CmaCh13G000180 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G000180
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionStructure-specific endonuclease subunit SLX1 homolog
LocationCma_Chr13: 234940 .. 238411 (+)
RNA-Seq ExpressionCmaCh13G000180
SyntenyCmaCh13G000180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCGGAGGAGGAAAGAGAAGCCGGAAATCCCTAAAACCATGGCTGTTGCAGAAGAGAAGAAGGAAGACGATGAAGATGAAGAAAGGGGTAACGAAGGGAACGGTTTCTTTTCATGCTATCTCTTGGCCTCTGCGTGCCCTCGTTACAAAGGCCATACCTATATTGGGTTCGATTCTTTTCTCTTCTTGCATCCCTAGATCGGATCTTCTATCTGCTTGTCTTCTCTCTGAAATAATGGATTGAAAAACGCCGTTTTACTATCTCTGGATACTCGGATCTGTTTCTCTACTTTTCAATTCTGGAAATTTCTTTACCATCTTTCTTTTGCTTCCTGCCTTAATTAATTGAGTGAGTGGGAACATCAAGAAATGTGAGAAATGCGTAAATGAGATTCACAGTGAACTGTTATTTGGAATTTCAGATTCACAGTGAACCCTAAACGTAGAATCAGACAGCACAATGGCGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAAATGGTGTTCTGCATTTACGGCTTCCCCACCAATGTCTCTGCTCTTCAGGTTACATTTCCGGACTTCGAGCTCTACAAATCGCTCGATTGTGCGTCTTTTATGCATCGAGTGCCTTCTACTAGCTGAATGACTCTTCGATGACTTTAATTGTATACGGTTAGGGGTTTCGGGAATTTACCAACATGTGTTGGTGGTTTCCTTTTTAACCTGTATCTTAATTTGATGTTCTAACTGTGAATGCAGTTTGAATGGGCCTGGCAGCATCCTAATGAGTCATTAGCCGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTATCTGGAATTGCCAACAAAATTAAACTTGCATACACAATGCTCACACTTCCAGCTTGGTGTAGGTATGAGAAAATTTATACAACATCCAATTTTTCTGTCAAATTTGTTGGAAATGTGAACATAATTAAGGACAATATCCTTATAACTGTGAGGTTTTTTGGGTGCAACCAAAGTTAAAGTCTGATAGGGACAATGTCTTACTATTATGATTTATAAAGAACAAACTGATGCAAATTTCAATCAAATTTGTCTGTCCTGCTCTCTATTCACTTTTTCCTCCTTATCCTTGCAGTTTGAATATTACTGTAAACTACTTCTCAACAAAGTACATGAATAATGCGGCTGGTTGCCCAAGTTTGCCAGGGCATATGAGGGTCCAAATTTCCCCCATCGATGAGCTCCCATGCTATTCCGAAGGAGATCGATGTGTGCTTGAAAATGAAAATGACTGGGAGTATAATAAAGAATATGAAGAAGTTTGTAGTTCTCAAGTACATGGATTGATGACTGAAGTTCCAAATGAAATTCCTCAAACGTTGATGGATTACTCGACAGGTACAGATGGAAGACCTCATGAATTGCGTGGATCCGATGAAGAACTAGACGACAATGAACAAGTGCCACATTCTTCGTGTACTCCGTCTTATATTGATGTCGGTGTGTCTTATGACTTGCGTGGATGTGATGAACAAGAGCCGGCTTTGTGTGCTCAGCCTTGTACTGTAGAAGGTTGGACTGAAATCATCATCGATGATGGAGAGGAAAACCAATTAGAAGGGAGTGGTATGAAATTGCAGCAGCAACCTGGTAGGAAGAAGAACTTATCAGGAATAGCTACTGAAATCAGCAAAGTTTCATATGGGCTTCCTCCTGTTGAGTATGAGGTTATAGACGTGTCTACCCCGTCTCCCGTCTGCAGAACAAGTTCGCATAAATTCAAGAGAAGACTTATTACTGGTAGGTCTGAGATTGTTGACTTGACTAAATCTCCTACGTTTATCCAATTATAGAACGATGGATGAATTTGGATTCTGCAAGTAAGTACTAATCTGTGTGCTGCTGCAGATAGTATTTTCAACCCTTTCAGAGGCAACGTGGGCTCAAATTTGGTTGACCAAATAGAGGGGGGAACAATAACATGTTGTTAAGTTATATATAATGGCCTTTTTTTCAAAGGCCATTTTAAGGGGATCAAGTGTGAAAAGAACAATAGAATGGCTTCTGTTCTATAGAACGTGGTATCAATTAACTTGTTCCAAATGAGATCGGACTTGGAAGAATAACTAGTTATATCTTCTCATAGTAATCTTTTGTTACTATTGGTTTGGTTACTGAAAGTCGAGACATGGTTAGGTTAGACTGCACTTCGTCTACCACTTAGCTCAAACTGTTTTGTTTTGTTTCTGTGTTCTTCCTCCATAGCTTTCTAATTTATTAGTTTTTGGAATCTGAATTACTCTGTTTATTATAAAATCAATAAGGATCAGATTTCCCACTATGATGGCAGTTTTTATGAAGATGGATCGCAATTAACGCCTCTGCATCCTGGATTAGCGACCAAGCTGTAATGTGTCCTCATTTCTGCCTTCGTTTTGGGGTCAACACACACACATGGACATCAGCAGTTCATCCATATGCATATAAAGCTTTTTGTCTTTCACATTATTATTATTATTATTATTATTGACCAACTATTAATTAACTAAGTAAATATGCATAAAGATTTGAGAGATTAAAGATATTTTATTCCAAACTTGACTCATTCCCATCACAGTGGTTTATTTATATGGATGTTGGTGTTGGTAGATCCTCCTCACTATTGAAAAAGGGAGAGGAAACATGAATAAGCTGAAGAAGGTGAGGACAAGAGACGATATGTGGATTGTGGAAGAAGATTACCACACCGGAGTATCAGCCTCGGTGCCATTCCAGTGGGAGTCAGAGCCAGGCACTCCCAAGGCCAATTTCCCTGAAAATGGGGCCTTCCTCTCTCCTCTCACGCCCCCACCTTCCTATTTCTCCACTAATCCCAACTCCCCCCTCGGCCTTAATTCTTCTAAGCCCTTTCATAGAGCCAGTTTCCTCAACAATGTCTTCAGAAAGCTTTCTATGAAGGCCAGTCTGCAGCCTCGATCGCCCGGCTCTTTGTTGTCATCTTCGTCTTCGAGTTCTAGCAGCAGGGAAAGAGGGACACCCGGAAGCCCGAGGAGATTATCATTTGATTCGAGGGTAGACGATGACAACGGCAACGAAGAGGAGAATGTTGAATCACCTGTTTCTACTTTGTCCTTTGGACATGGAAATGATGAAGGATGCTACCCAAAGTTGGTTAAGGTATTTACTAGAGATTCTAAATGATCGACGAACTTTTGTTTTTTCTTTTTTTTGAGTTTAAGAATGTGAATCAAACCATCAATATTTAAGATGGTATATACTTTATTTACCGAGCTATAATCGGTTGTTTCATGTGGTTATAATCTTCTTTTCTAAATAACTATGTATGCTTGAACATATTCTAATTCCAACATATCAGAATACCTCTAATAAAGAGGTGAATTTCCATGAAACATATGAAAGAAAGTAGATTGAAGAATCA

mRNA sequence

AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCGGAGGAGGAAAGAGAAGCCGGAAATCCCTAAAACCATGGCTGTTGCAGAAGAGAAGAAGGAAGACGATGAAGATGAAGAAAGGGGTAACGAAGGGAACGGTTTCTTTTCATGCTATCTCTTGGCCTCTGCGTGCCCTCGTTACAAAGGCCATACCTATATTGGATTCACAGTGAACCCTAAACGTAGAATCAGACAGCACAATGGCGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAAATGGTGTTCTGCATTTACGGCTTCCCCACCAATGTCTCTGCTCTTCAGTTTGAATGGGCCTGGCAGCATCCTAATGAGTCATTAGCCGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTATCTGGAATTGCCAACAAAATTAAACTTGCATACACAATGCTCACACTTCCAGCTTGGTGTAGTTTGAATATTACTGTAAACTACTTCTCAACAAAGTACATGAATAATGCGGCTGGTTGCCCAAGTTTGCCAGGGCATATGAGGGTCCAAATTTCCCCCATCGATGAGCTCCCATGCTATTCCGAAGGAGATCGATGTGTGCTTGAAAATGAAAATGACTGGGAGTATAATAAAGAATATGAAGAAGTTTGTAGTTCTCAAGTACATGGATTGATGACTGAAGTTCCAAATGAAATTCCTCAAACGTTGATGGATTACTCGACAGGTACAGATGGAAGACCTCATGAATTGCGTGGATCCGATGAAGAACTAGACGACAATGAACAAGTGCCACATTCTTCGTGTACTCCGTCTTATATTGATGTCGGTGTGTCTTATGACTTGCGTGGATGTGATGAACAAGAGCCGGCTTTGTGTGCTCAGCCTTGTACTGTAGAAGGTTGGACTGAAATCATCATCGATGATGGAGAGGAAAACCAATTAGAAGGGAGTGGTATGAAATTGCAGCAGCAACCTGGTAGGAAGAAGAACTTATCAGGAATAGCTACTGAAATCAGCAAAGTTTCATATGGGCTTCCTCCTGTTGAGTATGAGGTTATAGACGTGTCTACCCCGTCTCCCGTCTGCAGAACAAGTTCGCATAAATTCAAGAGAAGACTTATTACTGATAGTATTTTCAACCCTTTCAGAGGCAACATCCTCCTCACTATTGAAAAAGGGAGAGGAAACATGAATAAGCTGAAGAAGGTGAGGACAAGAGACGATATGTGGATTGTGGAAGAAGATTACCACACCGGAGTATCAGCCTCGGTGCCATTCCAGTGGGAGTCAGAGCCAGGCACTCCCAAGGCCAATTTCCCTGAAAATGGGGCCTTCCTCTCTCCTCTCACGCCCCCACCTTCCTATTTCTCCACTAATCCCAACTCCCCCCTCGGCCTTAATTCTTCTAAGCCCTTTCATAGAGCCAGTTTCCTCAACAATGTCTTCAGAAAGCTTTCTATGAAGGCCAGTCTGCAGCCTCGATCGCCCGGCTCTTTGTTGTCATCTTCGTCTTCGAGTTCTAGCAGCAGGGAAAGAGGGACACCCGGAAGCCCGAGGAGATTATCATTTGATTCGAGGGTAGACGATGACAACGGCAACGAAGAGGAGAATGTTGAATCACCTGTTTCTACTTTGTCCTTTGGACATGGAAATGATGAAGGATGCTACCCAAAGTTGGTTAAGGTATTTACTAGAGATTCTAAATGATCGACGAACTTTTGTTTTTTCTTTTTTTTGAGTTTAAGAATGTGAATCAAACCATCAATATTTAAGATGGTATATACTTTATTTACCGAGCTATAATCGGTTGTTTCATGTGGTTATAATCTTCTTTTCTAAATAACTATGTATGCTTGAACATATTCTAATTCCAACATATCAGAATACCTCTAATAAAGAGGTGAATTTCCATGAAACATATGAAAGAAAGTAGATTGAAGAATCA

Coding sequence (CDS)

