CmaCh13G006480 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G006480
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA ligase 1
Location	Cma_Chr13: 6113864 .. 6116047 (-)
RNA-Seq Expression	CmaCh13G006480
Synteny	CmaCh13G006480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCGCGCTTCGGCAGGATATTTATAAGTATCGGTAATTCAAAATTCCAAACGCTTCGAAATAGTACGGTTCTCGATCTCTTTTCTTCAACTTCGATCCAGATGGGGAACATGAAAATACCTATTGCGAAAACAAGAACCAGGAAGCGAGTCTCTGACCCCGATCTCACAAGCTCCGATAAAAGGAAGCGGACCAACGAAGATATCGATCTCGATCTCGATCTATCCGAGTACGTACTATTTTCCATTTCTGTTCCATTTTCGAGTGTTATTCTGGAGAACCTTGACAGTGATATTTACGGTATGCAGCGATCTCAAAGGGATAGTGTCCGCGCTGAATCAGATCAAAGAGAGAGCTCAGAAGGACGATCAGAAGAAGAATGAAGAGACTATCTCAAGGTAATTTGAGTGGTTTTGTTCGTTTGGAACTTATTGGTGATTAGTTAAGTGAATGGAGCGACTGAAATTGTGTGTTGTTGTGTGCTTATTTCCCATTCTCGAATTTCTATATACGGCTGCTCGTTTGCACCTTCACTTTCCTTCTTCTGGTAGATTTGAACTGACCTCACTGGTAATTTAATTTTATAATGTGCTTGATTTGATTTATTATAAAATTGAAATGATAACCTGATCAAACTTAGCTTACTGGATTGGACTTCAACCGTCTCACCGTTCCTATTCGAACATTTGGTCGTTTTCCAACTTCCATCCATTCCACTTTTTAACGACAGAGGAGTTCATTCATTTTCTGAGCTAATACTCTTCTTCTTGTCCTGCACTATTAAGATGTTTGAATGTTAATTAATTGCATTTTATTGACAGTGTATCGACTGAGATAAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGTAGGTTTCAGAAACGAGTTCACGATGTTGCTCGCTTAGATTTTTTGTTGAAGTAGTTGTAAGCGAATGAAAGCAATTTGTTTCTTCCAACCAATTTCAGGCAAAGTTTTGCGAAAGCACTATCGAAAAGCTCAAAAGAGGTTGGTGGGAACAGGATTCGAAATAGAGACCATTCAAGAGCAAATTTGAAGTCATTGCATAATTTTTTTTTTCTTCTAGTTTCATTGTATTAATGAATCTTTCAGATGTTGCGTTAAAATCAATATGGCTTCGTTGCAGTGTGAAAACTGTTTGAAGGACGAAACTGCCAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCGACACATCTCCAGGCCATGAAAGGTAATATCCACTTCGAGTATTATGGTGAAAAGTTACGCATTATTTTCTCCCTAATTCTGTTTAGACTAATTGTCATTTTATTTATCAAATATCAACTGGTGCGATGCCTTTATAATGCACGATCAAATCTCTATCATGCTGTATAATTTTCCATTATCAAATATCAACTGTACAATGCCTTTGTAAGAATCCTCGGTATCTGAGAGACATCATCGTGCTGATCAGTGGCAATTGAAGCATTGACCATGGAGTTAGGTCCTCAACAACGATGTGTTCCATCAATACTGTTTGCCTTCTTGGAATCCTTTCCGCAAATATTTCTCATGTGTATCGGTATTGAAGAACCTCACTTTTTGGTTGAACATAACAGGTTTATTTTAGTTAACTACTATCAATCTGGCAAATATTCTGGTATATTGACACTGGGCCTATAATCTTAAACCATTCTAGCTCTAAGAAAACCCACTCACACACTTTTTCTGTTTATGTTTTCAATTTCGGATGCTGCTTGGCTTTGGCAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGTAAGCAAGAAGTTATGCATCAATCAGCACCAAACGCTTTATTATTATCTATTTCCGTTCGTATTTGTGACAGGAAAGAGAGAAAGGAGCCTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGGAGTCTTTGAAAAGGAAAAAGCAGGTATACGACCTGTAATTCATAAAATTTGCACAAACGCCTTCCCCCTTCTATGCCAATGGGCACCTTAATTATACACTTGGGTCTGGAACACAGGATGATAGGACTTTCAGCCTTTTGCGGAAGACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAACTGATGATTGA

mRNA sequence

ATGCAATCGCGCTTCGGCAGGATATTTATAAGTATCGGTAATTCAAAATTCCAAACGCTTCGAAATAGTACGGTTCTCGATCTCTTTTCTTCAACTTCGATCCAGATGGGGAACATGAAAATACCTATTGCGAAAACAAGAACCAGGAAGCGAGTCTCTGACCCCGATCTCACAAGCTCCGATAAAAGGAAGCGGACCAACGAAGATATCGATCTCGATCTCGATCTATCCGACGATCTCAAAGGGATAGTGTCCGCGCTGAATCAGATCAAAGAGAGAGCTCAGAAGGACGATCAGAAGAAGAATGAAGAGACTATCTCAAGTGTATCGACTGAGATAAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCGAAAGCACTATCGAAAAGCTCAAAAGAGTGTGAAAACTGTTTGAAGGACGAAACTGCCAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCGACACATCTCCAGGCCATGAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAGCCTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGGAGTCTTTGAAAAGGAAAAAGCAGGATGATAGGACTTTCAGCCTTTTGCGGAAGACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAACTGATGATTGA

Coding sequence (CDS)

ATGCAATCGCGCTTCGGCAGGATATTTATAAGTATCGGTAATTCAAAATTCCAAACGCTTCGAAATAGTACGGTTCTCGATCTCTTTTCTTCAACTTCGATCCAGATGGGGAACATGAAAATACCTATTGCGAAAACAAGAACCAGGAAGCGAGTCTCTGACCCCGATCTCACAAGCTCCGATAAAAGGAAGCGGACCAACGAAGATATCGATCTCGATCTCGATCTATCCGACGATCTCAAAGGGATAGTGTCCGCGCTGAATCAGATCAAAGAGAGAGCTCAGAAGGACGATCAGAAGAAGAATGAAGAGACTATCTCAAGTGTATCGACTGAGATAAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCGAAAGCACTATCGAAAAGCTCAAAAGAGTGTGAAAACTGTTTGAAGGACGAAACTGCCAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCGACACATCTCCAGGCCATGAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAGCCTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGGAGTCTTTGAAAAGGAAAAAGCAGGATGATAGGACTTTCAGCCTTTTGCGGAAGACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAACTGATGATTGA

Protein sequence

MQSRFGRIFISIGNSKFQTLRNSTVLDLFSSTSIQMGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQKDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD

Homology

[Close]

BLAST of CmaCh13G006480 vs. ExPASy TrEMBL
Match: A0A6J1KJH3 (DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.7e-106
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 36  MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 95
           MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 96  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 155
           KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 156 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 215
           LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 216 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 252
           ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]

BLAST of CmaCh13G006480 vs. ExPASy TrEMBL
Match: A0A6J1EL64 (DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 7.2e-104
Identity = 213/216 (98.61%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 36  MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 95
           MGNMKIPIAKTRTRKRVSD DLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ
Sbjct: 1   MGNMKIPIAKTRTRKRVSDSDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 96  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 155
           KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 156 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 215
           LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 216 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 252
           ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDF  DD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

[Close]

BLAST of CmaCh13G006480 vs. ExPASy TrEMBL
Match: A0A6J1CEE2 (DNA ligase 1 OS=Momordica charantia OX=3673 GN=LOC111010912 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 7.0e-99
Identity = 200/216 (92.59%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 36  MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 95
           MGN+KIP AKTRTRKRVSDPDLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQ
Sbjct: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60

Query: 96  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 155
           KDDQKKNEETISSVS+EIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 156 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 215
           L+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLE
Sbjct: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180

Query: 216 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 252
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDFP +D
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216

[Close]

BLAST of CmaCh13G006480 vs. ExPASy TrEMBL
Match: A0A0A0LRW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.9e-97
Identity = 198/216 (91.67%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 36  MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 95
           MGN+KIP AKTR+RKRVSD DL+SSD+RK+TN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 96  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 155
           KDD KKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 156 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 215
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 216 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 252
           ESLKRKKQDD+TFSLLRKTLGSFL+TGSDEDFP DD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of CmaCh13G006480 vs. ExPASy TrEMBL
Match: A0A5D3DS94 (DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00780 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 5.6e-96
Identity = 197/216 (91.20%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 36  MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 95
           M N+KIP AKTR+RKRVSD DLTSS++R RTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 96  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 155
           KDD KKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 156 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 215
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 216 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 252
           ESLKRKKQDD+TFSLLRKTLGSFL+TGSDEDFP DD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of CmaCh13G006480 vs. NCBI nr
Match: XP_023001751.1 (DNA ligase 1 [Cucurbita maxima])

HSP 1 Score: 394.8 bits (1013), Expect = 5.5e-106
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 36  MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 95
           MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 96  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 155
           KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 156 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 215
           LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 216 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 252
           ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]

BLAST of CmaCh13G006480 vs. NCBI nr
Match: XP_022927498.1 (DNA ligase 1 [Cucurbita moschata] >KAG6583999.1 hypothetical protein SDJN03_19931, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019621.1 hypothetical protein SDJN02_18584, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 386.7 bits (992), Expect = 1.5e-103
Identity = 213/216 (98.61%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 36  MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 95
           MGNMKIPIAKTRTRKRVSD DLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ
Sbjct: 1   MGNMKIPIAKTRTRKRVSDSDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 96  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 155
           KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 156 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 215
           LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 216 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 252
           ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDF  DD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

[Close]

BLAST of CmaCh13G006480 vs. NCBI nr
Match: XP_023520366.1 (DNA ligase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383.3 bits (983), Expect = 1.7e-102
Identity = 211/216 (97.69%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 36  MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 95
           MGNMKIPIAKTRTRKRVS+ DLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ
Sbjct: 1   MGNMKIPIAKTRTRKRVSESDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 96  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 155
           KDDQKKNEETISSVSTEIR MIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRAMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 156 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 215
           LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 216 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 252
           ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDF  DD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

[Close]

BLAST of CmaCh13G006480 vs. NCBI nr
Match: XP_022140180.1 (DNA ligase 1 [Momordica charantia] >XP_022140181.1 DNA ligase 1 [Momordica charantia] >XP_022140182.1 DNA ligase 1 [Momordica charantia])

HSP 1 Score: 370.2 bits (949), Expect = 1.4e-98
Identity = 200/216 (92.59%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 36  MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 95
           MGN+KIP AKTRTRKRVSDPDLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQ
Sbjct: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60

Query: 96  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 155
           KDDQKKNEETISSVS+EIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 156 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 215
           L+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLE
Sbjct: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180

Query: 216 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 252
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDFP +D
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216

[Close]

BLAST of CmaCh13G006480 vs. NCBI nr
Match: XP_004146600.1 (DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X1 [Cucumis sativus] >KGN64675.1 hypothetical protein Csa_013771 [Cucumis sativus])

HSP 1 Score: 364.8 bits (935), Expect = 6.1e-97
Identity = 198/216 (91.67%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 36  MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 95
           MGN+KIP AKTR+RKRVSD DL+SSD+RK+TN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 96  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 155
           KDD KKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 156 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 215
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 216 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 252
           ESLKRKKQDD+TFSLLRKTLGSFL+TGSDEDFP DD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of CmaCh13G006480 vs. TAIR 10
Match: AT2G33793.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 229.6 bits (584), Expect = 2.8e-60
Identity = 127/212 (59.91%), Postives = 171/212 (80.66%), Query Frame = 0


Query: 43  IAKTRTRKRVSDPDLTSSDKRKRTNEDI--DLDLDLSDDLKGIVSALNQIKERAQKDDQK 102
           ++ TR   + + P+   S K+      +  +LD+D+S D KGI+SAL Q +E+A +D +K
Sbjct: 1   MSSTRRGTKRTRPEPPQSLKKPTPKAKLPDELDVDVSSDFKGIMSALQQFREKAHEDGRK 60

Query: 103 KNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALYEKF 162
           K EE+ISSVSTE+++ I+E+KSK EK+RQ+F+KALSKSSKECEN LKDE AKF+ L++KF
Sbjct: 61  KKEESISSVSTEVKSKIDELKSKLEKERQNFSKALSKSSKECENILKDEAAKFEELHKKF 120

Query: 163 TKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKR 222
            K+KA HLQ +KDTISKFEE+KERL+ +YEQLRK+E+++I+EQEK C EK+AQLEESLK+
Sbjct: 121 VKDKADHLQGLKDTISKFEEDKERLYMRYEQLRKKEKTMITEQEKFCTEKLAQLEESLKK 180

Query: 223 KKQDDRTFSLLRKTLGSFLET-GSDEDFPTDD 252
           KK+ D+TFS+LRKTLGSFLE   SDE+FP D+
Sbjct: 181 KKRGDKTFSILRKTLGSFLENEASDEEFPPDE 212

The following BLAST results are available for this feature:

BLAST of CmaCh13G006480 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G006480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJH3	2.7e-106	100.00	DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1	[more]
A0A6J1EL64	7.2e-104	98.61	DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1	[more]
A0A6J1CEE2	7.0e-99	92.59	DNA ligase 1 OS=Momordica charantia OX=3673 GN=LOC111010912 PE=4 SV=1	[more]
A0A0A0LRW7	2.9e-97	91.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1	[more]
A0A5D3DS94	5.6e-96	91.20	DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmaCh13G006480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001751.1	5.5e-106	100.00	DNA ligase 1 [Cucurbita maxima]	[more]
XP_022927498.1	1.5e-103	98.61	DNA ligase 1 [Cucurbita moschata] >KAG6583999.1 hypothetical protein SDJN03_1993...	[more]
XP_023520366.1	1.7e-102	97.69	DNA ligase 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022140180.1	1.4e-98	92.59	DNA ligase 1 [Momordica charantia] >XP_022140181.1 DNA ligase 1 [Momordica chara...	[more]
XP_004146600.1	6.1e-97	91.67	DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X...	[more]

BLAST of CmaCh13G006480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33793.1	2.8e-60	59.91	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 168..202
None	No IPR available	COILS	Coil	Coil	coord: 204..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..64
None	No IPR available	PANTHER	PTHR35295	DNA LIGASE-LIKE PROTEIN	coord: 45..251
None	No IPR available	PANTHER	PTHR35295:SF1	DNA LIGASE-LIKE PROTEIN	coord: 45..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G006480.1	CmaCh13G006480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0099086	synaptonemal structure
molecular_function	GO:0016874	ligase activity