CmaCh13G001770 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G001770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Histone H4
Location	Cma_Chr13: 1353954 .. 1355010 (-)
RNA-Seq Expression	CmaCh13G001770
Synteny	CmaCh13G001770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCGCTAGCAAGATCGATCCGGTCAAGGCAAACTAAGCTGTGTGTAAATGAGAGATTTGTGGTGTTGTTTACTTGTGTTTTCAAGTCAATGAGGAATTGGCTTCAAAGGCTTTCTTTTTGGTTCTTTTTTCATGGCGTTTTGCAGAAGCAAGCTGCAATGTTCTTCCCAGTGGTGGATGAGTTCATTGTGTCCATTTGTGAGAAAGTTCATGTTATGAAGATTTGTGTTTTATAGAACAAATCACTCGTACGTTCGGTTATTCAATTAAACTACCAAAAATTTGAATCACAAAAAAACACTGATATTTAACAATCATAATGAAAGTCATCGTTTATTCTAAACCAATTTGGCAATTTAATTAGCATAATCGAATCCCATCGCAATCGAAAATGAAAGCGGGAGATCGAAAACTTCTAAAATTTTCAAATATCTCTTGAATTGTCAGAGAAAGAGATTGTGAAATTTTCATCTGGAAAAGCAATGCATGAAGATTACATCTGAAAATGATCTAAAATACTCAGAGAGTATCGTTTAGAAATCAGATCCAACAAACAGAAGCATGGTAACTTCAGAGTCTGAAACAAACAGTTTCTAATTAGACAAAAGAAGATTTCCAGCTGCAGAATAATCCATCAAACGAGAGATACGATTAGCTCGCTGCTGATCGAAATCAACGTTCAATGCTAACATAATCAGAAATAATATACAGTTTTTCTCCAGAATCAGAACCAGTTTCCACATTCAAACCACCGAAATCATTTAATCTCCAATATCCAAGCCCTAGATCCTAAAATCCCTAACCTCCAAAGCCGTAAAGAGTGCGACCTTGCCTCTTAAGCGCATAAACAACATCCATGGCGGTGACGGTCTTCCGGCGAGCGTGCTCGGTGTAGGTGACGGCATCGCGAATAACATTCTCGAGGAAAATCTTGAGAACGCCGCGAGTCTCCTCGTAGATCAGGCCGCTGATACGCTTTACGCCGCCTCGCCTGGCCAGACGCCGAATCGCCGGCTTAGTGATTCCTTGAATGTTATCTCTCAGAACCTTCCG

mRNA sequence

ATGGTTTCGCTAGCAAGATCGATCCGGTCAAGGCAAACTAAGCTGTGTAAGCAAGCTGCAATGTTCTTCCCAGTGGTGGATGAGTTCATTGTGTCCATTTGTGAGAAAGTTCATATCCTAAAATCCCTAACCTCCAAAGCCGTAAAGAGTGCGACCTTGCCTCTTAAGCGCATAAACAACATCCATGGCGGTGACGGTCTTCCGGCGAGCGTGCTCGGTGTAGGTGACGGCATCGCGAATAACATTCTCGAGGAAAATCTTGAGAACGCCGCGAGTCTCCTCGTAGATCAGGCCGCTGATACGCTTTACGCCGCCTCGCCTGGCCAGACGCCGAATCGCCGGCTTAGTGATTCCTTGAATGTTATCTCTCAGAACCTTCCG

Coding sequence (CDS)

ATGGTTTCGCTAGCAAGATCGATCCGGTCAAGGCAAACTAAGCTGTGTAAGCAAGCTGCAATGTTCTTCCCAGTGGTGGATGAGTTCATTGTGTCCATTTGTGAGAAAGTTCATATCCTAAAATCCCTAACCTCCAAAGCCGTAAAGAGTGCGACCTTGCCTCTTAAGCGCATAAACAACATCCATGGCGGTGACGGTCTTCCGGCGAGCGTGCTCGGTGTAGGTGACGGCATCGCGAATAACATTCTCGAGGAAAATCTTGAGAACGCCGCGAGTCTCCTCGTAGATCAGGCCGCTGATACGCTTTACGCCGCCTCGCCTGGCCAGACGCCGAATCGCCGGCTTAGTGATTCCTTGAATGTTATCTCTCAGAACCTTCCG

Protein sequence

MVSLARSIRSRQTKLCKQAAMFFPVVDEFIVSICEKVHILKSLTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTLYAASPGQTPNRRLSDSLNVISQNLP

Homology

[Close]

BLAST of CmaCh13G001770 vs. ExPASy TrEMBL
Match: A0A5A7R5M6 (Histone H4 OS=Striga asiatica OX=4170 GN=STAS_30195 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.6e-19
Identity = 50/87 (57.47%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 41  KSLTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAAD 100
           K+L +K VK A LPL+RI+++HGG  LPAS+L VGDG+ +++LEE+L++A SLLVD+AAD
Sbjct: 35  KTLAAKPVKRAALPLERIHHVHGGHRLPASMLRVGDGVTDDVLEEDLQDATSLLVDEAAD 94

Query: 101 TLYAASPGQTPNRRLSDSLNVISQNLP 128
            L+AAS G+ P RRL D+L+VI+++ P
Sbjct: 95  ALHAASTGKPPYRRLGDALDVIAKHFP 121

[Close]

BLAST of CmaCh13G001770 vs. ExPASy TrEMBL
Match: A0A0E0DSL3 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 47/83 (56.63%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 45  SKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTLYA 104
           ++AV+ A L L+R++++HGGDGL A VLGVGDG+A+++LEE+LE+AA LLVD+  D L+A
Sbjct: 60  AEAVEGAALALERVDDVHGGDGLAAGVLGVGDGVADDVLEEDLEHAAGLLVDEPGDALHA 119

Query: 105 ASPGQTPNRRLSDSLNVISQNLP 128
           A P Q P+RRL D L+V++++LP
Sbjct: 120 APPRQPPDRRLGDPLDVVAEHLP 142

[Close]

BLAST of CmaCh13G001770 vs. ExPASy TrEMBL
Match: A0A0E0CUB3 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18
Identity = 48/82 (58.54%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 45  SKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTLYA 104
           ++AV+ ATL L+R++++HGGDGL A VL VGDG+A+++LEE+LE+AA LLVDQ  D L+A
Sbjct: 24  AEAVEGATLALERVDDVHGGDGLAAGVLRVGDGVADDVLEEDLEHAAGLLVDQPGDALHA 83

Query: 105 ASPGQTPNRRLSDSLNVISQNL 127
           A P Q P+RRL D+L+V++Q+L
Sbjct: 84  APPRQPPDRRLGDALDVVAQHL 105

[Close]

BLAST of CmaCh13G001770 vs. ExPASy TrEMBL
Match: A0A453CQ49 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.2e-18
Identity = 47/83 (56.63%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 43  LTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTL 102
           L S+AV+ A L L+ ++++HGGDGL A VLGVGDG+A+++LEE+LE+AA LLVD+A D L
Sbjct: 38  LASEAVEGAALALEGVDDVHGGDGLAAGVLGVGDGVADDVLEEDLEDAAGLLVDEAGDAL 97

Query: 103 YAASPGQTPNRRLSDSLNVISQN 126
           +AA P Q P+RRL D+L+V++++
Sbjct: 98  HAAPPRQPPDRRLGDALDVVAED 120

[Close]

BLAST of CmaCh13G001770 vs. ExPASy TrEMBL
Match: A0A7I8L0J0 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_10014237 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.2e-18
Identity = 48/84 (57.14%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 43  LTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTL 102
           LT+K+V+  +LPL+ +++IHGGDGLPA VL VG G+A+++L+E+LE+ A LLVD+AAD+L
Sbjct: 57  LTAKSVERPSLPLEGVDDIHGGDGLPAGVLRVGHGVADDVLQEDLEHPAGLLVDEAADSL 116

Query: 103 YAASPGQTPNRRLSDSLNVISQNL 127
           +AA P Q P+RRL D L+V+ Q+L
Sbjct: 117 HAAPPRQPPDRRLRDPLDVVPQDL 140

[Close]

BLAST of CmaCh13G001770 vs. NCBI nr
Match: KAF7825438.1 (histone H4 [Senna tora])

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-20
Identity = 56/90 (62.22%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 40  LKSLTS--KAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQ 99
           +K+L S  +AV+S  LPL+ I++IHGGDGLPASVLGV DG+A+N+LEE+L++ ASLLVD+
Sbjct: 31  IKTLISATEAVQSPALPLESIDDIHGGDGLPASVLGVRDGVADNVLEEDLQHTASLLVDE 90

Query: 100 AADTLYAASPGQTPNRRLSDSLNVISQNLP 128
            A+ L A+S  QTPNRRL DSL+VI+++LP
Sbjct: 91  TANPLNASSSSQTPNRRLRDSLDVIAKHLP 120

[Close]

BLAST of CmaCh13G001770 vs. NCBI nr
Match: KAG5127215.1 (hypothetical protein JHK82_028050 [Glycine max] >KAG5151827.1 hypothetical protein JHK84_028299 [Glycine max])

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-19
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 41  KSLTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAAD 100
           KSLT++ ++   LPL+ +NN+H  DGL ASVL +GD +AN++LEE+LEN AS  +D+  D
Sbjct: 9   KSLTTETIEGPALPLESVNNVHSSDGLAASVLSIGDSVANDVLEEDLENTASFFIDETTD 68

Query: 101 TLYAASPGQTPNRRLSDSLNVISQNL 127
           TL+A +  QTPNR L DSLNVI QNL
Sbjct: 69  TLHATTSRQTPNRGLRDSLNVIPQNL 94

[Close]

BLAST of CmaCh13G001770 vs. NCBI nr
Match: GER52712.1 (histone H4 [Striga asiatica])

HSP 1 Score: 104.4 bits (259), Expect = 7.5e-19
Identity = 50/87 (57.47%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 41  KSLTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAAD 100
           K+L +K VK A LPL+RI+++HGG  LPAS+L VGDG+ +++LEE+L++A SLLVD+AAD
Sbjct: 35  KTLAAKPVKRAALPLERIHHVHGGHRLPASMLRVGDGVTDDVLEEDLQDATSLLVDEAAD 94

Query: 101 TLYAASPGQTPNRRLSDSLNVISQNLP 128
            L+AAS G+ P RRL D+L+VI+++ P
Sbjct: 95  ALHAASTGKPPYRRLGDALDVIAKHFP 121

[Close]

BLAST of CmaCh13G001770 vs. NCBI nr
Match: KAG4948179.1 (hypothetical protein JHK86_041418 [Glycine max] >KAG5104389.1 hypothetical protein JHK82_041359 [Glycine max] >KAG5115513.1 hypothetical protein JHK84_041626 [Glycine max])

HSP 1 Score: 101.7 bits (252), Expect = 4.9e-18
Identity = 50/86 (58.14%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 41  KSLTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAAD 100
           K+LT+K+V+  +LPLKRINN+H  +GLP SVL V +G+ ++IL+E+LEN ASLLVDQ AD
Sbjct: 20  KTLTTKSVEGPSLPLKRINNVHSRNGLPPSVLRVSNGVTDDILQEDLENTASLLVDQTAD 79

Query: 101 TLYAASPGQTPNRRLSDSLNVISQNL 127
           TL+A    QT NR L +SLNV++++L
Sbjct: 80  TLHATPASQTTNRWLRNSLNVVAEHL 105

[Close]

BLAST of CmaCh13G001770 vs. NCBI nr
Match: CAA7403559.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-17
Identity = 48/84 (57.14%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 43  LTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTL 102
           LT+K+V+  +LPL+ +++IHGGDGLPA VL VG G+A+++L+E+LE+ A LLVD+AAD+L
Sbjct: 57  LTAKSVERPSLPLEGVDDIHGGDGLPAGVLRVGHGVADDVLQEDLEHPAGLLVDEAADSL 116

Query: 103 YAASPGQTPNRRLSDSLNVISQNL 127
           +AA P Q P+RRL D L+V+ Q+L
Sbjct: 117 HAAPPRQPPDRRLRDPLDVVPQDL 140

The following BLAST results are available for this feature:

BLAST of CmaCh13G001770 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G001770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7R5M6	3.6e-19	57.47	Histone H4 OS=Striga asiatica OX=4170 GN=STAS_30195 PE=4 SV=1	[more]
A0A0E0DSL3	1.4e-18	56.63	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]
A0A0E0CUB3	2.4e-18	58.54	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]
A0A453CQ49	5.2e-18	56.63	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S...	[more]
A0A7I8L0J0	5.2e-18	57.14	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_10014237 PE=4 SV...	[more]

BLAST of CmaCh13G001770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7825438.1	5.2e-20	62.22	histone H4 [Senna tora]	[more]
KAG5127215.1	2.6e-19	56.98	hypothetical protein JHK82_028050 [Glycine max] >KAG5151827.1 hypothetical prote...	[more]
GER52712.1	7.5e-19	57.47	histone H4 [Striga asiatica]	[more]
KAG4948179.1	4.9e-18	58.14	hypothetical protein JHK86_041418 [Glycine max] >KAG5104389.1 hypothetical prote...	[more]
CAA7403559.1	1.1e-17	57.14	unnamed protein product [Spirodela intermedia]	[more]

BLAST of CmaCh13G001770 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47749	FAMILY NOT NAMED	coord: 41..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G001770.1	CmaCh13G001770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity