CmaCh13G001570 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G001570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Histone H2A
Location	Cma_Chr13: 1190640 .. 1192324 (+)
RNA-Seq Expression	CmaCh13G001570
Synteny	CmaCh13G001570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGCACCCATTTCTGAGTTCGTCTCCATCCCCAAATGCTCGTTGTTTCATACCGCTCTATAAAGACATTACCTCAATTTCAGAGCTTCTTATCGTCATATCCACTGATCCAAATCTGTTTTCCTGTAATCTTTGCAACTGCCTTTGATTATCCGGCGACCAGGGTCAAGTTCCGATGGATTCTAGCGCTAAGTTAAAGAAGGGAGCAGGTGGAAGAAAGGGCGGCGGTCCGAAGAAGAAGCCAGTTTCCCGCTCCGTTAAGGCCGGTCTCCAGTTCCCCGTCGGTAGAATTGGTCGGTACTTGAAGAATGGCCGGTATGCTCGACGTGTCGGTACCGGAGCTCCGGTCTACTTGGCAGCCGTTCTTGAGTATCTCGCCGCCGAGGTACTTGCTGAACTCCTTCTGCTTTCTAGATCTGTGTTTCTTTCTGTTGGATGTGGATGGTTAGGGATTCGAATTTAATTCTGGAACTAGATTCTTAACTCATCGATTGGCTGTTGTTACGTTGAATTTTGCTAGATCATTATGAACTATTTGATTTGAGTAAAAGATTAGGAAATTCAAAGAACTGATGAATTTGAAATGAAATATCTCGTGAATTTTAGCTTCGGTTGACTAATTATTGCTTTTGACATGTGTTTGCTGTAGCTTGGAACATAATTATTGATTGGAATGTTGAATTCAACTTGATTTCCTTATTGGATTTGGTGAGCATGAATATGATTGAATCCTTGGGTATATGGATCTTAGATTTCAAATAAACATCGAAACCTATGCTTTTGATCTCTAATCTATCACGAACGGGGGCAAATTAGGTGTTGGAATTGGCTGGAAATGCAGCCCGAGACAACAAGAAGAACAGAATAATTCCTAGGCATGTATTGTTGGCCATAAGAAACGATGAAGAGCTTGGGAAATTGCTAGCCGGCGTAACGATTGCACATGGTGGTGTTCTTCCAAACATAAACCCAGTTCTGTTGCCTAAGAAGAGTGAAAAAGCAGCCACTAAAGAACCTAAATCTCCATCAAAGGCCTCTAAGGCTACAAAATCCCCAAAAAAGGCTTAGGGTTTTTTGTTCATCTGAAAATCTTTGACTTGTTCTTTGCCCATTTGTATGTACTTTGTTGGCTTTTTAGAGTCGTCTTCTGTGTTGTTTATTAATGTAAGCTCAAACCTGATCAATTTGAACACTCTGTATCACTCCCATCATCATCTTAATGATCAATCCTTGTACTGGTTATATGATTGTTTAGCCATCAATTCTTTTTCTTCATTTTGCTAATCTTTGATGGGCTTATCTGAAAGTTACTTCGTTTTTTTTTTTTTTTTGGGTTAGGAAACACGGGCCTTTACCATAGTATAATATTATCTATTTTGAGCCTAAGTTTTTATAGTTTTATCTTTAGTTTCTCTAGAAGTCATGGTATCAATGAAGATGAAGATGTATTCCTTACATATAAACCTATGATCATCTCACCCAATGTGGGTTTCTCTTTCATTGATTTTTCAACAATCCTCTTATTCAACAAAGTACACCATAGAACTTCCTCTCAAGCCTATGGAGCTCTTGAATAGCTTCCCTTTAATTGAGGTTTGTTCGACACTTGTGTTACTTTTGATTACACATTTGAAACTTACAATTTGATTGTTAGACACTTGAAGATTTTATTGACATGACTAAGG

mRNA sequence

CGTGCACCCATTTCTGAGTTCGTCTCCATCCCCAAATGCTCGTTGTTTCATACCGCTCTATAAAGACATTACCTCAATTTCAGAGCTTCTTATCGTCATATCCACTGATCCAAATCTGTTTTCCTGTAATCTTTGCAACTGCCTTTGATTATCCGGCGACCAGGGTCAAGTTCCGATGGATTCTAGCGCTAAGTTAAAGAAGGGAGCAGGTGGAAGAAAGGGCGGCGGTCCGAAGAAGAAGCCAGTTTCCCGCTCCGTTAAGGCCGGTCTCCAGTTCCCCGTCGGTAGAATTGGTCGGTACTTGAAGAATGGCCGGTATGCTCGACGTGTCGGTACCGGAGCTCCGGTCTACTTGGCAGCCGTTCTTGAGTATCTCGCCGCCGAGGTGTTGGAATTGGCTGGAAATGCAGCCCGAGACAACAAGAAGAACAGAATAATTCCTAGGCATGTATTGTTGGCCATAAGAAACGATGAAGAGCTTGGGAAATTGCTAGCCGGCGTAACGATTGCACATGGTGGTGTTCTTCCAAACATAAACCCAGTTCTGTTGCCTAAGAAGAGTGAAAAAGCAGCCACTAAAGAACCTAAATCTCCATCAAAGGCCTCTAAGGCTACAAAATCCCCAAAAAAGGCTTAGGGTTTTTTGTTCATCTGAAAATCTTTGACTTGTTCTTTGCCCATTTGTATGTACTTTGTTGGCTTTTTAGAGTCGTCTTCTGTGTTGTTTATTAATGTAAGCTCAAACCTGATCAATTTGAACACTCTGTATCACTCCCATCATCATCTTAATGATCAATCCTTGTACTGGTTATATGATTGTTTAGCCATCAATTCTTTTTCTTCATTTTGCTAATCTTTGATGGGCTTATCTGAAAGTTACTTCGTTTTTTTTTTTTTTTTGGGTTAGGAAACACGGGCCTTTACCATAGTATAATATTATCTATTTTGAGCCTAAGTTTTTATAGTTTTATCTTTAGTTTCTCTAGAAGTCATGGTATCAATGAAGATGAAGATGTATTCCTTACATATAAACCTATGATCATCTCACCCAATGTGGGTTTCTCTTTCATTGATTTTTCAACAATCCTCTTATTCAACAAAGTACACCATAGAACTTCCTCTCAAGCCTATGGAGCTCTTGAATAGCTTCCCTTTAATTGAGGTTTGTTCGACACTTGTGTTACTTTTGATTACACATTTGAAACTTACAATTTGATTGTTAGACACTTGAAGATTTTATTGACATGACTAAGG

Coding sequence (CDS)

ATGGATTCTAGCGCTAAGTTAAAGAAGGGAGCAGGTGGAAGAAAGGGCGGCGGTCCGAAGAAGAAGCCAGTTTCCCGCTCCGTTAAGGCCGGTCTCCAGTTCCCCGTCGGTAGAATTGGTCGGTACTTGAAGAATGGCCGGTATGCTCGACGTGTCGGTACCGGAGCTCCGGTCTACTTGGCAGCCGTTCTTGAGTATCTCGCCGCCGAGGTGTTGGAATTGGCTGGAAATGCAGCCCGAGACAACAAGAAGAACAGAATAATTCCTAGGCATGTATTGTTGGCCATAAGAAACGATGAAGAGCTTGGGAAATTGCTAGCCGGCGTAACGATTGCACATGGTGGTGTTCTTCCAAACATAAACCCAGTTCTGTTGCCTAAGAAGAGTGAAAAAGCAGCCACTAAAGAACCTAAATCTCCATCAAAGGCCTCTAAGGCTACAAAATCCCCAAAAAAGGCTTAG

Protein sequence

MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAATKEPKSPSKASKATKSPKKA

Homology

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BLAST of CmaCh13G001570 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.2e-67
Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MD+ AKLKKGAG RKGGGPKKKPVSRSVKAGLQFPVGRIGR+LK GRYA+RVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEK---AATKEPKSPSKASKATKSPKKA 154
           NPVLLPKK+EK   AATKEPKSP   +KATKSPKKA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSP---AKATKSPKKA 153

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BLAST of CmaCh13G001570 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.3e-64
Identity = 133/155 (85.81%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MD+S K KKGAGGRKGGGP+KK V+RS++AGLQFPVGRIGRYLK GRYA+RVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAAT--KEPKSPSKASKATKSPKKA 154
           NPVLLPKK+E++ T  KEPKSP    KA KSPKKA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPK--PKAGKSPKKA 153

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BLAST of CmaCh13G001570 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.6e-64
Identity = 135/156 (86.54%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 60
           MDS  K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAA--TKEPKSPSKASKATKSPKKA 154
           INP+LLPKKSEKAA  TK PKSP   SKATKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSP---SKATKSPKKS 153

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BLAST of CmaCh13G001570 vs. ExPASy Swiss-Prot
Match: P25470 (Histone H2A.1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 128/153 (83.66%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MD+S K KKGAGGRKGGGP+KK V+RSV+AGLQFPVGR+GR+LK GRYA+RVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRI PRH+LLA+RNDEELGKLLAGVTIA+GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NPVLLPK+ E AA   PKSPSKA    KSPKKA
Sbjct: 121 NPVLLPKRKENAAASTPKSPSKAK---KSPKKA 150

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BLAST of CmaCh13G001570 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-62
Identity = 133/153 (86.93%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MD+S K KKGAGGRK GGP+KK V+RS +AGLQFPVGRIGRYLK GRYA+RVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRK-GGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NP+LLPKK+EKAAT   KSP   SKATKSPKKA
Sbjct: 121 NPILLPKKNEKAAT-TTKSP---SKATKSPKKA 148

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BLAST of CmaCh13G001570 vs. ExPASy TrEMBL
Match: A0A6J1I2Z0 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111469444 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA
Sbjct: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 153

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BLAST of CmaCh13G001570 vs. ExPASy TrEMBL
Match: A0A6J1HMJ0 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111464937 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA
Sbjct: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 153

[Close]

BLAST of CmaCh13G001570 vs. ExPASy TrEMBL
Match: A0A5D3BQ44 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00860 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.4e-71
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M++  KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NPVLLPKKSEKA TKEPKSPSKA KATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSKAPKATKSPKKA 153

[Close]

BLAST of CmaCh13G001570 vs. ExPASy TrEMBL
Match: A0A0A0LV77 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G481210 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.4e-71
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M++  KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NPVLLPKKSEKA TKEPKSPSKA KATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSKAPKATKSPKKA 153

[Close]

BLAST of CmaCh13G001570 vs. ExPASy TrEMBL
Match: A0A1S3C5R1 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103497210 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.4e-71
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M++  KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NPVLLPKKSEKA TKEPKSPSKA KATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSKAPKATKSPKKA 153

[Close]

BLAST of CmaCh13G001570 vs. NCBI nr
Match: XP_022964993.1 (histone H2A [Cucurbita moschata] >XP_022970475.1 histone H2A [Cucurbita maxima] >XP_023520345.1 histone H2A [Cucurbita pepo subsp. pepo] >KAG6583464.1 hypothetical protein SDJN03_19396, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019222.1 hypothetical protein SDJN02_18180 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA
Sbjct: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 153

[Close]

BLAST of CmaCh13G001570 vs. NCBI nr
Match: XP_004149043.1 (histone H2A [Cucumis sativus] >XP_008457544.1 PREDICTED: histone H2A [Cucumis melo] >KAA0033912.1 Histone core [Cucumis melo var. makuwa] >KGN65668.1 hypothetical protein Csa_019600 [Cucumis sativus] >TYK01294.1 Histone core [Cucumis melo var. makuwa])

HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M++  KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NPVLLPKKSEKA TKEPKSPSKA KATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSKAPKATKSPKKA 153

[Close]

BLAST of CmaCh13G001570 vs. NCBI nr
Match: XP_022134450.1 (histone H2A-like [Momordica charantia])

HSP 1 Score: 275.8 bits (704), Expect = 2.3e-70
Identity = 146/153 (95.42%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M++  KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NPVLLPKKSEKA TKEPKSPSK +KATKSPKKA
Sbjct: 121 NPVLLPKKSEKAVTKEPKSPSKVTKATKSPKKA 153

[Close]

BLAST of CmaCh13G001570 vs. NCBI nr
Match: XP_038895656.1 (histone H2A [Benincasa hispida])

HSP 1 Score: 275.4 bits (703), Expect = 3.0e-70
Identity = 146/153 (95.42%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           M++  KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLK+GRYARRVGTGAPVY+
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKHGRYARRVGTGAPVYM 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NPVLLPKKSEKAA KEPKSPSKASKATKSPKKA
Sbjct: 121 NPVLLPKKSEKAAAKEPKSPSKASKATKSPKKA 153

[Close]

BLAST of CmaCh13G001570 vs. NCBI nr
Match: XP_022949405.1 (histone H2A-like [Cucurbita moschata])

HSP 1 Score: 274.2 bits (700), Expect = 6.6e-70
Identity = 145/153 (94.77%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60
           MD+S+KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY+
Sbjct: 1   MDTSSKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           NPVLLPKKSEKAA+KEPKSPSK  K  KSPKKA
Sbjct: 121 NPVLLPKKSEKAASKEPKSPSKTPKGAKSPKKA 153

[Close]

BLAST of CmaCh13G001570 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 245.0 bits (624), Expect = 4.0e-65
Identity = 135/156 (86.54%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 60
           MDS  K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAA--TKEPKSPSKASKATKSPKKA 154
           INP+LLPKKSEKAA  TK PKSP   SKATKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSP---SKATKSPKKS 153

[Close]

BLAST of CmaCh13G001570 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-61
Identity = 135/180 (75.00%), Postives = 143/180 (79.44%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 60
           MDS  K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 IRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAA--TKEPKSPSKASKATKSPKKA 154
           +RNDEELG LL GVTIAHGGVLPNINP+LLPKKSEKAA  TK PKSP   SKATKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSP---SKATKSPKKS 177

[Close]

BLAST of CmaCh13G001570 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-53
Identity = 116/150 (77.33%), Postives = 129/150 (86.00%), Query Frame = 0


Query: 1   MDSSAKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 60
           M+S+ K+KK  GGRK  G PK K VS+S+KAGLQFPVGRI R+LK GRYA+R+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKS-----EKAATKEP-KSPSKA 144
           IN VLLPKKS     E+ ATK P KSP KA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSPVKSPKKA 150

[Close]

BLAST of CmaCh13G001570 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 200.7 bits (509), Expect = 8.6e-52
Identity = 114/151 (75.50%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 3   SSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAA 62
           ++ K  +GAGGRK GG +KK VS+SVKAGLQFPVGRI RYLK GRYA R G+GAPVYLAA
Sbjct: 6   ATTKPTRGAGGRK-GGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAA 65

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINP 122
           VLEYLAAEVLELAGNAARDNKKNRI PRH+ LAIRNDEELG+LL GVTIA GGVLPNINP
Sbjct: 66  VLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINP 125

Query: 123 VLLPKKSEKAATKEPKSPSKASKATKSPKKA 154
           VLLPKKS  ++++  K     + ATKSPKKA
Sbjct: 126 VLLPKKSTASSSQAEK-----ASATKSPKKA 150

[Close]

BLAST of CmaCh13G001570 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-44
Identity = 91/120 (75.83%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 10  GAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAAVLEYLAA 69
           G G   G G  KK  SRS KAGLQFPVGRI R+LKNG+YA RVG GAPVYLAAVLEYLAA
Sbjct: 3   GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 129
           EVLELAGNAARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

The following BLAST results are available for this feature:

BLAST of CmaCh13G001570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M531	3.2e-67	89.74	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q2HU65	4.3e-64	85.81	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
Q9LZ46	5.6e-64	86.54	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
P25470	1.1e-62	83.66	Histone H2A.1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q2HU68	1.8e-62	86.93	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]

BLAST of CmaCh13G001570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I2Z0	1.1e-73	100.00	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111469444 PE=3 SV=1	[more]
A0A6J1HMJ0	1.1e-73	100.00	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111464937 PE=3 SV=1	[more]
A0A5D3BQ44	6.4e-71	96.08	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00860 PE=...	[more]
A0A0A0LV77	6.4e-71	96.08	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G481210 PE=3 SV=1	[more]
A0A1S3C5R1	6.4e-71	96.08	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103497210 PE=3 SV=1	[more]

BLAST of CmaCh13G001570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964993.1	2.2e-73	100.00	histone H2A [Cucurbita moschata] >XP_022970475.1 histone H2A [Cucurbita maxima] ...	[more]
XP_004149043.1	1.3e-70	96.08	histone H2A [Cucumis sativus] >XP_008457544.1 PREDICTED: histone H2A [Cucumis me...	[more]
XP_022134450.1	2.3e-70	95.42	histone H2A-like [Momordica charantia]	[more]
XP_038895656.1	3.0e-70	95.42	histone H2A [Benincasa hispida]	[more]
XP_022949405.1	6.6e-70	94.77	histone H2A-like [Cucurbita moschata]	[more]

BLAST of CmaCh13G001570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	4.0e-65	86.54	histone H2A 12	[more]
AT5G02560.2	4.6e-61	75.00	histone H2A 12	[more]
AT5G59870.1	2.1e-53	77.33	histone H2A 6	[more]
AT5G27670.1	8.6e-52	75.50	histone H2A 7	[more]
AT3G20670.1	1.7e-44	75.83	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 80..94 score: 73.78 coord: 66..79 score: 89.46 coord: 108..126 score: 75.79 coord: 22..44 score: 69.23 coord: 51..66 score: 86.43
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 11..131 e-value: 8.1E-80 score: 281.2
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 23..128 e-value: 2.7192E-65 score: 192.935
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 100..133 e-value: 7.9E-19 score: 67.1
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 20..97 e-value: 8.4E-12 score: 45.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 10..139 e-value: 1.0E-63 score: 215.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 25..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..153
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 7..145
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 7..145
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 30..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G001570.1	CmaCh13G001570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003723	RNA binding