CmaCh13G004610 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G004610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	Cma_Chr13: 5081492 .. 5082037 (-)
RNA-Seq Expression	CmaCh13G004610
Synteny	CmaCh13G004610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCCGCCGTAGCAGCAGCCGCCGCCGCCGCCGCCCTAGCCCGACGGAGTTCCTCCTCCTCCTCCTCCTCGTCCACTACCTCCAACCGATCCTCCTCCGGCTCTTTCTACAGCCAATACTACCCGTCGCCCTCTGTATCGGTCCGACAGCCGCCATTGGCCAGCCGATATGAGTGCAGGAAACGGCTAGACTGGAGTAAATTCCGGCAGTATCTGAGAAGTCGGTGCCCGACATTGAGCCTCGCCACCTGCACCGGAGCGGATATTGTCGAGTTCCTCTGCTATCTAGACGAATTCGGCGACACCAAAGTACACGCCGATACCTGCCCTAATTTCGGCCACCGCTACCCGGTCGATCCCTACTGCGATTGCCCCACCCAGCAACCGTGGAACAGCGTCGCCGGTCTCATCAGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGCAACCCTGTCACCAACCCCTTTAACGCCGTCGATGTCAAAATTTACCTCGACCACATTAAGGACTCCCAAAACAGATCCCGAGGAATTGATCGGTAA

mRNA sequence

ATGTCAGCCGCCGTAGCAGCAGCCGCCGCCGCCGCCGCCCTAGCCCGACGGAGTTCCTCCTCCTCCTCCTCCTCGTCCACTACCTCCAACCGATCCTCCTCCGGCTCTTTCTACAGCCAATACTACCCGTCGCCCTCTGTATCGGTCCGACAGCCGCCATTGGCCAGCCGATATGAGTGCAGGAAACGGCTAGACTGGAGTAAATTCCGGCAGTATCTGAGAAGTCGGTGCCCGACATTGAGCCTCGCCACCTGCACCGGAGCGGATATTGTCGAGTTCCTCTGCTATCTAGACGAATTCGGCGACACCAAAGTACACGCCGATACCTGCCCTAATTTCGGCCACCGCTACCCGGTCGATCCCTACTGCGATTGCCCCACCCAGCAACCGTGGAACAGCGTCGCCGGTCTCATCAGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGCAACCCTGTCACCAACCCCTTTAACGCCGTCGATGTCAAAATTTACCTCGACCACATTAAGGACTCCCAAAACAGATCCCGAGGAATTGATCGGTAA

Coding sequence (CDS)

ATGTCAGCCGCCGTAGCAGCAGCCGCCGCCGCCGCCGCCCTAGCCCGACGGAGTTCCTCCTCCTCCTCCTCCTCGTCCACTACCTCCAACCGATCCTCCTCCGGCTCTTTCTACAGCCAATACTACCCGTCGCCCTCTGTATCGGTCCGACAGCCGCCATTGGCCAGCCGATATGAGTGCAGGAAACGGCTAGACTGGAGTAAATTCCGGCAGTATCTGAGAAGTCGGTGCCCGACATTGAGCCTCGCCACCTGCACCGGAGCGGATATTGTCGAGTTCCTCTGCTATCTAGACGAATTCGGCGACACCAAAGTACACGCCGATACCTGCCCTAATTTCGGCCACCGCTACCCGGTCGATCCCTACTGCGATTGCCCCACCCAGCAACCGTGGAACAGCGTCGCCGGTCTCATCAGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGCAACCCTGTCACCAACCCCTTTAACGCCGTCGATGTCAAAATTTACCTCGACCACATTAAGGACTCCCAAAACAGATCCCGAGGAATTGATCGGTAA

Protein sequence

MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGIDR

Homology

[Close]

