CmaCh13G006470 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G006470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LOL2
Location	Cma_Chr13: 6109444 .. 6113368 (+)
RNA-Seq Expression	CmaCh13G006470
Synteny	CmaCh13G006470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGAGAAAGGAATTGAGAAGTTGGTGCGCCAATAGTTCGCATCAGCGCGGGACGCCCAACGCCATAGTGGTACACAAACAGTACTCCCATGCCATAGAAGAGCATGATCAGTTCATAGCCGACTGATCGAGAGAATGGAAATCCATGAAATCGAGAAAGACGAAGATGACGGACCTCCTCCTGGATGGGAACCCATCACCCCACCGTTGCCGCAACAGCCGCCGCAGCCACTTTCTTGTGAGTGCTTCCGAGTTTAATTTCAGATTTTGCGATGAGTATATTTCGTCTACAATTCGGTCCGGTATCCTTCTGATGCCTATTCGTTAGTTGGCCCGTCCTGAAATCGAAGGAATTATTTGTTTATATGGATTATAAGTTGTCGTCTCTCTCTCTCGAATTACTTTCTCCTACTCAAATTTAGTTCTCTTTTTGTCTTTCAAAACTAATTGTGTTTGCGAATCTTCGTCTTGGTTATTTCATGTCTCTAATTATTTCCCATCACTGGCTATTTATACATCTGATTGAGCTTCTGACGTGAGCGAATCGATAGGTGGATTCTTCCCATAGCTTATAACGGTGAATAAGTTGTCCAATTCAATTCTTTGCAGTGTGCTTTATTAATCTATTGAAACAGTTGTAGTTCACCCCTAGTTTCAGTTCATGGAATCAACAAAAGCGCATAGAAATTAGAGCATTCTTGTTAGCATGTTTTATTGGAAGTCCCAAATATTGTCAATGTATGCATTTAAAATCTTGTCAATGGAGACGTTTTGATCTGCAGCTGATATGGCCCAAATGGTTTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTGAAGGGAGCTAGATATGTTCAGTGCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGGTTCCTTCTCTTTTCCTTCAGTCTTTTTAGTTTTTACTATTATTTTCTTCCTTGAAAGTTGTCTTGTTCATATGCTGTTAGCTTTTTCCTAATCTTTAAGAAGAATCCCACCTATGTTGGTTTCGAAGTACCATTAGCACTTCCCAAACTTTATGCTCTTCAAATCTGTTTTCTTCCTACTGGGTCCTCTTTCATTAGAGGGTCAAGTTTTCGGCAGCATTTTTGAATATCTGTTTCTTGTAGTAGTGCTCGGTGGTGCCTGTATACCACATTCTGAGCTATATGTAATATTTGAGGGAATTGGTTATAGAGATAAATGAATTGCATTACGTGATTGTGCCTGGGCCTCTAAGCATCTATGTGATGTCTCATATTGGTTGGAGAGGAAAACAAACCACCATTTATAAGGGTGTGAAAACCTTCCCCTAGCAGACACGTTTTAAAGCCTTGAGGGGAAGCCCAAAAAGGACAATATCTGCTAGCAGTGGATCTGAGCCGTTACAAATGGTATCAGAGCCAGACACTGGATGATGTGCCAGCCTTCTCGCTGTTTCCCGAAGGGGGTAGACATGAGGCGGTGTGCTAGGAATGACGCTAGCCTCAAAGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAGCAAACCACCATTTATGAGGGTGTGGAAACCTTCCCCTGGCAGGCGCGTTTTAAAGCCTTAAGGGGAAGCCCGAAAGGAAAGCTCAAAGAGGACAATATCTGCTAGTGGTGGATCTGGGCCGTTACAATCTATCTTCTACATAAAACCAAATGTTGTAGGTTCTACGATATTTCTCAACTGGGTTATAGATGATTTATGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTATGGAAACCTCTCTTTGGCAGATGCGTTTTAAAAATCTCGAGAGGAAGCCTGAAAATGAAAGCGCAAAGAGGACAATATTTGCTAGTGGTGGGCTTGGACTCTTACATAAAGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAAATCTTGAGGGGAAGCCCGAAAATGAAAACGCAAAGAGGACAATATCTGCCAGCGATGGGCTTGGACTCTTACACTGCTGGTCAATTGAAAGCGCAAAGAAGACAATATCTGCTAGCGGTGGGCTTGGACTCTTACATAAAGATGTGGAAACCTCTCCCTGGCAGATGCGTTTTAAAAATCTTGAGGGGAAGCCCGAAAATGAAAGCGCAAAGAGGACAATATCTGCCAGCGGTGGGCTTGGACTCTTACACAGCTGGTTAATTGAAAGCGCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGACTCTTACATAAGGGTGTGGAAACCTCTCCCCCTGGCAGATGCGTTTTAAAAATCTTGAGGGGAAGCCCGAAAATGAAAGCGCAAAGAGGACAATATCTGCCAGCGGTGGGCTTGGACTCTCACACTGCTGGTCAATTTTCTCTTCCTCGAATTGGGAACAGGGGATGTAACCGGAATGTATTGTAAAAAAAAATGAAATTCATGTTTAGAAGAAACGTACTTGAGCAAAAATGATTTGCCAGTTCACGTCGTCCCTGAGCCCCAGATTTCTTGATCTAGTTTGTTGTTTTTTCATGATTCACTATATTAACTTAATAGATTCAGTCTTTCTAACGACTTTCCGTCAAAGTCTTATAATACCATTTTTCCTTGTGTTAACGCCTGTACATTCTCTTTCTAGCGCACGAAGTTGGACAAGTGAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTTGTGTGACAGAAATTGGGGTATGTCAATCCACTTTCTGGCAAAGTTATTGCTTGGAATATGCTTAGATATGTACAGTACAGTCTCAATCTTTCTGGTTGTCTCATTCATTCACTATGTTGAAGCACGATTTGCTGGAAACTAGATGTTTCTTTAGTCATTGGGTGCGAAATTTATGCCCTTTCAAAAATGAACACAGAAGCATAAAGCATGGATGTGGTGAAATTACTCCTTTGCATCAGTCCATGTGTTGGCAATTATATAACTGCTGTAATTTTCATTGCCAAGAAGCATGGAGCAGGAATTATATGTGAGATTCTACATCGGTTGGAGGGAGAGGGAAATGAAACACTCTTTATAAGGGTGTGAAAATCTCTCTCTAACAGAAAGGGGTCATTTTAGACCATATTTACAAAATTTTGACATACAATTAAAAAAAAAAAGTCCCTTTTTTAAAGTACGAAGATCAAAATGGACATTTTGTAAGTACATGAACCAGTTAGGAACCAAATTGAACCAAAACTGACCAAAGTAGTATTTGTATGTGTGTGGATCTTTATTATGCTTTTGTTGCGAGTTCTTCATATTCTATAGAAATAAGGGTGTTGGTTAGTGTAATTTGCACTGTTTCTTTGCTTTGGTGCTCGATTACTTCATTAATTGTATGAATGAGAAATCATGCCCATTAAATGTAGCCTCTGACGGATTTAAGTGGCTGTGCAGGTGCATAACAGACGCCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACAAACTCTGTGCAGTAGAGTCTGTTCATGTATGATATAATTCTGCGTAGGAAAAGATGTGACATTTTGTGAAGTTTTCTTTTCCGTTGCAGCCTTAATCAGAACACAGAGAAGGAGATCAACATTATTATCACAGGCACTTTTATTTCTTTATTGAAAGAAACATAGGAACTGACCTTCCCAACTTCTAACGTGTTTTTATCTCAAGTTTGCCTTGTGACTTGACTTCCTGCTTATATTCATTTTCTATGCTGCTCATTGGATCCTTACTAGGTGCTGCCAACCTTTGAGATGTTCTTCATTGTAAATGATTATCTTACGAAGTTGAAGCAGCATTGAGGACTAAATTTTGTCTAAATTCTACAATTTTGGCTTTTCCTTAGCCGCAGGGTTTGGTTTTAATGAACGGCAAGTCGGG

