CmaCh13G004910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G004910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	F-box domain-containing protein
Location	Cma_Chr13: 5263266 .. 5264221 (+)
RNA-Seq Expression	CmaCh13G004910
Synteny	CmaCh13G004910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGCTTATACTCAAGAGATGGCCATCCATTTTCCATTCCCATCCTTTGCATGATCCAGACCGCCCATCGAAGTGTAGAACTCATTGTGATAATTTGGGTTTTTTGTACAGAGAACACGCGTCGATGGTCAATTCATCCATTACTGTTCACAGTGGGAGATTGAGAGCGAGCGAGCAGGAATCGCGGAAGGAACACGGTAGGTTCTCTCAATTTCAGAAGCATTTCATTTGCGGTAACGATTTTAATCCTTAATTTGTTAACTGCGTGGATATTAGAACTTGCATCTTCGTTAGCAATTAGGATGTCGGTCAATTTGTAACTTTGATCTTAAACCATGCAGGTGTTTCTTTCCTGATTTGAGAACCGATTGGACAGCTTTGTTGGATCAGTTGCCTGGTAAAGGCTTCCTTATCTTTCTTTTATCCGAAAGGGGTAATTTAGCTTTTTTAATTTGGATTCTATTGTCATATATTTACATTTTCTTCGACAAGCATCGATGTTTTTAGAAGATAGTAGACACGTTTAATGAATTCAAAGCCCTTTTTGAAATATTTATGATGATTTGTTGCATCAGAAAGAAACGTATGTTAGTTGAAAGTGTTGATCCTTAGATCACTGTCATTTTGCCCTTGCTCACTATTGCTCACTATATTTTGCTCACTATATTTGCTCACTATATTTTCTCACTATATTTTCTCTCAAATCTGATTCCTCCTTCAGAGTTACTCCAAGACTTTTAAAGGGCTGGTCCTCTGAGGGGCTGGCTTTCACTGCTCAATCACGGCTTTAAGGCAAGAGTCCTGTGTCAAAATTAGAAGGAACAAAGAATACATGCAAGCTTTCCCTAAGTTCTTGATTGCATCCCCTTCATTTCACGGTGGGCGTGGTGCCCTGCCTTCAGCTGGTGGGCACCCAGCAGATCTTACCTTCCTTGCTGGTGGTGGTTACTAA

mRNA sequence

ATGAAAAGCTTATACTCAAGAGATGGCCATCCATTTTCCATTCCCATCCTTTGCATGATCCAGACCGCCCATCGAAGTGTAGAACTCATTGTGATAATTTGGAGAACACGCGTCGATGGTCAATTCATCCATTACTGTTCACAGTGGGAGATTGAGAGCGAGCGAGCAGGAATCGCGGAAGGAACACGGCAAGAGTCCTGTGTCAAAATTAGAAGGAACAAAGAATACATGCAAGCTTTCCCTAAGTTCTTGATTGCATCCCCTTCATTTCACGGTGGGCGTGGTGCCCTGCCTTCAGCTGGTGGGCACCCAGCAGATCTTACCTTCCTTGCTGGTGGTGGTTACTAA

Coding sequence (CDS)

ATGAAAAGCTTATACTCAAGAGATGGCCATCCATTTTCCATTCCCATCCTTTGCATGATCCAGACCGCCCATCGAAGTGTAGAACTCATTGTGATAATTTGGAGAACACGCGTCGATGGTCAATTCATCCATTACTGTTCACAGTGGGAGATTGAGAGCGAGCGAGCAGGAATCGCGGAAGGAACACGGCAAGAGTCCTGTGTCAAAATTAGAAGGAACAAAGAATACATGCAAGCTTTCCCTAAGTTCTTGATTGCATCCCCTTCATTTCACGGTGGGCGTGGTGCCCTGCCTTCAGCTGGTGGGCACCCAGCAGATCTTACCTTCCTTGCTGGTGGTGGTTACTAA

Protein sequence

MKSLYSRDGHPFSIPILCMIQTAHRSVELIVIIWRTRVDGQFIHYCSQWEIESERAGIAEGTRQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGGY

Homology

[Close]

BLAST of CmaCh13G004910 vs. ExPASy TrEMBL
Match: A0A5D2KTI7 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G121100v1 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 54/91 (59.34%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 38  VDGQFIHYCSQWEIE---SERAG-----------IAEGTRQESCVKIRRNKEYMQAFPKF 97
           V   F+   S W +E    ER+G           +    R+E C KIRR KE MQAFPKF
Sbjct: 29  VQAVFLFLQSFWPLEKTLEERSGSAGPSWAGFVHLTTALRREPCEKIRRGKECMQAFPKF 88

Query: 98  LIASPSFHGGRGALPSAGGHPADLTFLAGGG 115
           LIASPSFHGGRGALPSAGGHPADLT+LAGGG
Sbjct: 89  LIASPSFHGGRGALPSAGGHPADLTYLAGGG 119

[Close]

BLAST of CmaCh13G004910 vs. ExPASy TrEMBL
Match: A0A5D2QGN8 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A05G119700v1 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.0e-17
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 63  RQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGG 115
           R+E C KIRR KE MQAFPKFLIASPSFHGGRGALPSAGGHPADLT+LAGGG
Sbjct: 44  RREPCEKIRRGKECMQAFPKFLIASPSFHGGRGALPSAGGHPADLTYLAGGG 95

[Close]

BLAST of CmaCh13G004910 vs. ExPASy TrEMBL
Match: A0A5J5RJ23 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D05G113400v1 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.0e-17
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 63  RQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGG 115
           R+E C KIRR KE MQAFPKFLIASPSFHGGRGALPSAGGHPADLT+LAGGG
Sbjct: 62  RREPCEKIRRGKECMQAFPKFLIASPSFHGGRGALPSAGGHPADLTYLAGGG 113

[Close]

BLAST of CmaCh13G004910 vs. ExPASy TrEMBL
Match: A0A7J8S9X5 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_008410 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.0e-17
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 63  RQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGG 115
           R+E C KIRR KE MQAFPKFLIASPSFHGGRGALPSAGGHPADLT+LAGGG
Sbjct: 32  RREPCEKIRRGKECMQAFPKFLIASPSFHGGRGALPSAGGHPADLTYLAGGG 83

[Close]

BLAST of CmaCh13G004910 vs. ExPASy TrEMBL
Match: A0A5D2GE74 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G118300v1 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.0e-17
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 63  RQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGG 115
           R+E C KIRR KE MQAFPKFLIASPSFHGGRGALPSAGGHPADLT+LAGGG
Sbjct: 44  RREPCEKIRRGKECMQAFPKFLIASPSFHGGRGALPSAGGHPADLTYLAGGG 95

[Close]

BLAST of CmaCh13G004910 vs. NCBI nr
Match: KAG7019470.1 (hypothetical protein SDJN02_18431, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 63  RQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGGY 116
           RQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGGY
Sbjct: 36  RQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGGY 88

[Close]

BLAST of CmaCh13G004910 vs. NCBI nr
Match: TYH70491.1 (hypothetical protein ES332_D05G121100v1 [Gossypium tomentosum])

HSP 1 Score: 99.0 bits (245), Expect = 2.9e-17
Identity = 54/91 (59.34%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 38  VDGQFIHYCSQWEIE---SERAG-----------IAEGTRQESCVKIRRNKEYMQAFPKF 97
           V   F+   S W +E    ER+G           +    R+E C KIRR KE MQAFPKF
Sbjct: 29  VQAVFLFLQSFWPLEKTLEERSGSAGPSWAGFVHLTTALRREPCEKIRRGKECMQAFPKF 88

Query: 98  LIASPSFHGGRGALPSAGGHPADLTFLAGGG 115
           LIASPSFHGGRGALPSAGGHPADLT+LAGGG
Sbjct: 89  LIASPSFHGGRGALPSAGGHPADLTYLAGGG 119

[Close]

BLAST of CmaCh13G004910 vs. NCBI nr
Match: MBA0622908.1 (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-16
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 63  RQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGG 115
           R+E C KIRR KE MQAFPKFLIASPSFHGGRGALPSAGGHPADLT+LAGGG
Sbjct: 32  RREPCEKIRRGKECMQAFPKFLIASPSFHGGRGALPSAGGHPADLTYLAGGG 83

[Close]

BLAST of CmaCh13G004910 vs. NCBI nr
Match: KAG4145722.1 (hypothetical protein ERO13_D05G111500v2 [Gossypium hirsutum])

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-16
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 63  RQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGG 115
           R+E C KIRR KE MQAFPKFLIASPSFHGGRGALPSAGGHPADLT+LAGGG
Sbjct: 35  RREPCEKIRRGKECMQAFPKFLIASPSFHGGRGALPSAGGHPADLTYLAGGG 86

[Close]

BLAST of CmaCh13G004910 vs. NCBI nr
Match: TYH16455.1 (hypothetical protein ES288_A05G118300v1 [Gossypium darwinii] >TYI26530.1 hypothetical protein ES332_A05G119700v1 [Gossypium tomentosum])

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-16
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 63  RQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGG 115
           R+E C KIRR KE MQAFPKFLIASPSFHGGRGALPSAGGHPADLT+LAGGG
Sbjct: 44  RREPCEKIRRGKECMQAFPKFLIASPSFHGGRGALPSAGGHPADLTYLAGGG 95

The following BLAST results are available for this feature:

BLAST of CmaCh13G004910 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G004910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2KTI7	1.4e-17	59.34	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G121100v1 P...	[more]
A0A5D2QGN8	9.0e-17	88.46	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A05G119700v1 P...	[more]
A0A5J5RJ23	9.0e-17	88.46	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D05G113400v1 PE...	[more]
A0A7J8S9X5	9.0e-17	88.46	Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_008410 PE=3 SV...	[more]
A0A5D2GE74	9.0e-17	88.46	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G118300v1 PE=...	[more]

BLAST of CmaCh13G004910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019470.1	3.3e-21	100.00	hypothetical protein SDJN02_18431, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TYH70491.1	2.9e-17	59.34	hypothetical protein ES332_D05G121100v1 [Gossypium tomentosum]	[more]
MBA0622908.1	1.9e-16	88.46	hypothetical protein [Gossypium davidsonii]	[more]
KAG4145722.1	1.9e-16	88.46	hypothetical protein ERO13_D05G111500v2 [Gossypium hirsutum]	[more]
TYH16455.1	1.9e-16	88.46	hypothetical protein ES288_A05G118300v1 [Gossypium darwinii] >TYI26530.1 hypothe...	[more]

BLAST of CmaCh13G004910 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G004910.1	CmaCh13G004910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0080048	GDP-D-glucose phosphorylase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016779	nucleotidyltransferase activity