMBL
Match: A0A6J1GSL4 (Citrulline--aspartate ligase OS=Cucurbita moschata OX=3662 GN=LOC111457148 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-11
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MAQLMGGSLFSTAPGGFHPSKADCISVSIFRVSGELLQDIWLDELGAKASEIHGNSIACN 60
          MA+LMGGSLFS+A G F PSK + ++ +  R+SG +   ++  ELGAKASE+HGN IA N
Sbjct: 1  MARLMGGSLFSSATGAFQPSKTESVA-NYCRISGPVKLHLF-QELGAKASELHGNGIASN 60

Query: 61 MASVLRSNKKS 72
           A VLRSNKKS
Sbjct: 61 RAGVLRSNKKS 69

[Close]

BLAST of CmaCh13G007980 vs. ExPASy TrEMBL
Match: A0A0A0LWM9 (Citrulline--aspartate ligase OS=Cucumis sativus OX=3659 GN=Csa_1G050400 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.5e-11
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1  MAQLMGGSLFSTAPGGFHPSKADCISVSIFRVSGELLQDIWLDELGAKASEIHGNSIACN 60
          MAQLMGGSLFS+AP GFHPSK + ++ S  R+S  L +     ELGAK  EIHGN ++ N
Sbjct: 1  MAQLMGGSLFSSAPVGFHPSKTEAVA-SYCRIS-SLTKLHSFQELGAKTCEIHGNGLSSN 60

Query: 61 MASVLRSNKK 71
           A VLRSNKK
Sbjct: 61 SAGVLRSNKK 68

[Close]

BLAST of CmaCh13G007980 vs. ExPASy TrEMBL
Match: A0A6J1K5F5 (Citrulline--aspartate ligase OS=Cucurbita maxima OX=3661 GN=LOC111490225 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 1  MAQLMGGSLFSTAPGGFHPSKADCISVSIFRVSGELLQDIWLDELGAKASEIHGNSIACN 60
          MA+LMGGSLFS+A G F PSK + ++ +  R+SG +   ++  ELGAKASE+HGN IA N
Sbjct: 1  MARLMGGSLFSSATGAFQPSKTESVA-NYCRISGPVKLHLF-QELGAKASELHGNGIASN 60

Query: 61 MASVLRSNKKS 72
           A VLRSNK S
Sbjct: 61 RAGVLRSNKNS 69

[Close]

BLAST of CmaCh13G007980 vs. NCBI nr
Match: XP_023000992.1 (argininosuccinate synthase, chloroplastic [Cucurbita maxima])

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MAQLMGGSLFSTAPGGFHPSKADCISVSIFRVSGELLQDIWLDELGAKASEIHGNSIACN 60
          MAQLMGGSLFSTAPGGFHPSKA+ ++ S  R+SG      +  ELGAKASEIHGNSIACN
Sbjct: 1  MAQLMGGSLFSTAPGGFHPSKAESVA-SYCRISGSTKLHSF-QELGAKASEIHGNSIACN 60

Query: 61 MASVLRSNKKS 72
          MASVLRSNKKS
Sbjct: 61 MASVLRSNKKS 69

[Close]

BLAST of CmaCh13G007980 vs. NCBI nr
Match: XP_023519539.1 (argininosuccinate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.1 bits (240), Expect = 8.2e-17
Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1  MAQLMGGSLFSTAPGGFHPSKADCISVSIFRVSGELLQDIWLDELGAKASEIHGNSIACN 60
          MAQLMGGSLFSTAPGGFHPSKA+ ++ S  R+SG      +  ELGAKASEIHGNSIACN
Sbjct: 1  MAQLMGGSLFSTAPGGFHPSKAESVA-SYCRISGPTKLHSF-QELGAKASEIHGNSIACN 60

Query: 61 MASVLRSNKKS 72
           ASVLRSNKKS
Sbjct: 61 RASVLRSNKKS 69

[Close]

