CmaCh13G000680 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G000680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	nudC domain-containing protein 2-like
Location	Cma_Chr13: 548842 .. 551323 (-)
RNA-Seq Expression	CmaCh13G000680
Synteny	CmaCh13G000680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTTCGCTAGACCGGAACTTCTCGTTGGAGAAAAAGGAAGGCACAGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAACCCTAAGAAATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTTTTCTCTCTACTCTTATCAATTGGATCTTCTGAATTTTCAATTTGAACGAATGAATTCAATGTTGTATGAGTCTTTTGATCTCTGTGCTCGCTTGGTCGTGGTTTTTCAGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGGTATCGTTGCATCTTTAAGGATTTAATTTTGAAATTTTGATCTATTGCTTCGTTTATGATCGTACCAATTGCTTTCAATCATTGATTTGCAGCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGGTGATTGCAAATTCTCACTTTAATGACTAAATGGAGTCTTGGTTGTTATACTTTTACACCAAACAAATTTCATGGGACTGAGTTTTGGTGTCTCTTTTTTATCTTCCCCTTTTAATTGCTCCACTTTTGTCTATTTTGTAATGTAATTGTTTGGTTATTTTGGGTGGCAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTCGAGCAGAAGCGCCTTATGCTCCAAAGGTTTCAAGAGGAGGTCTGTTCTTTTTTTTACTCTAGACTTTTGATGTATTCTAGATAATATGCTTATGCTTTTGTGTTTTCCATGTTTGTTTTGATTTATGTACTTTTTGTTTCCCTTCTTGAGCATGTTTAGCGTTTTTATTCGAAGATCGATTGTTTCAATTATCCAAATAGATTTTTCATCCTACGAGGCTAGGTTTTAGTTGTTGGTGCTCATGGTTAGGAGGTTTATTTTAATGAGTAAATAGTTAGTGAGATGTTCTGATAACTTCTCGATGTTGATTTCTGGGACGAAGCTAATGTGCCTTGTCATAACTATGAGACAGATGGAGAGGCTAACCTGTCTGGAAAATCATATTCACGTTGTTGGCCTGATAAGAAGAATAGGAAAGCTTTCCATAAAATGTTAATGATTTGATAGTTTTGCAGTATAGGCTTGGTGGACTGAGTTGCTGTGTGTGAGCTGCAGTTCCAGAGGTCGTTAACAATGTAGCACAACTTATGAGAATCCCTGCGTCCTCCTCCTCCTATCCTTCAGAAAAACTTCTTCTCTGAACTCAAACATGAGATCTCCAACTTTTATCTTAAATAATGTAGAGTAGCTGAAACATTCTTCCAAAGTTTGCTTCCGATAAGAGAGGGCCTGGTCTAATCTATACATCACTAAGGTCCATTGAGAGCATACTCTGCAAGTGTTCTTTTGTTTTTTTTTTTTCTTTTTTTAAAGCCCATATCATTTGAGACATCTCTAAAAACTTATTCAGGGGCACTGCACCCAACTATTGTGAGAAAAAACTCCCAACTCAATAGACTAACTTTATGTTCGAGTGATACATTATCTGCTTTCCTTTAGATAGAGGTCTTCCTTCAAGGCACTCACGGGATGACTTGAACCTTTGGCGTGCTCTTGTACCAACTGATGTAGGATAGATGACCTGGTTTTTCCACTGTAGAAGCTGATATGAGAGAGGTCAATTATGTCTTTACCTCATCCACGACCCAGCTCAAGAGTTCACCCTGTAAGGCTACTCCATTTTGAGCCTATCTTTGGAGACAACCTATAGAACCCAATGGAGTGGAAAGAAAGGCTCCCATAACTCTATCCTGAGTTTAAGGGATGGTTTGCATCACTCGTATTTTTAAGCTTTTAGTTTTATTTTGGATGGAATAGGAATAACTATTGGGTTGCATTCAACCTTTGCATATGACGTTTCTTGTCTGATTCTGGTTTAGTAACTACAAACGTTGTCTACTCTGAATATCAAGTCTACACACATGGTGAAAGGTAGTTCATTAATTATGGATGAGAGAGTTGTTGGGTTATTGTTAATTACTAAAATTTTATTAGGTGCTGGTTTTATATATCCCCAATTGGCAGTGTTGTTATGTCTTTGTATGGCCTGCTATTGTAAAGTTATGATATCTTATAAAGACACAAACACATTTCTTTTTCTACAAGATGTCAGAAGTCCTGAATCAAGTGTCAGTTATGTTATGAAATGTTGAAACTTAATCTGCATTACTTATTTCTCTGCAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGA

mRNA sequence

AGCTTCGCTAGACCGGAACTTCTCGTTGGAGAAAAAGGAAGGCACAGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAACCCTAAGAAATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTCGAGCAGAAGCGCCTTATGCTCCAAAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGA

Coding sequence (CDS)

ATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTCGAGCAGAAGCGCCTTATGCTCCAAAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGA

Protein sequence

MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG

Homology

[Close]

BLAST of CmaCh13G000680 vs. ExPASy Swiss-Prot
Match: Q8WVJ2 (NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-20
Identity = 55/140 (39.29%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSV-GGREILKG 65

Query: 68  HLTCPVKTDSSFWTLEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLML 127
            L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]

BLAST of CmaCh13G000680 vs. ExPASy Swiss-Prot
Match: Q9CQ48 (NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-20
Identity = 55/140 (39.29%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAV-GGREILKG 65

Query: 68  HLTCPVKTDSSFWTLEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLML 127
            L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]

BLAST of CmaCh13G000680 vs. ExPASy Swiss-Prot
Match: Q5M823 (NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.1e-20
Identity = 52/126 (41.27%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 22  EWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFWT 81
           +W QTLEEV I + +PP   ++   C +QS HV + + G    L   L      D   WT
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAV-GGREILKGKLFDSTIADEGTWT 79

Query: 82  LEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQ 141
           LED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+RFQ+ENPGFDFS 
Sbjct: 80  LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSG 139

Query: 142 AQFSGN 145
           A+ SGN
Sbjct: 140 AEISGN 144

[Close]

BLAST of CmaCh13G000680 vs. ExPASy Swiss-Prot
Match: Q9STN7 (Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-13
Identity = 45/158 (28.48%), Postives = 74/158 (46.84%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFW 80
           + W Q L+EV I I +P    S+   C+I+   ++VG+KG    ++      VK D  FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYT---------- 140
            +ED  ++ + L K+D+ + W   ++G+               G LDP T          
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255

Query: 141 ----------TDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                     +D  +K+ ML++F  +NPG DFS A+F+
Sbjct: 256 QRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKFN 293

[Close]

BLAST of CmaCh13G000680 vs. ExPASy Swiss-Prot
Match: Q9Y266 (Nuclear migration protein nudC OS=Homo sapiens OX=9606 GN=NUDC PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 39/160 (24.38%), Postives = 73/160 (45.62%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPN--VHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSS 80
           + W QTL E+++ +    N  +  K     IQ  H+ VG+KG P  ++  L   VK + S
Sbjct: 172 YRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEES 231

Query: 81  FWTLED-DIMHITLQKRDKGQTWASPI--------------------------------- 140
            W +ED  ++ + L+K +K + W+  +                                 
Sbjct: 232 SWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMM 291

Query: 141 --QGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQAQFS 143
             Q Q  +   T+D ++K+ +L++F +++P  DFS+A+F+
Sbjct: 292 YDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 331

[Close]

BLAST of CmaCh13G000680 vs. ExPASy TrEMBL
Match: A0A6J1I2V0 (nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111469416 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.3e-90
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 159
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 158

[Close]

BLAST of CmaCh13G000680 vs. ExPASy TrEMBL
Match: A0A6J1HPE6 (nudC domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111464843 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.3e-90
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 159
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 158

[Close]

BLAST of CmaCh13G000680 vs. ExPASy TrEMBL
Match: A0A5A7SMF6 (NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00610 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 9.6e-86
Identity = 150/156 (96.15%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CmaCh13G000680 vs. ExPASy TrEMBL
Match: A0A1S3C618 (nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 9.6e-86
Identity = 150/156 (96.15%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CmaCh13G000680 vs. ExPASy TrEMBL
Match: A0A0A0LV57 (CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.2e-85
Identity = 148/156 (94.87%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CmaCh13G000680 vs. NCBI nr
Match: XP_022964859.1 (nudC domain-containing protein 2-like [Cucurbita moschata] >XP_022970435.1 nudC domain-containing protein 2-like [Cucurbita maxima] >XP_023518977.1 nudC domain-containing protein 2-like [Cucurbita pepo subsp. pepo] >KAG6583365.1 NudC domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342.0 bits (876), Expect = 2.7e-90
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 159
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 158

[Close]

BLAST of CmaCh13G000680 vs. NCBI nr
Match: XP_038894388.1 (nudC domain-containing protein 2 [Benincasa hispida])

HSP 1 Score: 331.3 bits (848), Expect = 4.7e-87
Identity = 152/158 (96.20%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLE+VNIYINLPPNVHSKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEDVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPP+LNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY+TDLEQK
Sbjct: 61  NPPFLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 159
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIRLG
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIRLG 158

[Close]

BLAST of CmaCh13G000680 vs. NCBI nr
Match: XP_008457374.1 (PREDICTED: nudC domain-containing protein 2 [Cucumis melo] >KAA0031818.1 nudC domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 325.9 bits (834), Expect = 2.0e-85
Identity = 150/156 (96.15%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CmaCh13G000680 vs. NCBI nr
Match: XP_004151457.1 (nudC domain-containing protein 2 [Cucumis sativus] >KGN65805.1 hypothetical protein Csa_023350 [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-84
Identity = 148/156 (94.87%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CmaCh13G000680 vs. NCBI nr
Match: XP_019418021.1 (PREDICTED: nudC domain-containing protein 2 [Lupinus angustifolius])

HSP 1 Score: 322.0 bits (824), Expect = 2.8e-84
Identity = 147/156 (94.23%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTL+EVN+YINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLDEVNMYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIVGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CmaCh13G000680 vs. TAIR 10
Match: AT5G58740.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 307.4 bits (786), Expect = 6.8e-84
Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH F+HNGQKVFEWDQTLEEVN+YI LPPNVH K F+CKIQS H+EVGIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH L+ PVKTD SFWTLEDDIMHITLQKR+KGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 156

[Close]

BLAST of CmaCh13G000680 vs. TAIR 10
Match: AT4G27890.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14
Identity = 45/158 (28.48%), Postives = 74/158 (46.84%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFW 80
           + W Q L+EV I I +P    S+   C+I+   ++VG+KG    ++      VK D  FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYT---------- 140
            +ED  ++ + L K+D+ + W   ++G+               G LDP T          
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255

Query: 141 ----------TDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                     +D  +K+ ML++F  +NPG DFS A+F+
Sbjct: 256 QRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKFN 293

The following BLAST results are available for this feature:

BLAST of CmaCh13G000680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WVJ2	2.3e-20	39.29	NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1	[more]
Q9CQ48	2.3e-20	39.29	NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1	[more]
Q5M823	5.1e-20	41.27	NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV...	[more]
Q9STN7	2.7e-13	28.48	Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1	[more]
Q9Y266	2.0e-08	24.38	Nuclear migration protein nudC OS=Homo sapiens OX=9606 GN=NUDC PE=1 SV=1	[more]

BLAST of CmaCh13G000680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I2V0	1.3e-90	100.00	nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC11146941...	[more]
A0A6J1HPE6	1.3e-90	100.00	nudC domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111464...	[more]
A0A5A7SMF6	9.6e-86	96.15	NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3C618	9.6e-86	96.15	nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV...	[more]
A0A0A0LV57	6.2e-85	94.87	CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=...	[more]

BLAST of CmaCh13G000680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964859.1	2.7e-90	100.00	nudC domain-containing protein 2-like [Cucurbita moschata] >XP_022970435.1 nudC ...	[more]
XP_038894388.1	4.7e-87	96.20	nudC domain-containing protein 2 [Benincasa hispida]	[more]
XP_008457374.1	2.0e-85	96.15	PREDICTED: nudC domain-containing protein 2 [Cucumis melo] >KAA0031818.1 nudC do...	[more]
XP_004151457.1	1.3e-84	94.87	nudC domain-containing protein 2 [Cucumis sativus] >KGN65805.1 hypothetical prot...	[more]
XP_019418021.1	2.8e-84	94.23	PREDICTED: nudC domain-containing protein 2 [Lupinus angustifolius]	[more]

BLAST of CmaCh13G000680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58740.1	6.8e-84	89.74	HSP20-like chaperones superfamily protein	[more]
AT4G27890.1	1.9e-14	28.48	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007052	CS domain	PFAM	PF04969	CS	coord: 21..93 e-value: 1.7E-16 score: 61.0
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 16..104 score: 15.842836
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 16..102 e-value: 7.8E-22 score: 79.6
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 9..115
None	No IPR available	GENE3D	1.20.5.740	Single helix bin	coord: 103..131 e-value: 2.1E-7 score: 32.6
None	No IPR available	PANTHER	PTHR12356:SF18	HSP20-LIKE CHAPERONES SUPERFAMILY PROTEIN	coord: 2..148
None	No IPR available	CDD	cd06467	p23_NUDC_like	coord: 21..104 e-value: 1.43657E-34 score: 114.182
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 2..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G000680.1	CmaCh13G000680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0051082	unfolded protein binding