CmaCh13G003550 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G003550
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr13: 4075810 .. 4077906 (-)
RNA-Seq ExpressionCmaCh13G003550
SyntenyCmaCh13G003550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGGCGGGAGGGAGAAGCAAGAAGAGAGGGTGGGCGGCCCGATCCGTTCACATTTTTTGAAGTAAGTCTCATGCTTGAGTTTAAATCCGAAATCACAAGCATTATGAGGTCTGCCTATATGAATTTTTTGTTGAAGCATGGAGTTCAACATATAGTATCCCGATGGCTTTTTGAACAGTTTACCATTTTGGTTGATTATTTCGGTATTTTGTAGAATCTGGGCGTACACTTTGAAGTTCAGGAATAGAAAGAGAGGAAATGTATCATTTGCCATTTGAAATTAAATATATATCTAATCCCAGATGAAGAGGTTCAGTCCAAGAAAATTTGTGAAGCAAACTTGCAATGGGAGGTAAACAAAATTTACATTTCTTCTGATATGGAATCACACAAAAATCAGCAAAAGATTTTCTCAAAAGTATTTAACATTAATGAATGAGAAGGGGGCCTACATCTCTTAGTAGGGGTGACCTAATATGCAATGAGTTCTATGAATTGGTTGCTTGACAAAGCCTTGATATTATCATTTGTATAGCTAATATTGTAGTGTTTGTTTTTGCCTCATAAGAACCACACGTATCTCATTGGTTAGTGCAAAGTCGGTTTTGTCCTAGTACTTGAGATTATGAGCTACTGATTTTTTTATTTATTATTTCACCTGTTATTAATTTCTCACATTATTAACATTTGATGGATTTGGAACTTTGCCAAACAACCATATAGAAAGTGGTTGTGCAGTAATATTTCTTTCAATTCCTAGCAATAGTTCGAATTCTTGGTGCTTTAGTAAATCGAATTAGGGATGTTATACTAGTTAAATATTCAAGGCGATAAAAAGTTTAGATTCATCTAAATGTTATTTTCTTGGAATGCACTTCTATTTTTGGTGTTAGGGATGATGGGTTCAAGAGTCTTGTTATTTCAATTCTGCTGCATTATTTTAATCCTAAGCTAACCACTCATGTTTTTTAGTTGAGTTTTTTTTTTCTTTCCATTTTACCTTGGGGAGGGACCTGTTAGAAGGGAAAAAGAAGAAGAAGAAAAAAAAACTACTCGAGGGTTTATCTTGAAAGGAAGAAATCGTCATAAGAAGGTTCAGGAATATGTAAGTTTGTAAGGAGATTATGATATGAAGTATTGGAGTTTATTGACATATTTGAGTTTGGAGTTTGTTGTCAATTGTGAGTGCCGATAGTGTTTTTCACCATCCGCCATCTTGTAGCATCTTGTAGTTCATTGGTACTTTTGAGTTAATAAACGTCATTTGTGTATATATGTTATAGGTGAATTCATGTATTTAAAGAAATCTCTTGTTGGATGGGACTTGTTCTATGTGGTTAAGGTGATATCATGTATTAGTGATACGTGTCTTTTCAGTTTTGCAGGTTTGGCGTAGGAAGCTTAATATCAGACACAAATGTTTTGTTGCACAAAGGTTGCATTGTATACATGTCTCCCCAAAACAAGGTCTATTTCTCTCACTCCCTCCTCCTTACGGCTCTACCATAGAGTTATTGTGATTGCTATACTTTTATGTTTCTTTACTTTTTAGGAAATATATCACATGCTATTTGGCTAGGCTATTCTGTAGTTATGGAAGCTATAATCTTCGATCTTTTTGGCTTTTATATTTCTGTTATATGATTACCAGTTGTCAAATTGTAGTTTTTTACATGAATCTCTAGTTTTGAAAGTTCGCTAAGTACAAGTTGTGTATAAGCATGATTATTGGTGGAATACATTTATAGTTTCATATTGGTTGATGGAGTTTATCATTTTGAAAATACTTCTAATATGGTGAATACATATAGGTTGTAATTTTTGAATTTCTCACATGTTTGATAGAGCTTATGGTAATTTCCAGACTTGTTCATTAAGTTGATGAATTTCTCTGAAACTCTGAACTAGTGTAATGGAAGTTATTCATGGAGCATTTATAATTTTGAAGATGCAAGTATACAGTTCTATTAGTTTGGCTTTCTCACCTAGATTATTTCCAGGTTCTTCCTCAGGCTCTTCCATGGCCTCCCTCCTCAGGTTTGCCGTTTTTCAACTCAGCAACAATTCCTCTATGGAAGGTTCAATCTCGGTCATGA

mRNA sequence

GGTGGCGGGAGGGAGAAGCAAGAAGAGAGGGTGGGCGGCCCGATCCGTTCACATTTTTTGAAAATCTGGGCGTACACTTTGAAGTTCAGGAATAGAAAGAGAGGAAATGTATCATTTGCCATTTGAAATTAAATATATATCTAATCCCAGATGAAGAGGTTCAGTCCAAGAAAATTTGTGAAGCAAACTTGCAATGGGAGGTTTGGCGTAGGAAGCTTAATATCAGACACAAATGTTTTGTTGCACAAAGGTTGCATTGTATACATGTCTCCCCAAAACAAGGTTCTTCCTCAGGCTCTTCCATGGCCTCCCTCCTCAGGTTTGCCGTTTTTCAACTCAGCAACAATTCCTCTATGGAAGGTTCAATCTCGGTCATGA

Coding sequence (CDS)

ATGAAGAGGTTCAGTCCAAGAAAATTTGTGAAGCAAACTTGCAATGGGAGGTTTGGCGTAGGAAGCTTAATATCAGACACAAATGTTTTGTTGCACAAAGGTTGCATTGTATACATGTCTCCCCAAAACAAGGTTCTTCCTCAGGCTCTTCCATGGCCTCCCTCCTCAGGTTTGCCGTTTTTCAACTCAGCAACAATTCCTCTATGGAAGGTTCAATCTCGGTCATGA

Protein sequence

MKRFSPRKFVKQTCNGRFGVGSLISDTNVLLHKGCIVYMSPQNKVLPQALPWPPSSGLPFFNSATIPLWKVQSRS
Homology
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BLAST of CmaCh13G003550 vs. NCBI nr
Match: KAG6583710.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-14
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 17  RFGVGSLISDTNVLLHKGCIVYMSPQNKVLPQALPWPPSSG 58
           +FGVGSLISDTNVLLHKGCIVYMSPQNKVLPQALPWPPSSG
Sbjct: 114 KFGVGSLISDTNVLLHKGCIVYMSPQNKVLPQALPWPPSSG 154

The following BLAST results are available for this feature:
BLAST of CmaCh13G003550 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G003550 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G003550 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583710.11.5e-1497.56Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
BLAST of CmaCh13G003550 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G003550.1CmaCh13G003550.1mRNA