mRNA sequence

GCCGAGAAAGGAATTGAGAAGTTGGTGCGCCAATAGTTCGCATCAGCGCGGGACGCCCAACGCCATAGTGGTACACAAACAGTACTCCCATGCCATAGAAGAGCATGATCAGTTCATAGCCGACTGATCGAGAGAATGGAAATCCATGAAATCGAGAAAGACGAAGATGACGGACCTCCTCCTGGATGGGAACCCATCACCCCACCGTTGCCGCAACAGCCGCCGCAGCCACTTTCTTCTGATATGGCCCAAATGGTTTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTGAAGGGAGCTAGATATGTTCAGTGCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGCGCACGAAGTTGGACAAGTGAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTTGTGTGACAGAAATTGGGGTGCATAACAGACGCCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACAAACTCTGTGCAGTAGAGTCTGTTCATGTATGATATAATTCTGCGTAGGAAAAGATGTGACATTTTGTGAAGTTTTCTTTTCCGTTGCAGCCTTAATCAGAACACAGAGAAGGAGATCAACATTATTATCACAGGCACTTTTATTTCTTTATTGAAAGAAACATAGGAACTGACCTTCCCAACTTCTAACGTGTTTTTATCTCAAGTTTGCCTTGTGACTTGACTTCCTGCTTATATTCATTTTCTATGCTGCTCATTGGATCCTTACTAGGTGCTGCCAACCTTTGAGATGTTCTTCATTGTAAATGATTATCTTACGAAGTTGAAGCAGCATTGAGGACTAAATTTTGTCTAAATTCTACAATTTTGGCTTTTCCTTAGCCGCAGGGTTTGGTTTTAATGAACGGCAAGTCGGG

Coding sequence (CDS)

ATGGAAATCCATGAAATCGAGAAAGACGAAGATGACGGACCTCCTCCTGGATGGGAACCCATCACCCCACCGTTGCCGCAACAGCCGCCGCAGCCACTTTCTTCTGATATGGCCCAAATGGTTTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTGAAGGGAGCTAGATATGTTCAGTGCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGCGCACGAAGTTGGACAAGTGAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTTGTGTGACAGAAATTGGGGTGCATAACAGACGCCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACAAACTCTGTGCAGTAG

Protein sequence

MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

Homology

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BLAST of CmaCh13G006470 vs. ExPASy Swiss-Prot
Match: O65426 (Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.9e-34
Identity = 71/126 (56.35%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 5   EIEKDEDDGPPPGWEPITPPLP------QQPPQPLSSDM---AQMVCGTCRRLLKYLKGA 64
           E E++E++GPPPGWE    P P         P P + ++   AQMVCG+CRRLL YL+G+
Sbjct: 17  EEEEEEEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGS 76

Query: 65  RYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPP 122
           ++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC  VT+I  +N+RPP
Sbjct: 77  KHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of CmaCh13G006470 vs. ExPASy Swiss-Prot
Match: Q704V3 (Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-27
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 20  PITPPLPQQPPQP-LSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQV 79
           P+ PP    PP P L+ ++ QMVCG+CR LL Y +GA YV C+CC T+NYVLEAHEVG+V
Sbjct: 54  PLVPP----PPSPYLNKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEVGKV 113

Query: 80  KCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 121
            CG CA LLMYP+GA +V+CS C  VTEIG  N R   S++Q
Sbjct: 114 HCGHCATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSIEQ 151

[Close]

BLAST of CmaCh13G006470 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-20
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 32  PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPY 91
           P  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY Y
Sbjct: 66  PPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQY 125

Query: 92  GASSVRCSSCTCVTEIG 109
           GA SV+C+ C  VT +G
Sbjct: 126 GARSVKCAVCNFVTSVG 142

[Close]

BLAST of CmaCh13G006470 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-20
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 30  PQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY 89
           P P  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY
Sbjct: 96  PAP-GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMY 155

Query: 90  PYGASSVRCSSCTCVTEIG 109
            YGA SV+C+ C  VT +G
Sbjct: 156 QYGARSVKCAVCNFVTSVG 173

[Close]

BLAST of CmaCh13G006470 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-19
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 29  PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVK 88
           PP P   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ 
Sbjct: 40  PPPPPPHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQIN 99

Query: 89  CGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ--GQAAPPTNS 130
           CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+ S
Sbjct: 100 CGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTS 151

[Close]

BLAST of CmaCh13G006470 vs. ExPASy TrEMBL
Match: A0A6J1KRG9 (protein LOL2 OS=Cucurbita maxima OX=3661 GN=LOC111495801 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.9e-71
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTNSVQ
Sbjct: 121 GQAAPPTNSVQ 131

[Close]

BLAST of CmaCh13G006470 vs. ExPASy TrEMBL
Match: A0A6J1EMN3 (protein LOL2 OS=Cucurbita moschata OX=3662 GN=LOC111433966 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.4e-71
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MEIHEIEKDEDDGPPPGWEPITPPLPQ PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTNSVQ
Sbjct: 121 GQAAPPTNSVQ 131

[Close]

BLAST of CmaCh13G006470 vs. ExPASy TrEMBL
Match: A0A0A0LXE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.0e-64
Identity = 120/131 (91.60%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           M++HEIEKDEDDGPPPGWEPITP LP  PP  LSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTN VQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of CmaCh13G006470 vs. ExPASy TrEMBL
Match: A0A5A7UQS3 (Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001680 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.0e-62
Identity = 118/131 (90.08%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           M++HEIEKDEDDGPPPGWEPITP LP  P   LS DMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           S CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTN VQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of CmaCh13G006470 vs. ExPASy TrEMBL
Match: A0A1S3B6Q2 (protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.0e-62
Identity = 118/131 (90.08%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           M++HEIEKDEDDGPPPGWEPITP LP  P   LS DMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           S CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTN VQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of CmaCh13G006470 vs. NCBI nr
Match: XP_023001758.1 (protein LOL2 [Cucurbita maxima])

HSP 1 Score: 278.1 bits (710), Expect = 3.9e-71
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTNSVQ
Sbjct: 121 GQAAPPTNSVQ 131

[Close]

BLAST of CmaCh13G006470 vs. NCBI nr
Match: XP_022927005.1 (protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo subsp. pepo] >KAG6583998.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019620.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.8 bits (704), Expect = 1.9e-70
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MEIHEIEKDEDDGPPPGWEPITPPLPQ PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTNSVQ
Sbjct: 121 GQAAPPTNSVQ 131

[Close]

BLAST of CmaCh13G006470 vs. NCBI nr
Match: XP_004146601.1 (protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_013266 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 1.0e-63
Identity = 120/131 (91.60%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           M++HEIEKDEDDGPPPGWEPITP LP  PP  LSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTN VQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of CmaCh13G006470 vs. NCBI nr
Match: XP_011653178.1 (protein LOL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 2.5e-62
Identity = 120/132 (90.91%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSS-DMAQMVCGTCRRLLKYLKGARYVQ 60
           M++HEIEKDEDDGPPPGWEPITP LP  PP  LSS DMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQ 120
           CSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSV 
Sbjct: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH 120

Query: 121 QGQAAPPTNSVQ 132
           QGQAAPPTN VQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]

BLAST of CmaCh13G006470 vs. NCBI nr
Match: XP_008442544.1 (PREDICTED: protein LOL2 isoform X4 [Cucumis melo] >KAA0056987.1 protein LOL2 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 118/131 (90.08%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           M++HEIEKDEDDGPPPGWEPITP LP  P   LS DMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           S CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTN VQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of CmaCh13G006470 vs. TAIR 10
Match: AT4G21610.1 (lsd one like 2 )

HSP 1 Score: 144.4 bits (363), Expect = 6.3e-35
Identity = 71/126 (56.35%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 5   EIEKDEDDGPPPGWEPITPPLP------QQPPQPLSSDM---AQMVCGTCRRLLKYLKGA 64
           E E++E++GPPPGWE    P P         P P + ++   AQMVCG+CRRLL YL+G+
Sbjct: 17  EEEEEEEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGS 76

Query: 65  RYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPP 122
           ++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC  VT+I  +N+RPP
Sbjct: 77  KHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of CmaCh13G006470 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-21
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 32  PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPY 91
           P  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY Y
Sbjct: 66  PPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQY 125

Query: 92  GASSVRCSSCTCVTEIG 109
           GA SV+C+ C  VT +G
Sbjct: 126 GARSVKCAVCNFVTSVG 142

[Close]

BLAST of CmaCh13G006470 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-21
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 32  PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPY 91
           P  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY Y
Sbjct: 99  PPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQY 158

Query: 92  GASSVRCSSCTCVTEIG 109
           GA SV+C+ C  VT +G
Sbjct: 159 GARSVKCAVCNFVTSVG 175

[Close]

BLAST of CmaCh13G006470 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-21
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 32  PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPY 91
           P  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY Y
Sbjct: 66  PPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQY 125

Query: 92  GASSVRCSSCTCVTEIG 109
           GA SV+C+ C  VT +G
Sbjct: 126 GARSVKCAVCNFVTSVG 142

[Close]

BLAST of CmaCh13G006470 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 97.4 bits (241), Expect = 8.8e-21
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 29  PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVK 88
           PP P   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ 
Sbjct: 40  PPPPPPHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQIN 99

Query: 89  CGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ--GQAAPPTNS 130
           CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+ S
Sbjct: 100 CGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTS 151

The following BLAST results are available for this feature:

BLAST of CmaCh13G006470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65426	8.9e-34	56.35	Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1	[more]
Q704V3	1.6e-27	58.82	Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1	[more]
Q93ZB1	1.5e-20	57.14	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	9.5e-20	55.70	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
P94077	1.2e-19	43.75	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of CmaCh13G006470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRG9	1.9e-71	100.00	protein LOL2 OS=Cucurbita maxima OX=3661 GN=LOC111495801 PE=4 SV=1	[more]
A0A6J1EMN3	9.4e-71	99.24	protein LOL2 OS=Cucurbita moschata OX=3662 GN=LOC111433966 PE=4 SV=1	[more]
A0A0A0LXE3	5.0e-64	91.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1	[more]
A0A5A7UQS3	8.0e-62	90.08	Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3B6Q2	8.0e-62	90.08	protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1	[more]

BLAST of CmaCh13G006470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001758.1	3.9e-71	100.00	protein LOL2 [Cucurbita maxima]	[more]
XP_022927005.1	1.9e-70	99.24	protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo s...	[more]
XP_004146601.1	1.0e-63	91.60	protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_0...	[more]
XP_011653178.1	2.5e-62	90.91	protein LOL2 isoform X1 [Cucumis sativus]	[more]
XP_008442544.1	1.6e-61	90.08	PREDICTED: protein LOL2 isoform X4 [Cucumis melo] >KAA0056987.1 protein LOL2 iso...	[more]

BLAST of CmaCh13G006470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21610.1	6.3e-35	56.35	lsd one like 2	[more]
AT1G32540.2	1.0e-21	57.14	lsd one like 1	[more]
AT1G32540.1	1.0e-21	57.14	lsd one like 1	[more]
AT1G32540.3	1.0e-21	57.14	lsd one like 1	[more]
AT4G20380.2	8.8e-21	43.75	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 42..66 e-value: 3.4E-7 score: 30.0 coord: 80..102 e-value: 1.1E-9 score: 37.9
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 77..106 e-value: 2.7E-11 score: 40.9 coord: 39..69 e-value: 3.6E-13 score: 46.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR31747:SF17	PROTEIN LOL2	coord: 24..126
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 24..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G006470.1	CmaCh13G006470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005634	nucleus