CmaCh13G003460 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G003460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein GL2-INTERACTING REPRESSOR 2
Location	Cma_Chr13: 4000686 .. 4002666 (+)
RNA-Seq Expression	CmaCh13G003460
Synteny	CmaCh13G003460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCAGCTGCTCGAAGTTGCAGCATCTTCGTCGAAAGCAAGTAAATCAAGTTATCATTTGTTAAGACGTATATATGCAGATTTCTTTTCCAATGGTTGTTTTCGTTTTTGAAAACTTCTGGATAGGTATTCCACGTCTGAACGGAATTCTTTTTGGTTAAAGAATCTCTTTCAAGTTGCTCTGGAACAATTAAGAGATCTTCTAGAAGGACGTTTAGGCCTTGAATCCTAGACTTTCCATAGGGGTCTGACCTTGCCGGAAGTAAGCCATAGGAGCAAATGAGTGACCTATTTTTGAGTCTCGAAGCAATATTTTCCTTAAATGCATATCCAGTTTATTCCAAATATCTCATTTTTTCTCCTTTACCAAATCTTCATTAACCTCGGTTTCTTATCTTTTCTATTCGGAACCTATTCGGTTGGTCATGCTGAATTTGACATCCCTTATCTCTTAAAACAACAAAAGAAGTAGGATGCATGAACCTCCCAACATGTTTTGTTTTATTGTTGCATATTGTTGCATTTTAATGTCATTTTGAAACATGTGATTTAGATGTCAAGACATTGGACATAAATTCTTGCCTAGCACGCCAAATGGCATAATAATTGGTGTAATAAAGTAGGGAGCAAATCATTTAAAGCAGACCTTTCGATCTTATCATCAGCCTATGGAATGTGGAATGGTTCTGTTCTTTGTTAGAACCCAAAAATTGAACGAAGCTCCTCAACGAACTCATACCACAAACACTCACTTAATTGCTTATTAACACACCTAACCAACTTTGCTTCGATGAGGAATGCTTGCACGCATCTTTGTGGCCAAAAGATGCTCTTCTCTTGTTCAATAATACCACGTCTCTTACCATGGTCCAAGCTAGAGGTTGATGTTCATATCTATACAAGTCTGGTACCAATCTGGTACCAAACAAGAAAAATTAAATGTATAAATTGATAAGACGAGTTTGTTGATGAAAGAAACCATTTTATGGTGTGGAGAGTGAGAAGAGTTGTACAACTTTTAAAAATTCAAACTCAATTAATTTAATGATATAATATTTTTCCAACAAATGAATTTGATACGTTTCTAGTCGTTTGTTTTTTCCTTTCCAAACATTTTGAATATGTTTTGTTGTTGTTTCTGTGTTTTATAGTCCTTGAACTTTCAATTATGTAATGGATTAGTCTTGCACTGGATTCATCCAACTTGGAATTCAATGAATCGATAGTTAACCATTTTTTTAACGATTGCCATCGCAAAGCTGGTCGATGCCCGCTGTTGAAAATATCCAAACCTGCTTACCCACCCCACCTCATACGACTAGTTTGGGGGAGGAGTTGGCTATTCGCCTTTTGGAGACACTTAAAAACCTCACATTTGAAGGAAGCATAGAGAGGCCTATCATAATTCATTATTATTGGTGTAGGTGACTGAACTTGATATTGTTGACAAGTCATATCATAAACTTGTGAATCAGAAGTCATATTGTATCCATATCAAAGGAGTTAATGAGTTGATTTTCAAAACCAAATTGGATATTCCTACCGGCAAAACTCAAAGGTCAATGTTCAAACTTTGTATTAAATGATAATTTAGACATTGTGAATTGTATACTCCATGTTTGGCCGTCTTTGATCTCTTATAAATCATATACAGCTTCCTATTGTAAGTACAAGATTTGATTGTTCATTTCTTCCTTCTTCTTCTTCTTCTCCGTTTTTCTATTGAAGAACTTTAAATTATGGGTCGAAACTTCAACAATCTGAAGTCAGAACCCATACTGCAAGATTTGTTGTTGGCAGGATCTAGCTCAAAAACCGAGGACGCTACGACATCAGTCATGGTGCTACTGGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTCGATCTCAAGTGTCCCAAATGTAATAACACTACGCTGCTTGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAAATCTTGTTGA

mRNA sequence

ATGACGCAGCTGCTCGAAGTTGCAGCATCTTCGTCGAAAGCAAGATCTAGCTCAAAAACCGAGGACGCTACGACATCAGTCATGGTGCTACTGGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTCGATCTCAAGTGTCCCAAATGTAATAACACTACGCTGCTTGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAAATCTTGTTGA

Coding sequence (CDS)

ATGACGCAGCTGCTCGAAGTTGCAGCATCTTCGTCGAAAGCAAGATCTAGCTCAAAAACCGAGGACGCTACGACATCAGTCATGGTGCTACTGGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTCGATCTCAAGTGTCCCAAATGTAATAACACTACGCTGCTTGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAAATCTTGTTGA

Protein sequence

MTQLLEVAASSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQASKKKSC

Homology

[Close]

BLAST of CmaCh13G003460 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-06
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 20  TEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 69
           T   TTS MVL+GC +CLMYVM S+ D KCPKC +T LLD +H  A  A+
Sbjct: 59  TSPETTS-MVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNAN 107

[Close]

BLAST of CmaCh13G003460 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-06
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 10 SSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD 60
          SS  +  +++ E+ T + MVL+GC +CLMYVM S  D KCPKC +T LLD
Sbjct: 42 SSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLD 91

[Close]

BLAST of CmaCh13G003460 vs. ExPASy TrEMBL
Match: A0A5D2LD87 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G121400v1 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 10  SSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 69
           SS     +  + +ATT+ MVLLGC +CLMYVM S+ D KCPKC +T LLD +++ A  AS
Sbjct: 44  SSEMEYDTGSSSEATTTSMVLLGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAAS 103

Query: 70  KK 71
            K
Sbjct: 104 TK 105

[Close]

BLAST of CmaCh13G003460 vs. ExPASy TrEMBL
Match: A0A6A3BEH2 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110213pilonHSYRG00047 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 18  SKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQASKK 71
           + + DAT+S MVL+GC +C MYVM S+ D KCPKC +T LLD +H+ A  A+ K
Sbjct: 57  ASSPDATSSPMVLVGCPRCFMYVMLSENDPKCPKCKSTVLLDFLHDTATTANVK 110

[Close]

BLAST of CmaCh13G003460 vs. ExPASy TrEMBL
Match: A0A4P1R0I2 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17077 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 5   LEVAASSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLA 64
           L V++ SS+  S   +E   T  M+L+GC +CLMYVM S+ D KCPKC +T LLD  N  
Sbjct: 44  LTVSSHSSEGSSCVSSEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLN-- 103

Query: 65  NQASKKKS 73
           N+ + KK+
Sbjct: 104 NEENNKKT 109

[Close]

BLAST of CmaCh13G003460 vs. ExPASy TrEMBL
Match: A0A0D2Q5L5 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G398500 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-05
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 10  SSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 69
           SS     +  + +ATT+ MVL+GC +CLMYVM S+ D KCPKC +T LLD +++ A  AS
Sbjct: 44  SSEMEDDTGSSSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAAS 103

Query: 70  KK 71
            K
Sbjct: 104 TK 105

[Close]

BLAST of CmaCh13G003460 vs. ExPASy TrEMBL
Match: A0A7J9CEH7 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_009299 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-05
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 10  SSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 69
           SS     +  + +ATT+ MVL+GC +CLMYVM S+ D KCPKC +T LLD +++ A  AS
Sbjct: 44  SSEMEDDAGSSSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAAS 103

Query: 70  KK 71
            K
Sbjct: 104 TK 105

[Close]

BLAST of CmaCh13G003460 vs. NCBI nr
Match: KAG6583700.1 (hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019351.1 hypothetical protein SDJN02_18311 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.6 bits (283), Expect = 7.1e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 15 RSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQASKK 71
          RSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQASKK
Sbjct: 17 RSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQASKK 72

[Close]

BLAST of CmaCh13G003460 vs. NCBI nr
Match: TYH76956.1 (hypothetical protein ES332_D04G121400v1 [Gossypium tomentosum])

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-05
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 10  SSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 69
           SS     +  + +ATT+ MVLLGC +CLMYVM S+ D KCPKC +T LLD +++ A  AS
Sbjct: 44  SSEMEYDTGSSSEATTTSMVLLGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAAS 103

Query: 70  KK 71
            K
Sbjct: 104 TK 105

[Close]

BLAST of CmaCh13G003460 vs. NCBI nr
Match: KAE8713169.1 (hypothetical protein F3Y22_tig00110213pilonHSYRG00047 [Hibiscus syriacus])

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 18  SKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQASKK 71
           + + DAT+S MVL+GC +C MYVM S+ D KCPKC +T LLD +H+ A  A+ K
Sbjct: 57  ASSPDATSSPMVLVGCPRCFMYVMLSENDPKCPKCKSTVLLDFLHDTATTANVK 110

[Close]

BLAST of CmaCh13G003460 vs. NCBI nr
Match: XP_019465313.1 (PREDICTED: uncharacterized protein LOC109363505 [Lupinus angustifolius] >OIV99267.1 hypothetical protein TanjilG_17077 [Lupinus angustifolius])

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 5   LEVAASSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLA 64
           L V++ SS+  S   +E   T  M+L+GC +CLMYVM S+ D KCPKC +T LLD  N  
Sbjct: 44  LTVSSHSSEGSSCVSSEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLN-- 103

Query: 65  NQASKKKS 73
           N+ + KK+
Sbjct: 104 NEENNKKT 109

[Close]

BLAST of CmaCh13G003460 vs. NCBI nr
Match: KAB2034830.1 (hypothetical protein ES319_D04G111100v1 [Gossypium barbadense] >PPD96492.1 hypothetical protein GOBAR_DD06479 [Gossypium barbadense] >TYG73650.1 hypothetical protein ES288_D04G118600v1 [Gossypium darwinii])

HSP 1 Score: 57.0 bits (136), Expect = 7.9e-05
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 10  SSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 69
           SS     +  + +ATT+ MVL+GC +CLMYVM S+ D KCPKC +T LLD +++ A  AS
Sbjct: 44  SSEMEDDTGSSSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAAS 103

Query: 70  KK 71
            K
Sbjct: 104 TK 105

[Close]

BLAST of CmaCh13G003460 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 1.8e-07
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 10 SSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD 60
          SS  +  +++ E+ T + MVL+GC +CLMYVM S  D KCPKC +T LLD
Sbjct: 42 SSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLD 91

[Close]

BLAST of CmaCh13G003460 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 1.8e-07
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 20  TEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 69
           T   TTS MVL+GC +CLMYVM S+ D KCPKC +T LLD +H  A  A+
Sbjct: 59  TSPETTS-MVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNAN 107

[Close]

BLAST of CmaCh13G003460 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 5.5e-04
Identity = 25/72 (34.72%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 2  TQLLEVAASSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSS-KFDLKCPKCNNTTLLDV 61
          + LL  ++SSS     ++        MV++GC  C+MY+++S + D +CP+CN+  LLD 
Sbjct: 23 SSLLTESSSSSLCSEEAEGGGGEAKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDF 82

Query: 62 HNLANQASKKKS 73
            L    SKK +
Sbjct: 83 --LTGNHSKKST 92

The following BLAST results are available for this feature:

BLAST of CmaCh13G003460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNI1	2.6e-06	58.00	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]
Q9SRN4	2.6e-06	52.00	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]

BLAST of CmaCh13G003460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2LD87	1.7e-05	51.61	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G121400v1 P...	[more]
A0A6A3BEH2	2.9e-05	53.70	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110213pilon...	[more]
A0A4P1R0I2	2.9e-05	47.06	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17077 PE=4 S...	[more]
A0A0D2Q5L5	3.8e-05	50.00	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G398500 PE=4 ...	[more]
A0A7J9CEH7	3.8e-05	50.00	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_009299 PE=4 ...	[more]

BLAST of CmaCh13G003460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583700.1	7.1e-22	100.00	hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYH76956.1	3.5e-05	51.61	hypothetical protein ES332_D04G121400v1 [Gossypium tomentosum]	[more]
KAE8713169.1	6.0e-05	53.70	hypothetical protein F3Y22_tig00110213pilonHSYRG00047 [Hibiscus syriacus]	[more]
XP_019465313.1	6.0e-05	47.06	PREDICTED: uncharacterized protein LOC109363505 [Lupinus angustifolius] >OIV9926...	[more]
KAB2034830.1	7.9e-05	50.00	hypothetical protein ES319_D04G111100v1 [Gossypium barbadense] >PPD96492.1 hypot...	[more]

BLAST of CmaCh13G003460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11600.1	1.8e-07	52.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G06270.1	1.8e-07	58.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G22270.1	5.5e-04	34.72	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177:SF51	GB\|AAF02129.1	coord: 14..70
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G003460.1	CmaCh13G003460.1	mRNA