CmaCh13G000930 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G000930
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerases I and III subunit RPAC2-like
Location	Cma_Chr13: 691059 .. 692410 (-)
RNA-Seq Expression	CmaCh13G000930
Synteny	CmaCh13G000930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAAACTAGACGTGGTAGTGTATCTCTAAATTCAAATCCTTACCGTGTAAGAGAGTTGTACTCAATTCACCCCACAAGTGCAATTGATAGGAAGGTATGCAATGCAACGAGTAATCATACATTTGTTGCTCAATAGTACGCTCTAAAGGCTATTTACTTGGAGCTTAACACTTCAATGGCTTCTCCTAGTAGTCCATGCCTCTTTTAGGAGTAACATCCAGACAGGTAAAGTTTGTAAGGGTAGTAATATAGTCGGGAAGAAATAACTAATCAAAAGCTTCTTCTTCAAGCTAAAAACAACTGTGGCTCTTGGCCCAGATAACGTTCTAGGCATAGGGGAGATCGGAGTAATAGTGAACGCCTAGACGACGTTTTTCTCTAGGGGTCCTTCCACCCCTTGCCCCCGAATAAGGGTACAAATGGTTTTGTATACTTTTAAATGACTTGTTACATCATCTCGTTGTCTAAGAGTGACATTTTGTGGGTACAACATCTCTCATCCTTCAGATGATCGAGTTAATATTAGAGTCCAGACAACATGTAACATTTTGAAGTAGTATAACTCTCTAAAGTGCAAGAGATCGGTTCCCATTTTTAGTGTTTCCAATAATTAGACTTGTTCTTGCCTGGTTTTCTTCTTTATACACATCCAATTTATGCATTCATGAGAAATATAGTCTATGGCTCTATGCTAAATGTGATCCTTTTCCGAAGAACACAAGTTGGATCCTTGTAGCTTTGCTAGAACCCCATCCATTTTGGTACTTGATTTATGGATCGTTACTATTTAGTTTCATAAATTAAAAGAAGATTTATAAGGTGGCTATCTTGTTCTTAAACAAGATTTATAAGGTGGCTATCTTGTTCTTACTATGGATGCTAGCATCTCAATATTGATGTGACGTGCGTACTAGATAAACATTAGTTGATTTGACGATAGAAAAATAGTTGGAAGTGACCAAGCATTAGCATTAGAGATACTGATGAGAAGGGTTTTGATGGAACATGACAGGTGATCCTGCAAGAGAGGTTCTGAAAGATGCGTGTCAGAACTTCATGGTGGTCTGCCACCATGTGAGGAACACATTCGACAAGGCTGTGCTTGATTTCAAACCCACCAATCCTGTGGGAAACATTAATATCAATTAGAATGGTACCCTTTCAGCTTGTCACTTTCTTTCTTAGTCTCGTCTATACTGCAGTTTATAGGTGATTGAGTTGGTTAGCTAACTATGAGATTTCATATCGGTTTGAAAGGGGAATAAACCATTCTTTATAAGAGCGTGAAAATTTCTTCCTAGTAAATACGTTTTAAAACCGTGAGGTTGAAGGCGATATGTAACCGGC

mRNA sequence

ATGACAGAAACTAGACGTGGTAGTGTATCTCTAAATTCAAATCCTTACCGTGTAAGAGAGTTGTACTCAATTCACCCCACAAGTGCAATTGATAGGAAGGTATGCAATGCAACGAGTGATCCTGCAAGAGAGGTTCTGAAAGATGCGTGTCAGAACTTCATGGTGGTCTGCCACCATGTGAGGAACACATTCGACAAGGCTGTGCTTGATTTCAAACCCACCAATCCTGTGGGAAACATTAATATCAATTAGAATGGTACCCTTTCAGCTTGTCACTTTCTTTCTTAGTCTCGTCTATACTGCAGTTTATAGGTGATTGAGTTGGTTAGCTAACTATGAGATTTCATATCGGTTTGAAAGGGGAATAAACCATTCTTTATAAGAGCGTGAAAATTTCTTCCTAGTAAATACGTTTTAAAACCGTGAGGTTGAAGGCGATATGTAACCGGC

Coding sequence (CDS)

ATGACAGAAACTAGACGTGGTAGTGTATCTCTAAATTCAAATCCTTACCGTGTAAGAGAGTTGTACTCAATTCACCCCACAAGTGCAATTGATAGGAAGGTATGCAATGCAACGAGTGATCCTGCAAGAGAGGTTCTGAAAGATGCGTGTCAGAACTTCATGGTGGTCTGCCACCATGTGAGGAACACATTCGACAAGGCTGTGCTTGATTTCAAACCCACCAATCCTGTGGGAAACATTAATATCAATTAG

Protein sequence

MTETRRGSVSLNSNPYRVRELYSIHPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAVLDFKPTNPVGNININ

Homology

[Close]

BLAST of CmaCh13G000930 vs. ExPASy TrEMBL
Match: A0A6J1HYX9 (DNA-directed RNA polymerases I and III subunit RPAC2-like OS=Cucurbita maxima OX=3661 GN=LOC111469385 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.5e-18
Identity = 47/59 (79.66%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 25  HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAVLDFKPTNPVGNININ 84
           HP+          T DPAREVLKDACQNFMVVCHHVRNTFDKAVLDFKPTNPVGNININ
Sbjct: 42  HPSDDRVNIRVQTTCDPAREVLKDACQNFMVVCHHVRNTFDKAVLDFKPTNPVGNININ 100

[Close]

BLAST of CmaCh13G000930 vs. ExPASy TrEMBL
Match: A0A0A0LUT5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.3e-13
Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 10  SLNSNPYRVRELYSI-HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAV 69
           +LN +P      YSI HP+          T DPAREVLKDACQN MVVC HVRNTFDKAV
Sbjct: 30  TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAV 89

Query: 70  LDFKPTNPVGNINI 83
           LD K TNPV +INI
Sbjct: 90  LDVKLTNPVRDINI 103

[Close]

BLAST of CmaCh13G000930 vs. ExPASy TrEMBL
Match: A0A6J1D9Q8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3673 GN=LOC111018936 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 10  SLNSNPYRVRELYSI-HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAV 69
           +LN +P      YSI HP+          T D AREVLKD+CQN MVVC HVRNTFDK+V
Sbjct: 30  TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDSAREVLKDSCQNLMVVCQHVRNTFDKSV 89

Query: 70  LDFKPTNPVGNINI 83
           LDFK T PVG+INI
Sbjct: 90  LDFKLTKPVGDINI 103

[Close]

BLAST of CmaCh13G000930 vs. ExPASy TrEMBL
Match: A0A6J1KDK3 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita maxima OX=3661 GN=LOC111493371 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12
Identity = 44/74 (59.46%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 10  SLNSNPYRVRELYSI-HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAV 69
           +LN +P      YSI HP+          T DPAREVLKDACQN M VC HVRNT DKAV
Sbjct: 30  TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMAVCQHVRNTLDKAV 89

Query: 70  LDFKPTNPVGNINI 83
           LD K T PVG+INI
Sbjct: 90  LDHKLTKPVGDINI 103

[Close]

BLAST of CmaCh13G000930 vs. ExPASy TrEMBL
Match: A0A6J1G901 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita moschata OX=3662 GN=LOC111452057 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12
Identity = 44/74 (59.46%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 10  SLNSNPYRVRELYSI-HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAV 69
           +LN +P      YSI HP+          T DPAREVLKDACQN M VC HVRNT DKAV
Sbjct: 30  TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMAVCQHVRNTLDKAV 89

Query: 70  LDFKPTNPVGNINI 83
           LD K T PVG+INI
Sbjct: 90  LDHKLTKPVGDINI 103

[Close]

BLAST of CmaCh13G000930 vs. NCBI nr
Match: XP_022970382.1 (DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita maxima])

HSP 1 Score: 100.1 bits (248), Expect = 9.3e-18
Identity = 47/59 (79.66%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 25  HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAVLDFKPTNPVGNININ 84
           HP+          T DPAREVLKDACQNFMVVCHHVRNTFDKAVLDFKPTNPVGNININ
Sbjct: 42  HPSDDRVNIRVQTTCDPAREVLKDACQNFMVVCHHVRNTFDKAVLDFKPTNPVGNININ 100

[Close]

BLAST of CmaCh13G000930 vs. NCBI nr
Match: XP_038893936.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 3.1e-13
Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 10  SLNSNPYRVRELYSI-HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAV 69
           +LN +P      YSI HP+          T DPAREVLKDACQN MVVC HVRNTFDKAV
Sbjct: 30  TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAV 89

Query: 70  LDFKPTNPVGNINI 83
           LD K T PVG+INI
Sbjct: 90  LDIKLTKPVGDINI 103

[Close]

BLAST of CmaCh13G000930 vs. NCBI nr
Match: XP_004147276.2 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_011653666.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 6.9e-13
Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 10  SLNSNPYRVRELYSI-HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAV 69
           +LN +P      YSI HP+          T DPAREVLKDACQN MVVC HVRNTFDKAV
Sbjct: 30  TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAV 89

Query: 70  LDFKPTNPVGNINI 83
           LD K TNPV +INI
Sbjct: 90  LDVKLTNPVRDINI 103

[Close]

BLAST of CmaCh13G000930 vs. NCBI nr
Match: KAE8652742.1 (hypothetical protein Csa_014245 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 6.9e-13
Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 10  SLNSNPYRVRELYSI-HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAV 69
           +LN +P      YSI HP+          T DPAREVLKDACQN MVVC HVRNTFDKAV
Sbjct: 126 TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAV 185

Query: 70  LDFKPTNPVGNINI 83
           LD K TNPV +INI
Sbjct: 186 LDVKLTNPVRDINI 199

[Close]

BLAST of CmaCh13G000930 vs. NCBI nr
Match: XP_022150895.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12
Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 10  SLNSNPYRVRELYSI-HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAV 69
           +LN +P      YSI HP+          T D AREVLKD+CQN MVVC HVRNTFDK+V
Sbjct: 30  TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDSAREVLKDSCQNLMVVCQHVRNTFDKSV 89

Query: 70  LDFKPTNPVGNINI 83
           LDFK T PVG+INI
Sbjct: 90  LDFKLTKPVGDINI 103

[Close]

BLAST of CmaCh13G000930 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-08
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 11 LNSNPYRVRELYSI-HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAVL 70
          LN +P      Y+I HP+          T DPAREV KDACQ  M +  HVR+ FDKAV 
Sbjct: 31 LNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVA 90

Query: 71 DFK 73
          ++K
Sbjct: 91 EYK 93

[Close]

BLAST of CmaCh13G000930 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-08
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 11 LNSNPYRVRELYSI-HPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAVL 70
          LN +P      Y+I HP+          T DPAREV KDACQ  M +  HVR+ FDKAV 
Sbjct: 31 LNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVA 90

Query: 71 DFK 73
          ++K
Sbjct: 91 EYK 93

[Close]

BLAST of CmaCh13G000930 vs. TAIR 10
Match: AT2G29540.3 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 51.2 bits (121), Expect = 4.6e-07
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 38  TSDPAREVLKDACQNFMVVCHHVRNTFDKAVLDFK 73
           T DPAREV KDACQ  M +  HVR+ FDKAV ++K
Sbjct: 76  TGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 110

The following BLAST results are available for this feature:

BLAST of CmaCh13G000930 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G000930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYX9	4.5e-18	79.66	DNA-directed RNA polymerases I and III subunit RPAC2-like OS=Cucurbita maxima OX...	[more]
A0A0A0LUT5	3.3e-13	62.16	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010...	[more]
A0A6J1D9Q8	1.3e-12	59.46	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3...	[more]
A0A6J1KDK3	2.8e-12	59.46	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1G901	2.8e-12	59.46	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita moschata OX=36...	[more]

BLAST of CmaCh13G000930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970382.1	9.3e-18	79.66	DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita maxima]	[more]
XP_038893936.1	3.1e-13	62.16	DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]	[more]
XP_004147276.2	6.9e-13	62.16	DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_01165...	[more]
KAE8652742.1	6.9e-13	62.16	hypothetical protein Csa_014245 [Cucumis sativus]	[more]
XP_022150895.1	2.6e-12	59.46	DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia]	[more]

BLAST of CmaCh13G000930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29540.1	4.2e-08	46.03	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	4.2e-08	46.03	RNApolymerase 14 kDa subunit	[more]
AT2G29540.3	4.6e-07	62.86	RNApolymerase 14 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13946:SF37	SUBFAMILY NOT NAMED	coord: 10..82
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 10..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G000930.1	CmaCh13G000930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0055029	nuclear DNA-directed RNA polymerase complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity