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CmaCh13G000930 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAGAAACTAGACGTGGTAGTGTATCTCTAAATTCAAATCCTTACCGTGTAAGAGAGTTGTACTCAATTCACCCCACAAGTGCAATTGATAGGAAGGTATGCAATGCAACGAGTAATCATACATTTGTTGCTCAATAGTACGCTCTAAAGGCTATTTACTTGGAGCTTAACACTTCAATGGCTTCTCCTAGTAGTCCATGCCTCTTTTAGGAGTAACATCCAGACAGGTAAAGTTTGTAAGGGTAGTAATATAGTCGGGAAGAAATAACTAATCAAAAGCTTCTTCTTCAAGCTAAAAACAACTGTGGCTCTTGGCCCAGATAACGTTCTAGGCATAGGGGAGATCGGAGTAATAGTGAACGCCTAGACGACGTTTTTCTCTAGGGGTCCTTCCACCCCTTGCCCCCGAATAAGGGTACAAATGGTTTTGTATACTTTTAAATGACTTGTTACATCATCTCGTTGTCTAAGAGTGACATTTTGTGGGTACAACATCTCTCATCCTTCAGATGATCGAGTTAATATTAGAGTCCAGACAACATGTAACATTTTGAAGTAGTATAACTCTCTAAAGTGCAAGAGATCGGTTCCCATTTTTAGTGTTTCCAATAATTAGACTTGTTCTTGCCTGGTTTTCTTCTTTATACACATCCAATTTATGCATTCATGAGAAATATAGTCTATGGCTCTATGCTAAATGTGATCCTTTTCCGAAGAACACAAGTTGGATCCTTGTAGCTTTGCTAGAACCCCATCCATTTTGGTACTTGATTTATGGATCGTTACTATTTAGTTTCATAAATTAAAAGAAGATTTATAAGGTGGCTATCTTGTTCTTAAACAAGATTTATAAGGTGGCTATCTTGTTCTTACTATGGATGCTAGCATCTCAATATTGATGTGACGTGCGTACTAGATAAACATTAGTTGATTTGACGATAGAAAAATAGTTGGAAGTGACCAAGCATTAGCATTAGAGATACTGATGAGAAGGGTTTTGATGGAACATGACAGGTGATCCTGCAAGAGAGGTTCTGAAAGATGCGTGTCAGAACTTCATGGTGGTCTGCCACCATGTGAGGAACACATTCGACAAGGCTGTGCTTGATTTCAAACCCACCAATCCTGTGGGAAACATTAATATCAATTAGAATGGTACCCTTTCAGCTTGTCACTTTCTTTCTTAGTCTCGTCTATACTGCAGTTTATAGGTGATTGAGTTGGTTAGCTAACTATGAGATTTCATATCGGTTTGAAAGGGGAATAAACCATTCTTTATAAGAGCGTGAAAATTTCTTCCTAGTAAATACGTTTTAAAACCGTGAGGTTGAAGGCGATATGTAACCGGC ATGACAGAAACTAGACGTGGTAGTGTATCTCTAAATTCAAATCCTTACCGTGTAAGAGAGTTGTACTCAATTCACCCCACAAGTGCAATTGATAGGAAGGTATGCAATGCAACGAGTGATCCTGCAAGAGAGGTTCTGAAAGATGCGTGTCAGAACTTCATGGTGGTCTGCCACCATGTGAGGAACACATTCGACAAGGCTGTGCTTGATTTCAAACCCACCAATCCTGTGGGAAACATTAATATCAATTAGAATGGTACCCTTTCAGCTTGTCACTTTCTTTCTTAGTCTCGTCTATACTGCAGTTTATAGGTGATTGAGTTGGTTAGCTAACTATGAGATTTCATATCGGTTTGAAAGGGGAATAAACCATTCTTTATAAGAGCGTGAAAATTTCTTCCTAGTAAATACGTTTTAAAACCGTGAGGTTGAAGGCGATATGTAACCGGC ATGACAGAAACTAGACGTGGTAGTGTATCTCTAAATTCAAATCCTTACCGTGTAAGAGAGTTGTACTCAATTCACCCCACAAGTGCAATTGATAGGAAGGTATGCAATGCAACGAGTGATCCTGCAAGAGAGGTTCTGAAAGATGCGTGTCAGAACTTCATGGTGGTCTGCCACCATGTGAGGAACACATTCGACAAGGCTGTGCTTGATTTCAAACCCACCAATCCTGTGGGAAACATTAATATCAATTAG MTETRRGSVSLNSNPYRVRELYSIHPTSAIDRKVCNATSDPAREVLKDACQNFMVVCHHVRNTFDKAVLDFKPTNPVGNININ Homology
BLAST of CmaCh13G000930 vs. ExPASy TrEMBL
Match: A0A6J1HYX9 (DNA-directed RNA polymerases I and III subunit RPAC2-like OS=Cucurbita maxima OX=3661 GN=LOC111469385 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 4.5e-18 Identity = 47/59 (79.66%), Postives = 48/59 (81.36%), Query Frame = 0
BLAST of CmaCh13G000930 vs. ExPASy TrEMBL
Match: A0A0A0LUT5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010 PE=3 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 3.3e-13 Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 0
BLAST of CmaCh13G000930 vs. ExPASy TrEMBL
Match: A0A6J1D9Q8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3673 GN=LOC111018936 PE=3 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12 Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 0
BLAST of CmaCh13G000930 vs. ExPASy TrEMBL
Match: A0A6J1KDK3 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita maxima OX=3661 GN=LOC111493371 PE=3 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12 Identity = 44/74 (59.46%), Postives = 48/74 (64.86%), Query Frame = 0
BLAST of CmaCh13G000930 vs. ExPASy TrEMBL
Match: A0A6J1G901 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita moschata OX=3662 GN=LOC111452057 PE=3 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12 Identity = 44/74 (59.46%), Postives = 48/74 (64.86%), Query Frame = 0
BLAST of CmaCh13G000930 vs. NCBI nr
Match: XP_022970382.1 (DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita maxima]) HSP 1 Score: 100.1 bits (248), Expect = 9.3e-18 Identity = 47/59 (79.66%), Postives = 48/59 (81.36%), Query Frame = 0
BLAST of CmaCh13G000930 vs. NCBI nr
Match: XP_038893936.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]) HSP 1 Score: 85.1 bits (209), Expect = 3.1e-13 Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 0
BLAST of CmaCh13G000930 vs. NCBI nr
Match: XP_004147276.2 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_011653666.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus]) HSP 1 Score: 84.0 bits (206), Expect = 6.9e-13 Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 0
BLAST of CmaCh13G000930 vs. NCBI nr
Match: KAE8652742.1 (hypothetical protein Csa_014245 [Cucumis sativus]) HSP 1 Score: 84.0 bits (206), Expect = 6.9e-13 Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 0
BLAST of CmaCh13G000930 vs. NCBI nr
Match: XP_022150895.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia]) HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12 Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 0
BLAST of CmaCh13G000930 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit ) HSP 1 Score: 54.7 bits (130), Expect = 4.2e-08 Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0
BLAST of CmaCh13G000930 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit ) HSP 1 Score: 54.7 bits (130), Expect = 4.2e-08 Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0
BLAST of CmaCh13G000930 vs. TAIR 10
Match: AT2G29540.3 (RNApolymerase 14 kDa subunit ) HSP 1 Score: 51.2 bits (121), Expect = 4.6e-07 Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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