BLAST of CmaCh13G004610 vs. ExPASy Swiss-Prot
Match: Q9LMK2 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-37
Identity = 72/137 (52.55%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 43  PSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGD 102
           P PS     P   SRYE +KR DW+ F QYL++  P L+L+ C+GA ++EFL YLD+FG 
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 103 TKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDV 162
           TKVH   CP FGH+ P  P C CP +Q W S+  LI RLR A+EENGG P +NPF A  V
Sbjct: 77  TKVHVAACPYFGHQQPPSP-CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 136

Query: 163 KIYLDHIKDSQNRSRGI 180
           +IYL  +++SQ ++RGI
Sbjct: 137 RIYLREVRESQAKARGI 152

[Close]

BLAST of CmaCh13G004610 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.5e-36
Identity = 69/124 (55.65%), Postives = 87/124 (70.16%), Query Frame = 0


Query: 56  SRYECRKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGH 115
           SRYE +KR DW+ F QYLR+  P LSLA C+GA ++EFL YLD+FG TKVHA  CP FGH
Sbjct: 39  SRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFGH 98

Query: 116 RYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNR 175
             P  P C CP +Q W S+  L+ RLR A+EENGG P  NPF A  V++YL  +++ Q R
Sbjct: 99  PAPPAP-CPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQAR 158

Query: 176 SRGI 180
           +RG+
Sbjct: 159 ARGV 161

[Close]

BLAST of CmaCh13G004610 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-35
Identity = 77/160 (48.12%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 20  SSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPT 79
           S +  S  +   +  G   S    SPS+    P   SRYE +KR DW+ F QYLR+  P 
Sbjct: 4   SPNPDSPPSGGGNGGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPP 63

Query: 80  LSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLIS 139
           LSLA C+GA ++EFL YLD+FG TKVH   CP FGH  P  P C CP +Q W S+  L+ 
Sbjct: 64  LSLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHPSPPAP-CPCPLRQAWGSLDALVG 123

Query: 140 RLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGI 180
           RLR AFEENGG P +NPF A  V++YL  +++ Q R+RG+
Sbjct: 124 RLRAAFEENGGRPESNPFAARAVRLYLREVREHQARARGV 162

[Close]

BLAST of CmaCh13G004610 vs. ExPASy Swiss-Prot
Match: Q7XRS1 (Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2)

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-35
Identity = 77/160 (48.12%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 20  SSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPT 79
           S +  S  +   +  G   S    SPS+    P   SRYE +KR DW+ F QYLR+  P 
Sbjct: 4   SPNPDSPPSGGGNGGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPP 63

Query: 80  LSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLIS 139
           LSLA C+GA ++EFL YLD+FG TKVH   CP FGH  P  P C CP +Q W S+  L+ 
Sbjct: 64  LSLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHPSPPAP-CPCPLRQAWGSLDALVG 123

Query: 140 RLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGI 180
           RLR AFEENGG P +NPF A  V++YL  +++ Q R+RG+
Sbjct: 124 RLRAAFEENGGRPESNPFAARAVRLYLREVREHQARARGV 162

[Close]

BLAST of CmaCh13G004610 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.2e-35
Identity = 83/170 (48.82%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 10  AAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKF 69
           AAAA+   + SSSS + T++     G       PSPS S    P  SRYE +KR DW+ F
Sbjct: 43  AAAAMFSGAGSSSSGAGTSAGGGGGG-------PSPSSS---SPSLSRYESQKRRDWNTF 102

Query: 70  RQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQ 129
            QYLR+  P LSL+ C+GA ++EFL Y+D+FG TKVH   CP +GH  P  P C CP +Q
Sbjct: 103 GQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAP-CPCPLRQ 162

Query: 130 PWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGI 180
            W S+  LI RLR A+EENGG P  NPF A  V++YL  ++++Q R+RGI
Sbjct: 163 AWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGI 201

[Close]

BLAST of CmaCh13G004610 vs. ExPASy TrEMBL
Match: A0A6J1KGB9 (protein G1-like6 OS=Cucurbita maxima OX=3661 GN=LOC111495526 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.4e-95
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
           RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180
           PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID
Sbjct: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180

Query: 181 R 182
           R
Sbjct: 181 R 181

[Close]

BLAST of CmaCh13G004610 vs. ExPASy TrEMBL
Match: A0A6J1EH11 (protein G1-like6 OS=Cucurbita moschata OX=3662 GN=LOC111434020 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.6e-92
Identity = 178/181 (98.34%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAVAAAAAAAALARR SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC
Sbjct: 1   MSAAVAAAAAAAALARR-SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
           RKRLDWSKFRQYLRSRCPTLSL+TCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180
           PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLD IKDSQNRSRGID
Sbjct: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID 180

Query: 181 R 182
           R
Sbjct: 181 R 180

[Close]

BLAST of CmaCh13G004610 vs. ExPASy TrEMBL
Match: A0A5D3E452 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold74574G00010 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.5e-69
Identity = 137/181 (75.69%), Postives = 150/181 (82.87%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAV AAAAAAAL RR+SS       TS  SSS SFYS YYPS SVSVR PPL SRYEC
Sbjct: 1   MSAAV-AAAAAAALGRRTSS-------TSTPSSSDSFYSHYYPSASVSVRPPPLLSRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
            KR DW++FRQYLRSRCPTLSLA C+GA++VEFLCYLDE G +K+H  TCPNFG RYPVD
Sbjct: 61  LKRRDWNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180
           PYCDCPTQQPW ++  LI RLRVAFEENGGNPVTNPFN VDVK+YL+ +KDSQ RSRGID
Sbjct: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGID 173

Query: 181 R 182
           R
Sbjct: 181 R 173

[Close]

BLAST of CmaCh13G004610 vs. ExPASy TrEMBL
Match: A0A1S3C9J9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103498324 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.5e-69
Identity = 137/181 (75.69%), Postives = 150/181 (82.87%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAV AAAAAAAL RR+SS       TS  SSS SFYS YYPS SVSVR PPL SRYEC
Sbjct: 1   MSAAV-AAAAAAALGRRTSS-------TSTPSSSDSFYSHYYPSASVSVRPPPLLSRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
            KR DW++FRQYLRSRCPTLSLA C+GA++VEFLCYLDE G +K+H  TCPNFG RYPVD
Sbjct: 61  LKRRDWNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180
           PYCDCPTQQPW ++  LI RLRVAFEENGGNPVTNPFN VDVK+YL+ +KDSQ RSRGID
Sbjct: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGID 173

Query: 181 R 182
           R
Sbjct: 181 R 173

[Close]

BLAST of CmaCh13G004610 vs. ExPASy TrEMBL
Match: A0A0A0LY69 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.4e-66
Identity = 135/181 (74.59%), Postives = 152/181 (83.98%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAV AAAAAAAL+RR +SSSSSSSTT  RSSS SFYS YYPS SVSVR  PL SRY+C
Sbjct: 1   MSAAV-AAAAAAALSRR-TSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
            KR DW++FRQYLRSR PTLSLA C+G+++VEFL YLD  G +K+H  TCP+FGHRYPVD
Sbjct: 61  LKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180
           PYCDCPTQQPW ++  LI RLRVAFEENGGNPVTNPFN V VK+YL+ +KDSQ  SRGID
Sbjct: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGID 179

Query: 181 R 182
           R
Sbjct: 181 R 179

[Close]

BLAST of CmaCh13G004610 vs. NCBI nr
Match: XP_023001367.1 (protein G1-like6 [Cucurbita maxima])

HSP 1 Score: 357.1 bits (915), Expect = 9.2e-95
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
           RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180
           PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID
Sbjct: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180

Query: 181 R 182
           R
Sbjct: 181 R 181

[Close]

BLAST of CmaCh13G004610 vs. NCBI nr
Match: XP_023519738.1 (protein G1-like6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.9 bits (899), Expect = 6.6e-93
Identity = 178/181 (98.34%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
           RKRLDWSKFRQYLRSRCPTLSL+TCTGADIVEFLCYLDEFGDTKVH DTCPNFGHRYPVD
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHTDTCPNFGHRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180
           PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLD IKDSQNRSRGID
Sbjct: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID 180

Query: 181 R 182
           R
Sbjct: 181 R 181

[Close]

BLAST of CmaCh13G004610 vs. NCBI nr
Match: XP_022927089.1 (protein G1-like6 [Cucurbita moschata])

HSP 1 Score: 347.1 bits (889), Expect = 9.5e-92
Identity = 178/181 (98.34%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAVAAAAAAAALARR SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC
Sbjct: 1   MSAAVAAAAAAAALARR-SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
           RKRLDWSKFRQYLRSRCPTLSL+TCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180
           PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLD IKDSQNRSRGID
Sbjct: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID 180

Query: 181 R 182
           R
Sbjct: 181 R 180

[Close]

BLAST of CmaCh13G004610 vs. NCBI nr
Match: KAG7019447.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 341.7 bits (875), Expect = 4.0e-90
Identity = 177/181 (97.79%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAV AAAAAAALARR SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC
Sbjct: 1   MSAAV-AAAAAAALARR-SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
           RKRLDWSKFRQYLRSRCPTLSL+TCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180
           PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLD IKDSQNRSRGID
Sbjct: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID 179

Query: 181 R 182
           R
Sbjct: 181 R 179

[Close]

BLAST of CmaCh13G004610 vs. NCBI nr
Match: KAG6583821.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 341.7 bits (875), Expect = 4.0e-90
Identity = 177/181 (97.79%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60
           MSAAV AAAAAAALARR SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC
Sbjct: 1   MSAAV-AAAAAAALARR-SSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120
           RKRLDWSKFRQYLRSRCPTLSL+TCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120

Query: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180
           PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLD IKDSQNRSRGID
Sbjct: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID 179

Query: 181 R 182
           R
Sbjct: 181 R 179

[Close]

BLAST of CmaCh13G004610 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 157.9 bits (398), Expect = 7.6e-39
Identity = 72/137 (52.55%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 43  PSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGD 102
           P PS     P   SRYE +KR DW+ F QYL++  P L+L+ C+GA ++EFL YLD+FG 
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 103 TKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDV 162
           TKVH   CP FGH+ P  P C CP +Q W S+  LI RLR A+EENGG P +NPF A  V
Sbjct: 77  TKVHVAACPYFGHQQPPSP-CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 136

Query: 163 KIYLDHIKDSQNRSRGI 180
           +IYL  +++SQ ++RGI
Sbjct: 137 RIYLREVRESQAKARGI 152

[Close]

BLAST of CmaCh13G004610 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 149.1 bits (375), Expect = 3.5e-36
Identity = 86/168 (51.19%), Postives = 107/168 (63.69%), Query Frame = 0


Query: 12  AALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKFRQ 71
           AA A  +++SSSSSS     SS GS  +Q               SRYE +KR DW+ F Q
Sbjct: 22  AAAATTTTTSSSSSS-----SSGGSGTNQ--------------LSRYENQKRRDWNTFGQ 81

Query: 72  YLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQPW 131
           YLR+  P LSL+ C+GA ++EFL YLD+FG TKVH   CP FGH  P  P C CP +Q W
Sbjct: 82  YLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAP-CACPLRQAW 141

Query: 132 NSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGI 180
            S+  LI RLR AFEENGG+P TNPF A  V++YL  ++DSQ ++RGI
Sbjct: 142 GSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGI 169

[Close]

BLAST of CmaCh13G004610 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-34
Identity = 76/159 (47.80%), Postives = 101/159 (63.52%), Query Frame = 0


Query: 21  SSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTL 80
           S++SSS T       +       SPS +      +SRYE +KR DW+ F QYLR+  P L
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSAN------SSRYENQKRRDWNTFGQYLRNHRPPL 83

Query: 81  SLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISR 140
           SL+ C+GA ++EFL YLD+FG TKVH + C  +GH  P  P C CP +Q W S+  LI R
Sbjct: 84  SLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAP-CPCPLRQAWGSLDALIGR 143

Query: 141 LRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGI 180
           LR AFEENGG P TNPF A  V++YL  ++D Q+++RG+
Sbjct: 144 LRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGV 175

[Close]

BLAST of CmaCh13G004610 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-34
Identity = 76/155 (49.03%), Postives = 102/155 (65.81%), Query Frame = 0


Query: 25  SSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLAT 84
           S   +NR+ + S  +Q   +PS S   PP +SRYE +KR DW+ F QYLR+  P LSLA+
Sbjct: 5   SQNHNNRNPNTSLSTQ---TPS-SFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLAS 64

Query: 85  CTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVA 144
           C+GA +++FL YLD+FG TKVH   C  FG   P  P C CP +Q W S+  LI RLR A
Sbjct: 65  CSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAP-CPCPLRQAWGSLDALIGRLRAA 124

Query: 145 FEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGI 180
           +EENGG P T+PF +  V+I+L  ++D Q +SRG+
Sbjct: 125 YEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGV 154

[Close]

BLAST of CmaCh13G004610 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-34
Identity = 66/128 (51.56%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 52  PPLASRYECRKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCP 111
           PP +SRYE +KR DW+ F QYLR+  P LSL +C+GA ++EFL YLD+FG TKVH   C 
Sbjct: 20  PPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCA 79

Query: 112 NFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKD 171
            FG   P  P C CP +Q W S+  LI RLR A+EENGG P  NPF +  V+++L  ++D
Sbjct: 80  FFGLPNPPAP-CPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRD 139

Query: 172 SQNRSRGI 180
            Q ++RG+
Sbjct: 140 FQAKARGV 146

The following BLAST results are available for this feature:

BLAST of CmaCh13G004610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK2	1.1e-37	52.55	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q7XDD0	4.5e-36	55.65	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
A2XVI8	1.7e-35	48.13	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]
Q7XRS1	1.7e-35	48.13	Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2	[more]
A2XAV5	2.2e-35	48.82	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]

BLAST of CmaCh13G004610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGB9	4.4e-95	100.00	protein G1-like6 OS=Cucurbita maxima OX=3661 GN=LOC111495526 PE=3 SV=1	[more]
A0A6J1EH11	4.6e-92	98.34	protein G1-like6 OS=Cucurbita moschata OX=3662 GN=LOC111434020 PE=3 SV=1	[more]
A0A5D3E452	5.5e-69	75.69	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C9J9	5.5e-69	75.69	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LY69	7.4e-66	74.59	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=3 S...	[more]

BLAST of CmaCh13G004610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001367.1	9.2e-95	100.00	protein G1-like6 [Cucurbita maxima]	[more]
XP_023519738.1	6.6e-93	98.34	protein G1-like6 [Cucurbita pepo subsp. pepo]	[more]
XP_022927089.1	9.5e-92	98.34	protein G1-like6 [Cucurbita moschata]	[more]
KAG7019447.1	4.0e-90	97.79	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583821.1	4.0e-90	97.79	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]

BLAST of CmaCh13G004610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07090.1	7.6e-39	52.55	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.5e-36	51.19	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.1e-34	47.80	Protein of unknown function (DUF640)	[more]
AT3G04510.1	1.5e-34	49.03	Protein of unknown function (DUF640)	[more]
AT5G28490.1	1.9e-34	51.56	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 48..171 e-value: 6.8E-41 score: 139.4
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 57..181 score: 37.753242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..36
None	No IPR available	PANTHER	PTHR31165:SF41	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4	coord: 18..180
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 18..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G004610.1	CmaCh13G004610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus