CmaCh13G001010 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G001010
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCma_Chr13: 722925 .. 725621 (-)
RNA-Seq ExpressionCmaCh13G001010
SyntenyCmaCh13G001010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGCGGTGGTTTTCCAAGTCGAAGTTACCCATTTGCTATTCGGTATTCCTACGAGGTCTAACGAGGAGACCCATTAGAGATATCCCATTACCAGTAAAATCGACGATTGCTGGATTTCTGCCGGATTCCAGCCGACTCTTAAGCGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATGAAGTGTCATGTTTTGCGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCATTAGCCGTCAAGGTCTCTTTTCCCTTCCTTTTCTTCAATATGTTCCGTCATTTTTTGGGTTTTTAACTTTACTTCATGAGGTGCCATGGAAATAGATAACGAGCTTCTGCAAAATATACTTAATATTCATGTCTTACTCTTGTTTGTTGTCACTATTACTTTTCAATAACCTTGTTGGTTAATGCTTTGAATTTTTGCTTCTTAATTGTTATGTTCATCTCTGATCTGCACCTTTTGATTGCTCATCAGGGTCTTCTTCATATATATATTTATGATTTAAGATCGTATATGAACCCTTTTCCAATCTAGTTGCTTGTGGAAAATATGTTGTGAAATCTCACCCGGTTGGGGAGGAGAATGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCTTAGCAGAAACCTTGAGGAGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCAGTGATGTTGGGTTGGGTTGTTATAAATAATATCAAAGTTGGACATCGGGCAATGTGCCAACAAGGAGGCTGGGACCTAAAGGGGGTGGACATGAGGCGGTGTGCTAGCTAGGACGTTGGGCCCCGAATGGGGGTGGATTGGGAGCTTCACATCGATTGGAGAAGGGAACGAGTGCCAGCGAGGACGCTGGGCCTCGAAGGGTGGTGGATTGTGAGATCCCACATCGGTTGGGGAGAACGAAACATTCTTTATAAGGATGTGGAAACCTCTCCCTAGCTAACGCGTTTTAAAAACCTTGAGGGAAGCTCGAAAGAGAAAGCCCAAAGAGGATAATATCTGCTAGCAGTCGGTTTGGCTATTACATATTTGCTGTTAGATTCTCTTACTTCAACTTGATATTGATCAATTTTACTTCATTATTTCGGGGAATCTGACCTGACCTGCTGCACTTTTCTATTGTCATTATGTTTGCTCGCCTTGAATGCTTGTCGAACTTTCAGGTATTTCGGTTGATTCAAAAGCAAGAATGGTTCAAGCCCGATGTTTTTATCTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTATACCGAAGTCATCAGAGGTTTCTTGAAATATGGATCTCCTTCTGATGCAATGAACATATATGAGGATATGAAGAAGTCTCCTGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTGAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCACGTGTACGATCCCCCAGAAGAGATATTCGGCCTACGCTGAGGTATGTTCTATTAACGTTGCGTTTTTGCTTGTATTATCTGACGGTTGGTAGCACTTAGTAGGCATTCGTAGTCGGCCATTGATGTCATGAAAAAATGACCAAAACATGTCTTCGAATTAGCGGTCAAGAAGTGTAGGATGAATAGTTGGTGAGATATTCGTACGAGTCATGTGGATAATAGTTGAGTTCGAGCCAAGAAATCTATTCGTTGTATGGTTCGCTTAGATCCGTGGGGAAGGGGATCAAGTGAGTCATGTCATCCTCGTAAACAGGAAAATTCATAGACCATTCCCGTCGTCGTTGTCTCCGCTCTGTAGAAGCTACAAATAGTAAGATTTAGGGGTCACGAACCAACGATCAAATCCTGTTCGATAAGTGAAATGCATTGGTTGTCCACACTTTTGTGGGGTCGGTAGGTTCGTTATGAAGAGTACACCATTGTTATTACAAAGCCTTTGAAAGACCTTTAGCCCTTTAACATCAGATGCTTGTTCATGTCAGTTCATTGCTGCTAACTAGTTTAGCCCTTTCTCTTGCGTCGTTACGACTTCATTCTAATCTGATTACATCGTATTACACATCATTTCAGTGAATTAATAGGACGTTTTGTCGGAGAACATTACTCTGGTTTTGTGATGTTTCCTGCTGCTGGAGCTGAAAGCAAAACAAAGCGCGACGATACGAAACTGCAACGAGATGGATATGTTTTCGATGGTGTTTCTGGGGACAGGCGTCTTGGGATTCGAAGGAGAAGGTAAAGAAGATGAAGAAAATACCATATAGCTTGAATCAAATGCAGGTGTTTGTTTCCTAGTAAGAGAGTCTGCAGTTTGTTGAGGGATCATTGTCCAGAATTTGTCTATTTACTGAGGACCCTGAATGCAACATGGAGTTACAAATGTATAACTTTTAAAGCCTTAATTTCAGTACTTATAAGGTTTATTAAATTTTATATTTAGTCACCATGGTAAAAGATTGATGCAT

mRNA sequence

ATGGCAATGCGGTGGTTTTCCAAGTCGAAGTTACCCATTTGCTATTCGGTATTCCTACGAGGTCTAACGAGGAGACCCATTAGAGATATCCCATTACCAGTAAAATCGACGATTGCTGGATTTCTGCCGGATTCCAGCCGACTCTTAAGCGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATGAAGTGTCATGTTTTGCGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCATTAGCCGTCAAGGTATTTCGGTTGATTCAAAAGCAAGAATGGTTCAAGCCCGATGTTTTTATCTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTATACCGAAGTCATCAGAGGTTTCTTGAAATATGGATCTCCTTCTGATGCAATGAACATATATGAGGATATGAAGAAGTCTCCTGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTGAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCACGTGTACGATCCCCCAGAAGAGATATTCGGCCTACGCTGAGTGAATTAATAGGACGTTTTGTCGGAGAACATTACTCTGGTTTTGTGATGTTTCCTGCTGCTGGAGCTGAAAGCAAAACAAAGCGCGACGATACGAAACTGCAACGAGATGGATATGTTTTCGATGGTGTTTCTGGGGACAGGCGTCTTGGGATTCGAAGGAGAAGGTAAAGAAGATGAAGAAAATACCATATAGCTTGAATCAAATGCAGGTGTTTGTTTCCTAGTAAGAGAGTCTGCAGTTTGTTGAGGGATCATTGTCCAGAATTTGTCTATTTACTGAGGACCCTGAATGCAACATGGAGTTACAAATGTATAACTTTTAAAGCCTTAATTTCAGTACTTATAAGGTTTATTAAATTTTATATTTAGTCACCATGGTAAAAGATTGATGCAT

Coding sequence (CDS)

ATGGCAATGCGGTGGTTTTCCAAGTCGAAGTTACCCATTTGCTATTCGGTATTCCTACGAGGTCTAACGAGGAGACCCATTAGAGATATCCCATTACCAGTAAAATCGACGATTGCTGGATTTCTGCCGGATTCCAGCCGACTCTTAAGCGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATGAAGTGTCATGTTTTGCGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCATTAGCCGTCAAGGTATTTCGGTTGATTCAAAAGCAAGAATGGTTCAAGCCCGATGTTTTTATCTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTATACCGAAGTCATCAGAGGTTTCTTGAAATATGGATCTCCTTCTGATGCAATGAACATATATGAGGATATGAAGAAGTCTCCTGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTGAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCACGTGTACGATCCCCCAGAAGAGATATTCGGCCTACGCTGA

Protein sequence

MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEEVALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
Homology
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BLAST of CmaCh13G001010 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.3e-94
Identity = 169/248 (68.15%), Postives = 201/248 (81.05%), Query Frame = 0 

Query: 10  KLPICYSVFLRGLTRRP----IRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRPRGPLW 69
           K P   S+F + +TR P    I    L  K+ +    P    +      +HDGRPRGPLW
Sbjct: 10  KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVF--VSRFHDGRPRGPLW 69

Query: 70  RSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEEVALAV 129
           R +K IGKEALFVI GLKR KED+EKL KF+K HV RLLKLDM+AV+GELERQEE ALA+
Sbjct: 70  RGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAI 129

Query: 130 KVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYTEVIRG 189
           K+F +IQKQEW++PDVF+YKDLIV+LA+SK+MD+AM LWE M+KENLFPDSQTYTEVIRG
Sbjct: 130 KMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRG 189

Query: 190 FLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVY 249
           FL+ G P+DAMN+YEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELFP++H Y
Sbjct: 190 FLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAY 249

Query: 250 DPPEEIFG 254
           DPPEEIFG
Sbjct: 250 DPPEEIFG 255

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BLAST of CmaCh13G001010 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.3e-45
Identity = 81/181 (44.75%), Postives = 130/181 (71.82%), Query Frame = 0 

Query: 71  IGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEEVALAVKVFRL 130
           + KE L   + LKR +    +L +F+  HV RLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFLKYG 190
           ++++ W++PD+F Y+D+++ LAR+KK+D+  ++WE ++KE +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEE 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

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BLAST of CmaCh13G001010 vs. ExPASy Swiss-Prot
Match: Q9FMQ1 (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-09
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 0 

Query: 133 KQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFLKYGSP 192
           K +   P VFIY  LI  L + K+M+DA +L++ M    L P   TY  +I G+ K G+P
Sbjct: 206 KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNP 265

Query: 193 SDAMNIYEDMKKSPDPPDELPFRILLKGL 222
             +  + E MK     P  + F  LLKGL
Sbjct: 266 EKSFKVRERMKADHIEPSLITFNTLLKGL 294

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BLAST of CmaCh13G001010 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-09
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0 

Query: 124 AVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYTEVI 183
           A++VF L+++Q W+KP+V IY  LIV L + K+ + A EL++ M  E    + + YT ++
Sbjct: 133 AIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALV 192

Query: 184 RGFLKYGSPSDAMNIYEDMKKSPD-PPDELPFRILLKGLL 223
             + + G    A  + E MK S +  PD   + IL+K  L
Sbjct: 193 SAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

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BLAST of CmaCh13G001010 vs. ExPASy Swiss-Prot
Match: Q76C99 (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-08
Identity = 26/80 (32.50%), Postives = 44/80 (55.00%), Query Frame = 0 

Query: 139 PDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFLKYGSPSDAMNI 198
           PDV  Y  +I AL +++ MD AME+  +M K  + PD  TY  ++ G+   G P +A+  
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 199 YEDMKKSPDPPDELPFRILL 219
            + M+     PD + + +L+
Sbjct: 289 LKKMRSDGVEPDVVTYSLLM 308

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BLAST of CmaCh13G001010 vs. ExPASy TrEMBL
Match: A0A6J1I496 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469502 PE=4 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 2.8e-143
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0 

Query: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60
           MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of CmaCh13G001010 vs. ExPASy TrEMBL
Match: A0A6J1HLK1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464704 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 5.4e-139
Identity = 246/255 (96.47%), Postives = 251/255 (98.43%), Query Frame = 0 

Query: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60
           MAMRWFSK KLPICYSVFLRGL RRPIRDIPLPVKST+AGF PDSSR LSGFRLYHDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEW+KPDVF+YKDLIVALARSK+MDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of CmaCh13G001010 vs. ExPASy TrEMBL
Match: A0A5A7SRJ7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00030 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.6e-128
Identity = 226/255 (88.63%), Postives = 243/255 (95.29%), Query Frame = 0 

Query: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60
           MA+RWFS+SKLPI   VFLRGLTRRPIRD+PLPV STI GF PDSSR + GFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMK HV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180
           VALAVK+FRLI+KQ+W+KPDV+IYKDLI+ALARSKKMDDAM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL+YGSPSDAMN+YEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]
BLAST of CmaCh13G001010 vs. ExPASy TrEMBL
Match: A0A0A0LVE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.6e-128
Identity = 224/255 (87.84%), Postives = 243/255 (95.29%), Query Frame = 0 

Query: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60
           MA+RWFS+SKLP+  SVFL+GLTRRPIRD+PLPVKSTI  F PDS R + GFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK +KFMK HV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180
           VALAVK+FRLI+KQ+W+KPDV+IYKDLI+ALARSKKMDDAM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL+YGSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]
BLAST of CmaCh13G001010 vs. ExPASy TrEMBL
Match: A0A6J1E045 (pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=3673 GN=LOC111024687 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.6e-128
Identity = 230/255 (90.20%), Postives = 243/255 (95.29%), Query Frame = 0 

Query: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60
           MA+R FS+SKLPI  SVFLRGLTRRPIRDIPLPVKS I GF PDSSR + GFR YHDGRP
Sbjct: 1   MAIRGFSRSKLPIFASVFLRGLTRRPIRDIPLPVKSKITGFQPDSSRPICGFRPYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMK HV RLLKLDMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKSHVSRLLKLDMISVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180
           VALAVK+FRLIQKQ+W+KPDVF+YKDLI+ALA SKKMDDAMELWESMRKE+LFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFMYKDLIIALAGSKKMDDAMELWESMRKEDLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL+YGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRN+VKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQ+VYDPPEEIFGLR
Sbjct: 241 DQNVYDPPEEIFGLR 255

[Close]
BLAST of CmaCh13G001010 vs. NCBI nr
Match: XP_022970562.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022970563.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022970564.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima])

HSP 1 Score: 517.7 bits (1332), Expect = 5.7e-143
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0 

Query: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60
           MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of CmaCh13G001010 vs. NCBI nr
Match: XP_022964699.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964700.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964701.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >KAG7019169.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 503.4 bits (1295), Expect = 1.1e-138
Identity = 246/255 (96.47%), Postives = 251/255 (98.43%), Query Frame = 0 

Query: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60
           MAMRWFSK KLPICYSVFLRGL RRPIRDIPLPVKST+AGF PDSSR LSGFRLYHDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEW+KPDVF+YKDLIVALARSK+MDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of CmaCh13G001010 vs. NCBI nr
Match: XP_023519300.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023519301.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 501.1 bits (1289), Expect = 5.5e-138
Identity = 245/255 (96.08%), Postives = 251/255 (98.43%), Query Frame = 0 

Query: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60
           MAMRWFSKSKLPICYSVFLRGLT RPIRDI LPVKST+AGF PDSS+ LSGFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEW+KPDVF+YKDLIVALARSK+MDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of CmaCh13G001010 vs. NCBI nr
Match: XP_023521051.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522412.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 499.6 bits (1285), Expect = 1.6e-137
Identity = 244/255 (95.69%), Postives = 251/255 (98.43%), Query Frame = 0 

Query: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60
           MAMRWFSKSKLPICYSVFLRGLT RPIRDI LPVKST+AGF PDSS+ LSGFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEW+KPDVF+YKDLIVALARSK+MD+AMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDEAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of CmaCh13G001010 vs. NCBI nr
Match: XP_038895593.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895594.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895595.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida])

HSP 1 Score: 479.2 bits (1232), Expect = 2.3e-131
Identity = 235/255 (92.16%), Postives = 246/255 (96.47%), Query Frame = 0 

Query: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60
           MA+RWFS+SKLPI  SVFLRGLTRRPIRD  LPVKSTI GF PDSSR L GFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFASVFLRGLTRRPIRDSSLPVKSTITGFQPDSSRPLWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HVLRLLKLDMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMISVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180
           VALAVK+FRLIQKQ+W+KPDVFIYKDLI+ALARSKKMDDAM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL+YGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of CmaCh13G001010 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 346.7 bits (888), Expect = 1.6e-95
Identity = 169/248 (68.15%), Postives = 201/248 (81.05%), Query Frame = 0 

Query: 10  KLPICYSVFLRGLTRRP----IRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRPRGPLW 69
           K P   S+F + +TR P    I    L  K+ +    P    +      +HDGRPRGPLW
Sbjct: 10  KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVF--VSRFHDGRPRGPLW 69

Query: 70  RSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEEVALAV 129
           R +K IGKEALFVI GLKR KED+EKL KF+K HV RLLKLDM+AV+GELERQEE ALA+
Sbjct: 70  RGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAI 129

Query: 130 KVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYTEVIRG 189
           K+F +IQKQEW++PDVF+YKDLIV+LA+SK+MD+AM LWE M+KENLFPDSQTYTEVIRG
Sbjct: 130 KMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRG 189

Query: 190 FLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVY 249
           FL+ G P+DAMN+YEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELFP++H Y
Sbjct: 190 FLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAY 249

Query: 250 DPPEEIFG 254
           DPPEEIFG
Sbjct: 250 DPPEEIFG 255

[Close]
BLAST of CmaCh13G001010 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-46
Identity = 81/181 (44.75%), Postives = 130/181 (71.82%), Query Frame = 0 

Query: 71  IGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEEVALAVKVFRL 130
           + KE L   + LKR +    +L +F+  HV RLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFLKYG 190
           ++++ W++PD+F Y+D+++ LAR+KK+D+  ++WE ++KE +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEE 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]
BLAST of CmaCh13G001010 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 79.0 bits (193), Expect = 6.3e-15
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 0 

Query: 61  RGPLWRSRKAIGKEALFVIQGLKR---------------FKEDEEKLQKFMKCHVLRLLK 120
           R PL R R  +  EA+  +Q LKR                      L + +     RLLK
Sbjct: 496 RKPLQRGR-MLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 555

Query: 121 LDMIAVLGELERQEEVALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWE 180
            DM+AVL EL RQ E +LA+KVF  I+K+ W+KP V +Y D+I  +A +  M++   L+ 
Sbjct: 556 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 615

Query: 181 SMRKE-NLFPDSQTYTEVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGL 222
           +M+ E  L  + + +  ++   L +      M+ Y  M+     PD   FR+L+ GL
Sbjct: 616 AMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGL 671

[Close]
BLAST of CmaCh13G001010 vs. TAIR 10
Match: AT5G12100.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-10
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 0 

Query: 133 KQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFLKYGSP 192
           K +   P VFIY  LI  L + K+M+DA +L++ M    L P   TY  +I G+ K G+P
Sbjct: 206 KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNP 265

Query: 193 SDAMNIYEDMKKSPDPPDELPFRILLKGL 222
             +  + E MK     P  + F  LLKGL
Sbjct: 266 EKSFKVRERMKADHIEPSLITFNTLLKGL 294

[Close]
BLAST of CmaCh13G001010 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0 

Query: 124 AVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYTEVI 183
           A++VF L+++Q W+KP+V IY  LIV L + K+ + A EL++ M  E    + + YT ++
Sbjct: 133 AIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALV 192

Query: 184 RGFLKYGSPSDAMNIYEDMKKSPD-PPDELPFRILLKGLL 223
             + + G    A  + E MK S +  PD   + IL+K  L
Sbjct: 193 SAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

The following BLAST results are available for this feature:
BLAST of CmaCh13G001010 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STF92.3e-9468.15Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Q1PFH73.3e-4544.75Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX... [more]
Q9FMQ13.0e-0938.20Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop... [more]
Q9FKC35.0e-0935.00Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... [more]
Q76C992.5e-0832.50Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV... [more]
BLAST of CmaCh13G001010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I4962.8e-143100.00protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1HLK15.4e-13996.47protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 G... [more]
A0A5A7SRJ75.6e-12888.63Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0LVE95.6e-12887.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1[more]
A0A6J1E0455.6e-12890.20pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=... [more]
BLAST of CmaCh13G001010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022970562.15.7e-143100.00protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_02297056... [more]
XP_022964699.11.1e-13896.47protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964... [more]
XP_023519300.15.5e-13896.08protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subs... [more]
XP_023521051.11.6e-13795.69protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >X... [more]
XP_038895593.12.3e-13192.16protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_0388955... [more]
BLAST of CmaCh13G001010 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G46870.11.6e-9568.15Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62350.12.4e-4644.75Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G09320.16.3e-1532.20Vacuolar sorting protein 9 (VPS9) domain [more]
AT5G12100.12.1e-1038.20pentatricopeptide (PPR) repeat-containing protein [more]
AT5G48730.13.6e-1035.00Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 139..187
e-value: 1.2E-10
score: 41.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 178..205
e-value: 1.3E-4
score: 19.9
coord: 144..175
e-value: 5.5E-6
score: 24.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 140..174
score: 11.268274
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 175..209
score: 10.522905
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 69..255
e-value: 1.3E-55
score: 189.6
IPR044795Pentatricopeptide repeat-containing protein THA8L-likePANTHERPTHR46870PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTICcoord: 4..254
NoneNo IPR availablePANTHERPTHR46870:SF2PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTICcoord: 4..254

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G001010.1CmaCh13G001010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding