CmaCh13G003840 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G003840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NADH-u_ox-rdase domain-containing protein
Location	Cma_Chr13: 4440372 .. 4442061 (-)
RNA-Seq Expression	CmaCh13G003840
Synteny	CmaCh13G003840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCAAACCTTAAACCACACGAATCTCCTAGCTGCCGTTGGAGACATGAGGGCCCAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACGCCACCACCCAACTAACCCTAAGAGACATCACCTTCTTCATCCCCCTTGACCCTCAGCTCTCGAACATCTCAATACCGACCGACCATCTTGAGTCGTTCGTCCTCAGTCATTCGATTGTCATGCCGCTGCAATTCAGTGACTTGATTCGATTTCCCACTGGCTCCATCGTTCCTTCGGGTTATCGTAATAGGATGATCAGAATCCATAACCATGGAAGAGGCCATTTTCTTGTCAATAATGCTGCCGTCACTATTCCTAATGTTTGTTCTAGTTCCGGGGGTATTAAGTGTCATGGGATTGATAAGGTCATTGATTACGGTAATGCTTATGATAATCATAATGTTTAATTTCTAGGGTTATATCTTTGGAATATAGTTTCTTGGAATGAACGTTAGTAGCTAGCTAGTGGTGTCAAATATGGAAACCATCATATAGTTCATTAATAAAAATCAAGGGACCATAATGGTTGATTGCTCAAAACACCCGGCGTGTAATCTACTCACTAAAAATCATTTTCAGCAATCACTTCTCAGTAACCGTTAGTAGTTCGCTATCTGATACACACAACGTGTAACCCTTGCCACAAAAATAATTTTCGACAATCATCTCAAGTGACCATAGGTGGTTAGTTACCCGATACATAATGGGTAACCCTTACCACATTCACTACATTAAAAAATCATAATACGCACATGTGCGATCCCAACACATATATTTTTCATGACTAGTAAGCATAACAAAAAACAACAAACATTCATATAATATCATACACATCCAACCGTCGTTTAGAAAAATAAAACGATTTAGTTTCAATAGGAAGATTCCTTGCCTCGAGTGTTTCCCTTAATCATTACAAATGATATCAGAGTAGTGTCTCTCCCTGTAAGATGTGGTTCGGAGACGAATCAAAGTGGAAGCTGATGGTCACGTGGCACTTGAGTAAACAAGGGATACATGAATGAGCAGGTTCACCCATTTTGTACGATGGGCTATGGCTGATCCAACTATTTTGGGCCCAGCCCATGAAATGCCCGTTTTTCAGTCACCAATCACTTGCGTTCATTTCGTCTCAGACGGCAGCGAGTCGGTAGGCGAATTATTACAGTCACACAACGAGAGAGAGAGCCGGCGGAGGTCAGTTTCAGCACCGGAGAAGACGTGATGAACACTGACATTACAGCTTCGACTAAGCCGGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCAGTCACCGTCGGTTATCTTTCCGGTACCAATCTCTCTCTCTCTCTCTCTTACTTTTCTTCTTTTCTTCTATTCCGTTTCGTTGCTCATCTGGAAATCTGTTCTCCTGTCTTTGCGTTTTAGGGATTAAACCCGGGATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAAGATTGCGCGTTTTCGTGTTCTTTTTTTT

mRNA sequence

ATGTCCCAAACCTTAAACCACACGAATCTCCTAGCTGCCGTTGGAGACATGAGGGCCCAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACGCCACCACCCAACTAACCCTAAGAGACATCACCTTCTTCATCCCCCTTGACCCTCAGCTCTCGAACATCTCAATACCGACCGACCATCTTGAGTCGTTCGTCCTCAGTCATTCGATTGTCATGCCGCTGCAATTCAGTGACTTGATTCGATTTCCCACTGGCTCCATCGTTCCTTCGGGTTATCGTAATAGGATGATCAGAATCCATAACCATGGAAGAGGCCATTTTCTTGTCAATAATGCTGCCGTCACTATTCCTAATGTTTGTTCTAGTTCCGGGGGTATTAAGTGTCATGGGATTGATAAGCGAGTCGGTAGGCGAATTATTACAGTCACACAACGAGAGAGAGAGCCGGCGGAGGTCAGTTTCAGCACCGGAGAAGACGTGATGAACACTGACATTACAGCTTCGACTAAGCCGGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCAGTCACCGTCGGTTATCTTTCCGGGATTAAACCCGGGATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAAGATTGCGCGTTTTCGTGTTCTTTTTTTT

Coding sequence (CDS)

ATGTCCCAAACCTTAAACCACACGAATCTCCTAGCTGCCGTTGGAGACATGAGGGCCCAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACGCCACCACCCAACTAACCCTAAGAGACATCACCTTCTTCATCCCCCTTGACCCTCAGCTCTCGAACATCTCAATACCGACCGACCATCTTGAGTCGTTCGTCCTCAGTCATTCGATTGTCATGCCGCTGCAATTCAGTGACTTGATTCGATTTCCCACTGGCTCCATCGTTCCTTCGGGTTATCGTAATAGGATGATCAGAATCCATAACCATGGAAGAGGCCATTTTCTTGTCAATAATGCTGCCGTCACTATTCCTAATGTTTGTTCTAGTTCCGGGGGTATTAAGTGTCATGGGATTGATAAGCGAGTCGGTAGGCGAATTATTACAGTCACACAACGAGAGAGAGAGCCGGCGGAGGTCAGTTTCAGCACCGGAGAAGACGTGATGAACACTGACATTACAGCTTCGACTAAGCCGGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCAGTCACCGTCGGTTATCTTTCCGGGATTAAACCCGGGATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAA

Protein sequence

MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDHLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPNVCSSSGGIKCHGIDKRVGRRIITVTQREREPAEVSFSTGEDVMNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK

Homology

[Close]

BLAST of CmaCh13G003840 vs. ExPASy Swiss-Prot
Match: P0DH64 (FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_448915 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-07
Identity = 36/124 (29.03%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 14  VGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNI--SIPTDHLESFVLSHS 73
           V +M  Q F   A + Q L   T + +R  T  IP +  ++ +  ++  + + + +  H 
Sbjct: 76  VSNMIGQGFTVAAAVAQSLQ--TLIPIRS-TLLIPSNNAIAGVDANLSQEDIINTLQYHV 135

Query: 74  IVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPNVCSSSGGIKCH 133
           +  P  F  L R   G+ +P+  +  MI + ++  G+F +N   +T P+VCSS+  I CH
Sbjct: 136 LTFPTSFEALSRNDVGAELPTMLQGEMITVTSNSPGNFTLNEVNITHPDVCSSTRFIACH 195

Query: 134 GIDK 136
           GID+
Sbjct: 196 GIDR 196

[Close]

BLAST of CmaCh13G003840 vs. ExPASy TrEMBL
Match: A0A6J1KFG1 (FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucurbita maxima OX=3661 GN=LOC111495332 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.6e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT 60
           MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT
Sbjct: 26  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT 85

Query: 61  DHLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPN 120
           DHLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPN
Sbjct: 86  DHLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPN 145

Query: 121 VCSSSGGIKCHGIDK 136
           VCSSSGGIKCHGIDK
Sbjct: 146 VCSSSGGIKCHGIDK 160

[Close]

BLAST of CmaCh13G003840 vs. ExPASy TrEMBL
Match: A0A6J1EI57 (FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucurbita moschata OX=3662 GN=LOC111434302 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.5e-67
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT 60
           MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT
Sbjct: 1   MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT 60

Query: 61  DHLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPN 120
           D LESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVT+PN
Sbjct: 61  DRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTVPN 120

Query: 121 VCSSSGGIKCHGIDK 136
           VCSSS GIKCHGIDK
Sbjct: 121 VCSSSEGIKCHGIDK 135

[Close]

BLAST of CmaCh13G003840 vs. ExPASy TrEMBL
Match: A0A1S3CJM9 (FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucumis melo OX=3656 GN=LOC103501717 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 9.4e-54
Identity = 108/134 (80.60%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 2   SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTD 61
           SQT N T+L AA+ DM+AQSFYGFAILLQMLN TTQLTL++ITFFIP D QLSNISI  +
Sbjct: 23  SQTSNKTDLQAAIEDMKAQSFYGFAILLQMLNITTQLTLKEITFFIPQDSQLSNISIAVN 82

Query: 62  HLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPNV 121
           HLE+FVLSH IVMPLQFSDLIRFPTGSIVPSGY NRMIRIHN+GRGHF+VNNA V +PNV
Sbjct: 83  HLEAFVLSHLIVMPLQFSDLIRFPTGSIVPSGYHNRMIRIHNNGRGHFVVNNAVVNVPNV 142

Query: 122 CSSSGGIKCHGIDK 136
           CSSS GIKCHG++K
Sbjct: 143 CSSSLGIKCHGVNK 156

[Close]

BLAST of CmaCh13G003840 vs. ExPASy TrEMBL
Match: A0A0A0LT27 (NADH-u_ox-rdase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 112/134 (83.58%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 131 HGIDKRVGRRIITVTQRER-EPAEV-SFSTGEDVMNTDITASTKPEYPVIDRNPPFTKVV 190
           H +D+   +R+   + RER   AE+ SFS GED MNTDITASTKPEYPV+DRNPPFTKVV
Sbjct: 12  HSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPVVDRNPPFTKVV 71

Query: 191 GNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLM 250
           GNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLM
Sbjct: 72  GNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLM 131

Query: 251 GFFPNEGEVARYKK 263
           GFFPN+GEVARYKK
Sbjct: 132 GFFPNDGEVARYKK 145

[Close]

BLAST of CmaCh13G003840 vs. ExPASy TrEMBL
Match: A0A6J1HSH8 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita maxima OX=3661 GN=LOC111466374 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.1e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 163 MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 222
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 223 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 263
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]

BLAST of CmaCh13G003840 vs. NCBI nr
Match: KAG6583741.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 481.5 bits (1238), Expect = 4.7e-132
Identity = 243/260 (93.46%), Postives = 246/260 (94.62%), Query Frame = 0


Query: 1   MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT 60
           MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT
Sbjct: 1   MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT 60

Query: 61  DHLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPN 120
           D LESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVT+PN
Sbjct: 61  DRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTVPN 120

Query: 121 VCSSSGGIKCHGIDKRVGRR---IITVTQREREPAEVSFSTGEDVMNTDITASTKPEYPV 180
           VCSSS GIKCHGIDK    R      V QR REPAEVSFSTGEDVMNTDITASTKPEYPV
Sbjct: 121 VCSSSEGIKCHGIDKTAASRQANYYRVAQRGREPAEVSFSTGEDVMNTDITASTKPEYPV 180

Query: 181 IDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM 240
           IDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM
Sbjct: 181 IDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM 240

Query: 241 YAYQNSAGRLMGFFPNEGEV 258
           YAYQNSAGR+MGFFPNEGE+
Sbjct: 241 YAYQNSAGRIMGFFPNEGEI 260

[Close]

BLAST of CmaCh13G003840 vs. NCBI nr
Match: XP_023001077.1 (FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita maxima])

HSP 1 Score: 272.7 bits (696), Expect = 3.3e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT 60
           MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT
Sbjct: 26  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT 85

Query: 61  DHLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPN 120
           DHLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPN
Sbjct: 86  DHLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPN 145

Query: 121 VCSSSGGIKCHGIDK 136
           VCSSSGGIKCHGIDK
Sbjct: 146 VCSSSGGIKCHGIDK 160

[Close]

BLAST of CmaCh13G003840 vs. NCBI nr
Match: XP_022927494.1 (FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita moschata] >KAG7019381.1 FAS1 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 266.2 bits (679), Expect = 3.1e-67
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT 60
           MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT
Sbjct: 1   MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT 60

Query: 61  DHLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPN 120
           D LESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVT+PN
Sbjct: 61  DRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTVPN 120

Query: 121 VCSSSGGIKCHGIDK 136
           VCSSS GIKCHGIDK
Sbjct: 121 VCSSSEGIKCHGIDK 135

[Close]

BLAST of CmaCh13G003840 vs. NCBI nr
Match: XP_023520235.1 (FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.3 bits (669), Expect = 4.4e-66
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPT 60
           MSQTLNHTNL+AAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISI T
Sbjct: 1   MSQTLNHTNLIAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIST 60

Query: 61  DHLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPN 120
           D LESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVT+PN
Sbjct: 61  DRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTVPN 120

Query: 121 VCSSSGGIKCHGIDK 136
           VCSSS GIKCHGIDK
Sbjct: 121 VCSSSEGIKCHGIDK 135

[Close]

BLAST of CmaCh13G003840 vs. NCBI nr
Match: XP_038893487.1 (FAS1 domain-containing protein SELMODRAFT_448915-like [Benincasa hispida])

HSP 1 Score: 222.2 bits (565), Expect = 5.1e-54
Identity = 107/134 (79.85%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 2   SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTD 61
           SQ  NHT+L AA+ DM+A+SFYGFAILLQMLN TTQLTL++ITFFIP DPQLSNISI  D
Sbjct: 29  SQPANHTDLQAAIEDMKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVD 88

Query: 62  HLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPNV 121
            LE+FVLSH IVMPL+FSDLIRFPTGSIVPSGY NRMIRIHNHGRGHF+VNNA V +PNV
Sbjct: 89  RLEAFVLSHLIVMPLEFSDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNV 148

Query: 122 CSSSGGIKCHGIDK 136
           CSSS  IKCHG++K
Sbjct: 149 CSSSESIKCHGVNK 162

[Close]

BLAST of CmaCh13G003840 vs. TAIR 10
Match: AT4G16450.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 181.4 bits (459), Expect = 9.3e-46
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 163 MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 222
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 223 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 263
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

[Close]

BLAST of CmaCh13G003840 vs. TAIR 10
Match: AT4G16450.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. )

HSP 1 Score: 181.4 bits (459), Expect = 9.3e-46
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 163 MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 222
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 223 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 263
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

[Close]

BLAST of CmaCh13G003840 vs. TAIR 10
Match: AT5G26730.1 (Fasciclin-like arabinogalactan family protein )

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-23
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 6   NHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDHLES 65
           N T+L++A+ DMR QS+ GF ILL+ LN T      DITF +P D  +S+  I  + LE+
Sbjct: 114 NQTDLISAMTDMRRQSYNGFVILLRFLNDTNYFRNTDITFLMPSDNDISHADITPESLET 173

Query: 66  FVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPNVCSSS 125
           F+L H+I   L  + ++ FP  ++VP  + +RM  I   G     VNNA +  PNVC +S
Sbjct: 174 FILKHTIPAWLMINHMLHFPNRTLVPCSFSDRMFTITKSGGSGIYVNNARIVTPNVCQNS 233

Query: 126 GGIKCHGI 134
             I CHGI
Sbjct: 234 -RISCHGI 240

The following BLAST results are available for this feature:

BLAST of CmaCh13G003840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DH64	6.3e-07	29.03	FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella moellendorffii O...	[more]

BLAST of CmaCh13G003840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFG1	1.6e-69	100.00	FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1EI57	1.5e-67	97.78	FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucurbita moschata OX=3...	[more]
A0A1S3CJM9	9.4e-54	80.60	FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0LT27	1.2e-53	83.58	NADH-u_ox-rdase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G18...	[more]
A0A6J1HSH8	4.1e-49	100.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita maxima OX=3661...	[more]

BLAST of CmaCh13G003840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583741.1	4.7e-132	93.46	Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp...	[more]
XP_023001077.1	3.3e-69	100.00	FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita maxima]	[more]
XP_022927494.1	3.1e-67	97.78	FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita moschata] >KAG7...	[more]
XP_023520235.1	4.4e-66	96.30	FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita pepo subsp. pep...	[more]
XP_038893487.1	5.1e-54	79.85	FAS1 domain-containing protein SELMODRAFT_448915-like [Benincasa hispida]	[more]

BLAST of CmaCh13G003840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16450.1	9.3e-46	87.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]
AT4G16450.2	9.3e-46	87.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]
AT5G26730.1	8.5e-23	42.19	Fasciclin-like arabinogalactan family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019721	NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal	PFAM	PF10785	NADH-u_ox-rdase	coord: 173..251 e-value: 1.0E-19 score: 71.0
None	No IPR available	PANTHER	PTHR36069:SF3	ARABINOGALACTAN FAMILY PROTEIN, PUTATIVE-RELATED	coord: 3..135
None	No IPR available	PANTHER	PTHR36069	EXPRESSED PROTEIN-RELATED	coord: 3..135
IPR036378	FAS1 domain superfamily	SUPERFAMILY	82153	FAS1 domain	coord: 22..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G003840.1	CmaCh13G003840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I