CmaCh13G002960 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G002960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	alpha/beta-Hydrolases superfamily protein
Location	Cma_Chr13: 2796705 .. 2797552 (-)
RNA-Seq Expression	CmaCh13G002960
Synteny	CmaCh13G002960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATGCCAACGCAAGTAACGAAAACAACACTTGGAGGAAAGAAATATGTAAATTGTTTGCATAAATACGTAACTAATTGCTTAAATACTTTTAGTATATACTTTACTCTCTTAAAGTCGCATACATGGAATTGCCTTTATTAGGATTTGCTATTGAGTTCTTGATAATGAATGGAGAATATGATATGGGTTATCCCATTCAGGCTATAAAGGAACCAAACCATTGGTTGTCACTCCACACAGATCCACGCTGCCCTTCCACGGTCCTCACTTCGTTCTGGTGCGTTTCAATTCCCTCCTTTTATTCTTTTTTAATCTTATTCATTTTCTTCTTTTGGTTATTTAAGTTGTCTGAGTTTCTCGATTATAGGTCGTTGTTATAAACATGATATGTTAATGGAGATAGGGTTTCTTAATGAACTTCTCCTTAATTAATCAATGTTGGACTTAAACGATTTTCAAACAATCCAAGAAAATATTGAAGACATATTCTTCTCTAGAGTCCTCGAACGAAGTACACATTGAATTTCCTCTTAAGTAGTCATATCTATTTGTTTGACATTATTATACTACTCTTCTTATCTAGTGTAGAATACATGAAAGTAATTTTTTTTTTCTTTCAGATAATGATTACACCAATAGTTGTAGCTTTTGCCGTCGGTTTCGTTGGATGGGTTTATCAAGCACTGAAACCACCACCCTAAGGATATGTGGATCACCAAATGGTCCTCCACTTACTTATTGTAGAGTGAAACTCGATGATGGAAGACATTTGGCCTACCAAGAATTTGGAGTTCCCGAGGAAAAGGCGCAAATACAAGATCGTTCTTTCTCATGGCTATAA

mRNA sequence

ATGGCAAATGCCAACGCAAATAATGATTACACCAATAGTTGTAGCTTTTGCCGTCGGTTTCGTTGGATGGGTTTATCAAGCACTGAAACCACCACCCTAAGGATATGTGGATCACCAAATGGTCCTCCACTTACTTATTGTAGAGTGAAACTCGATGATGGAAGACATTTGGCCTACCAAGAATTTGGAGTTCCCGAGGAAAAGGCGCAAATACAAGATCGTTCTTTCTCATGGCTATAA

Coding sequence (CDS)

ATGGCAAATGCCAACGCAAATAATGATTACACCAATAGTTGTAGCTTTTGCCGTCGGTTTCGTTGGATGGGTTTATCAAGCACTGAAACCACCACCCTAAGGATATGTGGATCACCAAATGGTCCTCCACTTACTTATTGTAGAGTGAAACTCGATGATGGAAGACATTTGGCCTACCAAGAATTTGGAGTTCCCGAGGAAAAGGCGCAAATACAAGATCGTTCTTTCTCATGGCTATAA

Protein sequence

MANANANNDYTNSCSFCRRFRWMGLSSTETTTLRICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQIQDRSFSWL

Homology

[Close]

BLAST of CmaCh13G002960 vs. ExPASy TrEMBL
Match: A0A6J1I3C9 (uncharacterized protein LOC111469259 OS=Cucurbita maxima OX=3661 GN=LOC111469259 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQ 71
          +ICGSPNGPPLT  RVKL+DGRHLAY+EFGVP+EKAQ
Sbjct: 27 KICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQ 63

[Close]

BLAST of CmaCh13G002960 vs. ExPASy TrEMBL
Match: A0A6J1HYK6 (uncharacterized protein LOC111469256 OS=Cucurbita maxima OX=3661 GN=LOC111469256 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQ 71
          +ICGSPNGPPLT  RVKL+DGRHLAY+EFGVP+EKAQ
Sbjct: 27 KICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQ 63

[Close]

BLAST of CmaCh13G002960 vs. ExPASy TrEMBL
Match: A0A6J1EVY6 (uncharacterized protein LOC111438511 OS=Cucurbita moschata OX=3662 GN=LOC111438511 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQ 71
          +ICGSPNGPPLT  RVKL+DGRHLAY+EFGVP+EKAQ
Sbjct: 27 KICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQ 63

[Close]

BLAST of CmaCh13G002960 vs. ExPASy TrEMBL
Match: A0A6J1F1J0 (uncharacterized protein LOC111438510 OS=Cucurbita moschata OX=3662 GN=LOC111438510 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQ 71
          +ICGSPNGPPLT  RVKL+DGRHLAY+EFGVP+EKAQ
Sbjct: 56 KICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQ 92

[Close]

BLAST of CmaCh13G002960 vs. ExPASy TrEMBL
Match: A0A6J1F0Z1 (uncharacterized protein LOC111438508 OS=Cucurbita moschata OX=3662 GN=LOC111438508 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQ 71
          +ICGSPNGPPLT  RVKL+DGRHLAY+EFGVP+EKAQ
Sbjct: 27 KICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQ 63

[Close]

BLAST of CmaCh13G002960 vs. NCBI nr
Match: KAG6583652.1 (hypothetical protein SDJN03_19584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-10
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQ 71
          +ICG PNGPPLT CRVKL+DGRHLAY+EFGVP+EKAQ
Sbjct: 27 KICGLPNGPPLTSCRVKLNDGRHLAYREFGVPKEKAQ 63

[Close]

BLAST of CmaCh13G002960 vs. NCBI nr
Match: XP_022970247.1 (uncharacterized protein LOC111469256 [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQ 71
          +ICGSPNGPPLT  RVKL+DGRHLAY+EFGVP+EKAQ
Sbjct: 27 KICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQ 63

[Close]

BLAST of CmaCh13G002960 vs. NCBI nr
Match: KAG6583653.1 (hypothetical protein SDJN03_19585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQ 71
          +ICGSPNGPPLT  RVKL+DGRHLAY+EFGVP+EKAQ
Sbjct: 27 KICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQ 63

[Close]

BLAST of CmaCh13G002960 vs. NCBI nr
Match: KAG6583650.1 (hypothetical protein SDJN03_19582, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQ 71
          +ICGSPNGPPLT  RVKL+DGRHLAY+EFGVP+EKAQ
Sbjct: 27 KICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQ 63

[Close]

BLAST of CmaCh13G002960 vs. NCBI nr
Match: XP_023520281.1 (uncharacterized protein LOC111783591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQ 71
          +ICGSPNGPPLT  RVKL+DGRHLAY+EFGVP+EKAQ
Sbjct: 27 KICGSPNGPPLTSRRVKLNDGRHLAYREFGVPKEKAQ 63

[Close]

BLAST of CmaCh13G002960 vs. TAIR 10
Match: AT1G74300.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-10
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 35 ICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKAQ 71
          +CGSP GPP+T  R+KL DGRHLAY+E+G+P EKA+
Sbjct: 31 LCGSPGGPPITAPRIKLRDGRHLAYKEYGLPREKAK 66

[Close]

BLAST of CmaCh13G002960 vs. TAIR 10
Match: AT1G74290.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKA 70
          ++CGS +GPP+T  R+KL DGR+LAY+E G+P EKA
Sbjct: 47 KLCGSSSGPPITAPRIKLQDGRYLAYKEHGLPREKA 82

[Close]

BLAST of CmaCh13G002960 vs. TAIR 10
Match: AT1G74280.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKA 70
          ++CGS  GPP+T  R+KL DGR+LAY+E G+P EKA
Sbjct: 47 KLCGSSGGPPITAPRIKLQDGRYLAYKEHGLPREKA 82

[Close]

BLAST of CmaCh13G002960 vs. TAIR 10
Match: AT5G22460.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-08
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKA 70
          RICG PNGPP+T  R+KL DGR+LAY+E GV  + A
Sbjct: 27 RICGHPNGPPVTSPRIKLSDGRYLAYRESGVDRDNA 62

[Close]

BLAST of CmaCh13G002960 vs. TAIR 10
Match: AT5G22460.2 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-08
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 34 RICGSPNGPPLTYCRVKLDDGRHLAYQEFGVPEEKA 70
          RICG PNGPP+T  R+KL DGR+LAY+E GV  + A
Sbjct: 27 RICGHPNGPPVTSPRIKLSDGRYLAYRESGVDRDNA 62

The following BLAST results are available for this feature:

BLAST of CmaCh13G002960 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G002960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I3C9	1.2e-09	83.78	uncharacterized protein LOC111469259 OS=Cucurbita maxima OX=3661 GN=LOC111469259...	[more]
A0A6J1HYK6	1.2e-09	83.78	uncharacterized protein LOC111469256 OS=Cucurbita maxima OX=3661 GN=LOC111469256...	[more]
A0A6J1EVY6	1.2e-09	83.78	uncharacterized protein LOC111438511 OS=Cucurbita moschata OX=3662 GN=LOC1114385...	[more]
A0A6J1F1J0	1.2e-09	83.78	uncharacterized protein LOC111438510 OS=Cucurbita moschata OX=3662 GN=LOC1114385...	[more]
A0A6J1F0Z1	1.2e-09	83.78	uncharacterized protein LOC111438508 OS=Cucurbita moschata OX=3662 GN=LOC1114385...	[more]

BLAST of CmaCh13G002960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583652.1	5.2e-10	83.78	hypothetical protein SDJN03_19584, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022970247.1	2.6e-09	83.78	uncharacterized protein LOC111469256 [Cucurbita maxima]	[more]
KAG6583653.1	2.6e-09	83.78	hypothetical protein SDJN03_19585, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6583650.1	2.6e-09	83.78	hypothetical protein SDJN03_19582, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023520281.1	2.6e-09	83.78	uncharacterized protein LOC111783591 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh13G002960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74300.1	3.2e-10	66.67	alpha/beta-Hydrolases superfamily protein	[more]
AT1G74290.1	1.4e-08	61.11	alpha/beta-Hydrolases superfamily protein	[more]
AT1G74280.1	1.8e-08	61.11	alpha/beta-Hydrolases superfamily protein	[more]
AT5G22460.1	2.3e-08	63.89	alpha/beta-Hydrolases superfamily protein	[more]
AT5G22460.2	2.3e-08	63.89	alpha/beta-Hydrolases superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G002960.1	CmaCh13G002960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane