CmaCh13G001300 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G001300
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr13: 882839 .. 886237 (-)
RNA-Seq ExpressionCmaCh13G001300
SyntenyCmaCh13G001300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGATCCTATAAGAAGAGAAGGAGATGTAGACTCAAAAAACACAGCAAATTCCATTCCATAAAATTTGATTCGAAGTTGAGAAATATTTACAGTGCGAAAGAGAAATGGCTTCTGGCTGCAACTGTGGTGATAACTGCTCCTGTGGAGACAGCTGCAACTGTCAATCCGGGTACAAATTTACTTCTTTTTCGTTTTAGATCGTTAAAAAGCTCGATTAATTTTGCATAGGTCGAGTAGGGTTTGAACAAATAACTCGAATTATCGTTCGTTCGAGCGTAGCTAAGATACCTATTACCATCCTAAATGTCGTTAGTTTGTTTTAAAAGAAATAAACGGTTGATTTTTAAGGAGGATGTTATCACCAACTTTGGAAACAAGTATTGAAAAAACTCGATTAGCTCGATTAAATTTGCATATGTTAGAGCTGAGTTTGAACAAATAACTCGAATTATTGCTAGTTCGAGCATAGCTAAACTCTGACTACCATCCCAAATATCGATGATTTTGACCCTAAACTAAAAAAAAACTTGATTTCTCGGACCAACCAACCAACGAATTTATTCTAAGAGAAATATTCTTTTACCCAATTGGGTAAATGATCGATTTTTAAAGAATATGTTATCACTAACTTTAGAAACACGAATTGAAAAAATTTGATAAGCTACGTCGAGCTGGGTTTAAACAAATAACTCGAGGTTTTAAAACGCATCTACTAAGGAGAAGCTTTCACACTCTAATAAATAATGTTTCCATTGGAGAGAATCTTCGAGTTTTTAGCCCTTTCGTTAAGATTTAGGGAGAATCTTCGAGTCAGTTTAGCCCTTTCGTTAAGATACAGTTTTAAAATTGTTGATGCATAATCTTTATGTGTACGTATATACGATATTTTTCATTAAAACGTGTTCGTAATCTATGCAGAACCATCACAGCCATCATCCTGAAGAAGTAAGTGATAATTTTGAGTAGTTTTCTTTTAGAAACATCATACAAGCATCAAGAAATTGAACTTACAAACATAAACTATGCAGGGGTGGGTGCAGCTGTGGGAGTGGCTGCTCATGTGACCCATGCAACTGCTAAGTGAACAAAATGCCCAAACGACAACAACAAAGCTTCTTATCCATAGAATAAACAGAATTTGGTGTTCTTTGTCTTGTTCTTTTTCTTGAAATGTGTAGTGTGAAGTGAAGTGTGTGATGTTGCTTTGTTGTGGGTGGGCATTTGGGGTTCATATCAGATCATCAAAGTTTCTATGTGTGTTTGAATTTATGTTTTATATCAATATTTGTTTCGTGTCGTAGCATTCGTGTTCTTTTAACTTCCTGTCTCTCGTTTTTTTGTCTCTTAATCCGTTTATGAATTTAGTTTTTGTAGTTTCAAGTTGTGGGACGAGTTAAATTTGTCTTTATTGTTCGTTACTTATTTTTCTATAGAAGGCTTTTAACATTCGTTACCAATTTAAACATAACTCAACTAGATAAAAACATTTACATTCTTGACGAAAATATCAAAAGTTTTTTGAATTCTCGATTATTGGGTTAGGGAATGCAAACACATGCAACATAATGAAACATATCATTTAAAATCGTATTCTCTTATGTGGCCTTTAGTTCGGAGAAGTTGAATGTGTATTACCTTTCTACACACGACTCATATGTGCAAGTATGGACCCCACTAGGAGGGCTCTCACACCCCTTGGGCCTACTAGTCTAGCTAGCTCCTCTAGGCTGTAGTCCAACACCCGAAGGTACAACGACTGTCGTGCACCATGTCAAGCATGTGGGTTATTTCAATCTCGTAGTGTCTGCATCTGTACTCATAATAAATGGGAAGTATTTCGATGCATATAAACATACAATTACGTCGAAGTCCCCATACTTTTCATTATAAATAAATCATCTTTCATTCCTCACAAATTACACTCGTTAATATGCATACATAAATCATTTGAATACATATCATACCATGTCATAACGTGTCATTGCCAAACATATTCATAATACATTGTGGCATCTCATAACATAACATGAATTGACACTCAACGTTATTTTAGCGTATCATAAAGCAATACATATCATTTCATTAGACATTAAATATATCACAAATATGACACGTTCAAGACTACTAGGAATTTTCTTAGAGTAATTTTATGTTTTGTGATATATTACTTATATCAATAAGCTTGTTTTGCTTAGAATAATTTTATGTTTTGTGACGTTCTTAGGAATTTTCCTAAAATACATGTAAATGAAAACAAAACGTGTTAGAAAAGCTCGTGTTTGACCTGGAGAGATGTTAATTCGTTTTTATAATCGATAATAACTAATAATGGAGAGGGTTTCCATCTTATGACTTTGGGAATTATTTAAATTAAAGAAAGAGGTTCATAGGAAATAACGAAGTGTAGGTAGGAACCGTCCACGTGTACGGTGGATAATCACCACCAATTGGGTCCTGAAGAGCTCTATATAAACAGGAAAATTTTGATACTCAAAAACCAGAAAAACAATGGCTTCTGGCTGCAAATGTGGTGATAATTGCTCCTGTGGAGATAGCTGCAATTGCCTCTCTGGGTCTCTCTCTCTCTCTATATATATATATTTTTTTACGTAGAACGAGCGAAATTTTACATTTTAACTTTTTATTATATGCATAGTCGTTCGTTCATATAATTTTAAACGAGCAAATTAAAGAGAAACAAGAATGCGATTGGGTTCGTTGTTTCTTTTTCGCTTCGTGATTCAAATATATAATCATCCTCTTCTTTGTTTTTTATCTTTACAGGACTGTCAAAGAGACCACCTCCCTAATCAACATGTACATAAATAGTTATGCGTTAAATTATGAATGAAAATAGAACGATAGTAATAGAAATTTTTTTGTTTGGTATCGTGTGCAGGAACGACGGGTGCGACTGCTGCGACTGCTGCGACAGCAGCTGCTCGTGTGACGGGTGTGGCTGCTGCTGATGAGCGAGCTAGATGGAGAGGAGATGGATAAAGCCCTTAAACAACAAAGCTTGTGAAATGGAATAAAGTTACCGATCAATATGCAAAGTTCATCTGTTTTTGCTTCCTTTTTTTGTACTTTGTTTGAGTCTATGATGGCTGCTTGAAATCTAGTGTGAAGAATTATATAAGTGCTTTGTTGTGGGCTGTAGGTGCCTTGTTTTATATCAAGATTGAGTTTGAATAACTTGAACTTACGAAGTCAAACCTATATTTAGATCATCGGTTTTGTAGCTCGACGATGAACAATCCCAAGTTATATATACGTCGACGTTGTCCACGAAGTCTAAATTTTTCATAACAGACTTGTTCGCTAGATTAGAACAAGTGCCACAAATTAACATCATTCTAAACGTCACTTTCTTAAAAGTTTAAGCATAAATTTGTT

mRNA sequence

AGAAGATCCTATAAGAAGAGAAGGAGATGTAGACTCAAAAAACACAGCAAATTCCATTCCATAAAATTTGATTCGAAGTTGAGAAATATTTACAGTGCGAAAGAGAAATGGCTTCTGGCTGCAACTGTGGTGATAACTGCTCCTGTGGAGACAGCTGCAACTGTCAATCCGGCCATCATCCTGAAGAAGAAAATTTTGATACTCAAAAACCAGAAAAACAATGGCTTCTGGCTGCAAATGTGGTGATAATTGCTCCTGTGGAGATAGCTGCAATTGCCTCTCTGGGAACGACGGGTGCGACTGCTGCGACTGCTGCGACAGCAGCTGCTCGTGTGACGGGTGTGGCTGCTGCTGATGAGCGAGCTAGATGGAGAGGAGATGGATAAAGCCCTTAAACAACAAAGCTTGTGAAATGGAATAAAGTTACCGATCAATATGCAAAGTTCATCTGTTTTTGCTTCCTTTTTTTGTACTTTGTTTGAGTCTATGATGGCTGCTTGAAATCTAGTGTGAAGAATTATATAAGTGCTTTGTTGTGGGCTGTAGGTGCCTTGTTTTATATCAAGATTGAGTTTGAATAACTTGAACTTACGAAGTCAAACCTATATTTAGATCATCGGTTTTGTAGCTCGACGATGAACAATCCCAAGTTATATATACGTCGACGTTGTCCACGAAGTCTAAATTTTTCATAACAGACTTGTTCGCTAGATTAGAACAAGTGCCACAAATTAACATCATTCTAAACGTCACTTTCTTAAAAGTTTAAGCATAAATTTGTT

Coding sequence (CDS)

ATGGCTTCTGGCTGCAACTGTGGTGATAACTGCTCCTGTGGAGACAGCTGCAACTGTCAATCCGGCCATCATCCTGAAGAAGAAAATTTTGATACTCAAAAACCAGAAAAACAATGGCTTCTGGCTGCAAATGTGGTGATAATTGCTCCTGTGGAGATAGCTGCAATTGCCTCTCTGGGAACGACGGGTGCGACTGCTGCGACTGCTGCGACAGCAGCTGCTCGTGTGACGGGTGTGGCTGCTGCTGATGAGCGAGCTAGATGGAGAGGAGATGGATAA

Protein sequence

MASGCNCGDNCSCGDSCNCQSGHHPEEENFDTQKPEKQWLLAANVVIIAPVEIAAIASLGTTGATAATAATAAARVTGVAAADERARWRGDG
Homology
[Close]
BLAST of CmaCh13G001300 vs. NCBI nr
Match: KAG7019194.1 (hypothetical protein SDJN02_18152 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.2 bits (173), Expect = 5.1e-09
Identity = 49/92 (53.26%), Postives = 53/92 (57.61%), Query Frame = 0 

Query: 1  MASGCNCGDNCSCGDSCNCQSGHHPEEENFDTQKPEKQWLLAANVVIIAPVEIAAIASLG 60
          MASGC CGDNCSCGDSCNC SG         T K                 E  ++ ++ 
Sbjct: 1  MASGCKCGDNCSCGDSCNCLSG---------TVK-----------------ETTSLINMY 60

Query: 61 TTGATAATAATAAARVTGVAAADERARWRGDG 93
                ATAATAAARVTGVAAADERARWRGDG
Sbjct: 61 VNRTMGATAATAAARVTGVAAADERARWRGDG 66

The following BLAST results are available for this feature:
BLAST of CmaCh13G001300 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G001300 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G001300 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019194.15.1e-0953.26hypothetical protein SDJN02_18152 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmaCh13G001300 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G001300.1CmaCh13G001300.1mRNA