CmaCh13G005390 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G005390
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionEndosomal targeting BRO1-like domain-containing protein
LocationCma_Chr13: 5609456 .. 5613321 (-)
RNA-Seq ExpressionCmaCh13G005390
SyntenyCmaCh13G005390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATACCGAAGTTTTCCGGCGAGCGTAACCCAAACTCCGGCGACTACGAATACGTCAGCCTCCAACGAACCCTTAGACCTCACCTGTAAGGACAAAAACCATTAAATTGATGAAAATAATTTATGGCGAAATCAAGAATCCTTTTAAGACCTAAATTATATGAAACTCACATATCTATGGCGAAATCCCAAAACAAACGAGGTCGGAGACTTACCTTACGTTCTTGTCCGTTTCTTGCCTGAGACGAACGATCCAAATGCTCAGACCGTTCCTTTTGATCCTCTACGTAGATCTAGTAGGAAACCTGAGATCGAGAGTGCTTCATTGTTCGAGTTTGGGCGTTCTTCCCTCCTTGATCGAGAGTGATCCTCTACGTAAATTGTCGTTCACAAGGGCAATCAAAGACAGCAGTAGAGAGAGGGAAAGAGAGTGTAATACGAGGTTTTAAATAAGTAAAAATAAAAACATATAAGTTCCACATTTCCTCTTACTTCAACCTCCTCATCTGCTCATTGCACTCTATGAATGGCTATTGATAGCACCAAAGCAACCCTTGCTGTGAAGCGAAGGCTTGCATGCGAGATGGTAAAACACTGGCACCAGGTAAGTTTGTTCTTTAATTTATCACACGATTTGATTTCAAATTACCATACATAGACTATTAACCTTCCATCTCTGTTGACTGACTCAATTGCACGTTAAACATTAATGCATACACCCTATCTCATTCATAGAATCCATTTTAGTTTGTGCATTGCGTTTTACTATGTACTTGTACCATATACATTTACGTTCACAAGTGTATATTATCTCCTGTTCTAATGTAACATCAACTAATTTCTCATTGGAACACTGTGCAATTTTAAGTTATTACGTTTATAGGATTAAATAATATTTACATGCGCTGCTATAAAAGAAAATAAAAATGACTTATTCGTACGATATCATATACGAAAATAACTTAATATCAGTTTTGATGGTTCTCGACAACGGATCGAACACAATTTCACAATTAAATGCATTCGAAGGGATGAAAAATCAAGTGTTTCATATCAACAATTCTTATCGTGGGCCTTTGATTGATCCCGATTGATATTTTTGTAGGTTTAAGATTCGATCTCTATTAATTTTGTTTAATGAATTCAAGTTCAAACACTAGGATGAATTTAGTGAGATTAAGGTCAAACCTCTATAATTCATTTTGGGTTTATGATTAAACCACTAACTCAACCAAATGCCATAACATTACGAAGATTCAAGGATCTCTCAACGAAACGCCAGTGGGGCAGAATCAGAATCTGCCTGCCGGTGGTCTGCTTTTTTTATTATATCTGCAAATCAAAGATTGGACGAAACGTCAGTGGGGCACCTCAAGTGTTCGACGAAATGCGCCAAAGAGACGTGGGGGCTTTGGAGCGCAATGTTAATGCAACTGCCCATGTCCTGAAAGGTATGTATAAATGTATATATATATTTTTGGTATTGTGGATTTTGATAGGGACGCATCGATGGTGTTGGTGGGAAAATATTCTGCAAGTTGTGTGGTTTATTGCTGAAAGTTCATTAGCTTTTCAAGAGTATGGCTTTATTCTTCACTCCTTCCTTCCTACATTTGGTGGGGGGTTTGTCTTGTTGCATGTGGAGTACATAGTTTACGTGCGCATTTAGATGTCTCTTCTTGGTGCTAGTGCGATGCGCTCATGTTTGTCAACTATATGTGACTCCTTCAAAACAACACATGGCTTGCCTTACTTTACATGTGATTTTCAGGTTCATTTTAGTTTCTAGATTAAATTACGAATTTAGTCTATAAACTTTTAAGTTCGTGTCAAATAGGTTTTTAAACCTTTAACTTTGTGTCTAATAGGTTATCTTTGATATCTTTCAAAATTTAAGAACTTAATGGACACTAAATTGAGAAGTTTTGTAGAGGTTTGGATTATGTTTTCACGTGAAAGAAGTAAACTGCGGAGAAGTTATACCGAAGATTTGTATGGATTCACTCTTTCATTAGGTTAAAACCATTTCCTACCAATAAGAATGTGGATTACAATGAGTATAATAAAAGAGAACTTTTGCATAATCTCTCAAGAGTATGCCTAACCTTCCTAGTAACCTCTACTTCAATCTTCAAAACCTTCAGTACAATATCATTTAGGAATTAAACTATTTGTTGTGGAAAGATTTGAGGTTGATTTTATTAACCAATTGATATCTCTGATATCTTGTACAACTATCCATGAAAGATAAGAAAAAGACATAATCAGTTAGTTATTGATATGAATAATATATACTAATGATGAGATCTTATAGTTGTTGGTATTGATATTTGTCCATTTTTCTTCACAATGAACTTCTGGGATTCTTCTTGGACTTGAAATCATCATGATACTGCTGATAAACATAGGAAACAAAACCCCAAACCGCCAAAGCCATGGCAACACCTTTCAGTCCACTCATCTTATCATGAAACAAGAACACCGCCGCAACAGGAACTATAGGAAACCCCAGTACACAAACAGCATTGGAAAACAGAGAAGAAACCTCAAATATCAAACCAACACACCCAAGAGTGAAAACCTTCCACAAAATGGCAGTCCAAACCACTGTCATAATGTAAGACACTTTCCCCAACTCAAACTCATTCATCTCCTTCTTCAAACCCCTCCACTCTCCACTCACAAAAAGCCCCACAACAATGGCCAGACAAGCAAAAAACGATCGGAACCAAATCATGTCCACAATAGCCTTGAATGATTCGTTTTTGACGAGCTTGTTGAAGAATAGCTGCGTTAAAGAAAGCACTAGGCCATAGCATGCTGATCCAGCGACCGTGCAGATGAAGCCAATGATGTATTTGGCCTTAGAGGCCTTGTTGTAGGCTGAGCTCTCTGATTCTGTTTGAAAGACAAGGAGGGTTGAGGAGATGGTAAGAACAACAAGGGAGTTGATGATTGAAGGAGTGAACTTTTGGGAATTGAGGAAGAAGGAGAAGATGGCATTGAAGGCTAATTGTGAGGAAGAGAGGAGGGAATAAGTGGAGACAGGGAGGTACATGAGACCAATGGAGAATAAGTAGCAATCTGCAGCTAAAAACAGCCCCAATGAGACATAAACCAGAGCTAGCTTCAACAGAGTTGGTTGTTGTTCTGTGTGGGAAATATTGTTCCTGTTTGTTCTTCGTTTGGTTGCTCTTATGATGTAATAAGGAAGGAAGATGGGGAAGCCTGCTACTTGGACCAAGGTTCCAAGCCATTTGCTTTTGCCTCCTTTGTCAAAGTAGAGTCTTCCAAGGAGGGTAGCCACTGACTGTCCTAGAAGGAGAAAGATTATGTAGAGAAAGATCTTAACCCACTTCTTGTAATTGGCTTTGTGGGTGATTCTTGTTTGGTTGGTGATTGTTTCTGAAGATTCCATGGAGTTTGATCCTTTGGTTATCTGATCTGCTTCTAAGTTATCTGACAATTTAAACAAAATAAGATTAGAAGAGAGAACATAAAATATTTCAATGGCTGCTGACGAGTTGATTCTCCCTTTTTCTCTAAGCTCTTTTCCACTGATACAGAATGGAACAAGAAGCATACAAAATTTCTATCTTCTTTTTAGTCTGCCATTGATTTGCTGGAATTACCTGTAATTTGCAGGCACTTTTCTTGAGCTTCTGCCATGGCTGAAAGTGAAGAGCTTCCTGAGAGAGATGGTGAGGAACCTATGAAGAAGAAAGAACAGACCATTCAAAGAATTGATTCATTAGCTCATCATAAGAAGCCTGCAACTTTGTTTTTTTTTTTTTCTCTCAGTGAAGAACAATCCAAAACAATGTTCTTCCCTTTTATCCCCTTCTTGGACAAAAAAGTTGACC

mRNA sequence

ATGGAGATACCGAAGTTTTCCGGCGAGCGTAACCCAAACTCCGGCGACTACGAATACGTCAGCCTCCAACGAACCCTTAGACCTCACCTCACCAAAGCAACCCTTGCTGTGAAGCGAAGGCTTGCATGCGAGATGGTAAAACACTGGCACCAGATTGGACGAAACGTCAGTGGGGCACCTCAAGTGTTCGACGAAATGCGCCAAAGAGACGTGGGGGCTTTGGAGCGCAATGTTAATGCAACTGCCCATGTCCTGAAAGGAAACAAAACCCCAAACCGCCAAAGCCATGGCAACACCTTTCAGTCCACTCATCTTATCATGAAACAAGAACACCGCCGCAACAGGAACTATAGGAAACCCCAGTACACAAACAGCATTGGAAAACAGAGAAGAAACCTCAAATATCAAACCAACACACCCAAGAGTGAAAACCTTCCACAAAATGGCAGTCCAAACCACTGTCATAATGAAGATGGGGAAGCCTGCTACTTGGACCAAGGTTCCAAGCCATTTGCTTTTGCCTCCTTTGTCAAAGTAGAGTCTTCCAAGGAGGGCACTTTTCTTGAGCTTCTGCCATGGCTGAAAGTGAAGAGCTTCCTGAGAGAGATGGTGAGGAACCTATGAAGAAGAAAGAACAGACCATTCAAAGAATTGATTCATTAGCTCATCATAAGAAGCCTGCAACTTTGTTTTTTTTTTTTTCTCTCAGTGAAGAACAATCCAAAACAATGTTCTTCCCTTTTATCCCCTTCTTGGACAAAAAAGTTGACC

Coding sequence (CDS)

ATGGAGATACCGAAGTTTTCCGGCGAGCGTAACCCAAACTCCGGCGACTACGAATACGTCAGCCTCCAACGAACCCTTAGACCTCACCTCACCAAAGCAACCCTTGCTGTGAAGCGAAGGCTTGCATGCGAGATGGTAAAACACTGGCACCAGATTGGACGAAACGTCAGTGGGGCACCTCAAGTGTTCGACGAAATGCGCCAAAGAGACGTGGGGGCTTTGGAGCGCAATGTTAATGCAACTGCCCATGTCCTGAAAGGAAACAAAACCCCAAACCGCCAAAGCCATGGCAACACCTTTCAGTCCACTCATCTTATCATGAAACAAGAACACCGCCGCAACAGGAACTATAGGAAACCCCAGTACACAAACAGCATTGGAAAACAGAGAAGAAACCTCAAATATCAAACCAACACACCCAAGAGTGAAAACCTTCCACAAAATGGCAGTCCAAACCACTGTCATAATGAAGATGGGGAAGCCTGCTACTTGGACCAAGGTTCCAAGCCATTTGCTTTTGCCTCCTTTGTCAAAGTAGAGTCTTCCAAGGAGGGCACTTTTCTTGAGCTTCTGCCATGGCTGAAAGTGAAGAGCTTCCTGAGAGAGATGGTGAGGAACCTATGA

Protein sequence

MEIPKFSGERNPNSGDYEYVSLQRTLRPHLTKATLAVKRRLACEMVKHWHQIGRNVSGAPQVFDEMRQRDVGALERNVNATAHVLKGNKTPNRQSHGNTFQSTHLIMKQEHRRNRNYRKPQYTNSIGKQRRNLKYQTNTPKSENLPQNGSPNHCHNEDGEACYLDQGSKPFAFASFVKVESSKEGTFLELLPWLKVKSFLREMVRNL
Homology
[Close]
BLAST of CmaCh13G005390 vs. NCBI nr
Match: KAG7019522.1 (hypothetical protein SDJN02_18483 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.1 bits (183), Expect = 7.9e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 51 QIGRNVSGAPQVFDEMRQRDVGALERNVNATAHVLKGNK 90
          +IGRNVSGAPQVFDEMRQRDVGALERNVNATA VLKGN+
Sbjct: 17 KIGRNVSGAPQVFDEMRQRDVGALERNVNATARVLKGNQ 55

[Close]
BLAST of CmaCh13G005390 vs. NCBI nr
Match: KAG6583904.1 (hypothetical protein SDJN03_19836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-08
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 51 QIGRNVSGAPQVFDEMRQRDVGALERNVNATAHVLK 87
          +IGRNVSGAPQVFDEMRQRDVGALERNVNATA VLK
Sbjct: 17 KIGRNVSGAPQVFDEMRQRDVGALERNVNATARVLK 52

[Close]
BLAST of CmaCh13G005390 vs. TAIR 10
Match: AT1G17940.1 (Endosomal targeting BRO1-like domain-containing protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 0 

Query: 20  VSLQRTLRPHLTKATLAVKRRLACEMVKHWHQIGRNVSGAP 61
           V +Q  +    +KATLAVKRRL+CEMVK+W Q   N+   P
Sbjct: 230 VDIQLGMAIDSSKATLAVKRRLSCEMVKYWQQAQDNLMNLP 270

[Close]
BLAST of CmaCh13G005390 vs. TAIR 10
Match: AT1G73390.1 (Endosomal targeting BRO1-like domain-containing protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 20  VSLQRTLRPHLTKATLAVKRRLACEMVKHWHQIGRNVSGAP 61
           V +Q  +     KATLAVKRRL+CEMVK+W Q   N+   P
Sbjct: 229 VDIQLGMAIDSAKATLAVKRRLSCEMVKYWQQAQDNLMNLP 269

[Close]
BLAST of CmaCh13G005390 vs. TAIR 10
Match: AT1G73390.2 (Endosomal targeting BRO1-like domain-containing protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 20  VSLQRTLRPHLTKATLAVKRRLACEMVKHWHQIGRNVSGAP 61
           V +Q  +     KATLAVKRRL+CEMVK+W Q   N+   P
Sbjct: 229 VDIQLGMAIDSAKATLAVKRRLSCEMVKYWQQAQDNLMNLP 269

[Close]
BLAST of CmaCh13G005390 vs. TAIR 10
Match: AT1G73390.3 (Endosomal targeting BRO1-like domain-containing protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 20  VSLQRTLRPHLTKATLAVKRRLACEMVKHWHQIGRNVSGAP 61
           V +Q  +     KATLAVKRRL+CEMVK+W Q   N+   P
Sbjct: 229 VDIQLGMAIDSAKATLAVKRRLSCEMVKYWQQAQDNLMNLP 269

[Close]
BLAST of CmaCh13G005390 vs. TAIR 10
Match: AT1G73390.4 (Endosomal targeting BRO1-like domain-containing protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 20  VSLQRTLRPHLTKATLAVKRRLACEMVKHWHQIGRNVSGAP 61
           V +Q  +     KATLAVKRRL+CEMVK+W Q   N+   P
Sbjct: 229 VDIQLGMAIDSAKATLAVKRRLSCEMVKYWQQAQDNLMNLP 269

The following BLAST results are available for this feature:
BLAST of CmaCh13G005390 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G005390 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G005390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019522.17.9e-1092.31hypothetical protein SDJN02_18483 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6583904.12.0e-0894.44hypothetical protein SDJN03_19836, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh13G005390 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G17940.11.4e-0451.22Endosomal targeting BRO1-like domain-containing protein [more]
AT1G73390.11.8e-0451.22Endosomal targeting BRO1-like domain-containing protein [more]
AT1G73390.21.8e-0451.22Endosomal targeting BRO1-like domain-containing protein [more]
AT1G73390.31.8e-0451.22Endosomal targeting BRO1-like domain-containing protein [more]
AT1G73390.41.8e-0451.22Endosomal targeting BRO1-like domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G005390.1CmaCh13G005390.1mRNA