BLAST of CmaCh13G007980 vs. NCBI nr
Match: XP_022923631.1 (argininosuccinate synthase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-16
Identity = 52/71 (73.24%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 1  MAQLMGGSLFSTAPGGFHPSKADCISVSIFRVSGELLQDIWLDELGAKASEIHGNSIACN 60
          MAQLMGG LFSTAPGGFHPSKA+ ++ S  R+SG      +  ELGAKASEIHGNSIACN
Sbjct: 1  MAQLMGGFLFSTAPGGFHPSKAESVA-SYCRISGPTKLHSF-QELGAKASEIHGNSIACN 60

Query: 61 MASVLRSNKKS 72
           ASVLRSNKKS
Sbjct: 61 RASVLRSNKKS 69

[Close]

BLAST of CmaCh13G007980 vs. NCBI nr
Match: KAG6584145.1 (Argininosuccinate synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 9.1e-16
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 1  MAQLMGGSLFSTAPGGFHPSKADCISVSIFRVSGELLQDIWLDELGAKASEIHGNSIACN 60
          MAQLMGGSLFSTAPGGFHP +A+ ++ S  R+SG      +  ELGAKASEIHGNSIACN
Sbjct: 1  MAQLMGGSLFSTAPGGFHPFRAELVA-SYCRISGPTKLHSF-QELGAKASEIHGNSIACN 60

Query: 61 MASVLRSNKKS 72
           ASVLRSNKKS
Sbjct: 61 RASVLRSNKKS 69

[Close]

BLAST of CmaCh13G007980 vs. NCBI nr
Match: KAG7019736.1 (Argininosuccinate synthase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 4.5e-15
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 1  MAQLMGGSLFSTAPGGFHPSKADCISVSIFRVSGELLQDIWLDELGAKASEIHGNSIACN 60
          MAQLMGGSLFSTAPGGFHPS+   +  S  R+SG      +  ELGAKASEIHGNSIACN
Sbjct: 1  MAQLMGGSLFSTAPGGFHPSE---LVASYCRISGPTKLHSF-QELGAKASEIHGNSIACN 60

Query: 61 MASVLRSNKKS 72
           ASVLRSNKKS
Sbjct: 61 RASVLRSNKKS 67

The following BLAST results are available for this feature:

BLAST of CmaCh13G007980 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G007980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KF74	6.1e-18	76.06	Citrulline--aspartate ligase OS=Cucurbita maxima OX=3661 GN=LOC111495262 PE=3 SV...	[more]
A0A6J1E7A9	2.0e-16	73.24	Citrulline--aspartate ligase OS=Cucurbita moschata OX=3662 GN=LOC111431281 PE=3 ...	[more]
A0A6J1GSL4	3.3e-11	59.15	Citrulline--aspartate ligase OS=Cucurbita moschata OX=3662 GN=LOC111457148 PE=3 ...	[more]
A0A0A0LWM9	9.5e-11	60.00	Citrulline--aspartate ligase OS=Cucumis sativus OX=3659 GN=Csa_1G050400 PE=3 SV=...	[more]
A0A6J1K5F5	1.2e-10	57.75	Citrulline--aspartate ligase OS=Cucurbita maxima OX=3661 GN=LOC111490225 PE=3 SV...	[more]

BLAST of CmaCh13G007980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000992.1	1.3e-17	76.06	argininosuccinate synthase, chloroplastic [Cucurbita maxima]	[more]
XP_023519539.1	8.2e-17	74.65	argininosuccinate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923631.1	4.1e-16	73.24	argininosuccinate synthase, chloroplastic-like [Cucurbita moschata]	[more]
KAG6584145.1	9.1e-16	71.83	Argininosuccinate synthase, chloroplastic, partial [Cucurbita argyrosperma subsp...	[more]
KAG7019736.1	4.5e-15	71.83	Argininosuccinate synthase, chloroplastic [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of CmaCh13G007980 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G007980.1	CmaCh13G007980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006526	arginine biosynthetic process
biological_process	GO:0000053	argininosuccinate metabolic process
biological_process	GO:0000050	urea cycle
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004055	argininosuccinate synthase activity
molecular_function	GO:0005524	ATP binding