ATGCGGAGGAGGAAAGAGAAGCCGGAAATCCCTAAAACCATGGCTGTTGCAGAAGAGAAGAAGGAAGACGATGAAGATGAAGAAAGGGGTAACGAAGGGAACGGTTTCTTTTCATGCTATCTCTTGGCCTCTGCGTGCCCTCGTTACAAAGGCCATACCTATATTGGATTCACAGTGAACCCTAAACGTAGAATCAGACAGCACAATGGCGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAAATGGTGTTCTGCATTTACGGCTTCCCCACCAATGTCTCTGCTCTTCAGTTTGAATGGGCCTGGCAGCATCCTAATGAGTCATTAGCCGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTATCTGGAATTGCCAACAAAATTAAACTTGCATACACAATGCTCACACTTCCAGCTTGGTGTAGTTTGAATATTACTGTAAACTACTTCTCAACAAAGTACATGAATAATGCGGCTGGTTGCCCAAGTTTGCCAGGGCATATGAGGGTCCAAATTTCCCCCATCGATGAGCTCCCATGCTATTCCGAAGGAGATCGATGTGTGCTTGAAAATGAAAATGACTGGGAGTATAATAAAGAATATGAAGAAGTTTGTAGTTCTCAAGTACATGGATTGATGACTGAAGTTCCAAATGAAATTCCTCAAACGTTGATGGATTACTCGACAGGTACAGATGGAAGACCTCATGAATTGCGTGGATCCGATGAAGAACTAGACGACAATGAACAAGTGCCACATTCTTCGTGTACTCCGTCTTATATTGATGTCGGTGTGTCTTATGACTTGCGTGGATGTGATGAACAAGAGCCGGCTTTGTGTGCTCAGCCTTGTACTGTAGAAGGTTGGACTGAAATCATCATCGATGATGGAGAGGAAAACCAATTAGAAGGGAGTGGTATGAAATTGCAGCAGCAACCTGGTAGGAAGAAGAACTTATCAGGAATAGCTACTGAAATCAGCAAAGTTTCATATGGGCTTCCTCCTGTTGAGTATGAGGTTATAGACGTGTCTACCCCGTCTCCCGTCTGCAGAACAAGTTCGCATAAATTCAAGAGAAGACTTATTACTGATAGTATTTTCAACCCTTTCAGAGGCAACATCCTCCTCACTATTGAAAAAGGGAGAGGAAACATGAATAAGCTGAAGAAGGTGAGGACAAGAGACGATATGTGGATTGTGGAAGAAGATTACCACACCGGAGTATCAGCCTCGGTGCCATTCCAGTGGGAGTCAGAGCCAGGCACTCCCAAGGCCAATTTCCCTGAAAATGGGGCCTTCCTCTCTCCTCTCACGCCCCCACCTTCCTATTTCTCCACTAATCCCAACTCCCCCCTCGGCCTTAATTCTTCTAAGCCCTTTCATAGAGCCAGTTTCCTCAACAATGTCTTCAGAAAGCTTTCTATGAAGGCCAGTCTGCAGCCTCGATCGCCCGGCTCTTTGTTGTCATCTTCGTCTTCGAGTTCTAGCAGCAGGGAAAGAGGGACACCCGGAAGCCCGAGGAGATTATCATTTGATTCGAGGGTAGACGATGACAACGGCAACGAAGAGGAGAATGTTGAATCACCTGTTTCTACTTTGTCCTTTGGACATGGAAATGATGAAGGATGCTACCCAAAGTTGGTTAAGGTATTTACTAGAGATTCTAAATGA

Protein sequence

MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPIDELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRPHELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIIDDGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSHKFKRRLITDSIFNPFRGNILLTIEKGRGNMNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFSTNPNSPLGLNSSKPFHRASFLNNVFRKLSMKASLQPRSPGSLLSSSSSSSSSRERGTPGSPRRLSFDSRVDDDNGNEEENVESPVSTLSFGHGNDEGCYPKLVKVFTRDSK
Homology
BLAST of CmaCh13G000180 vs. ExPASy Swiss-Prot
Match: Q8BX32 (Structure-specific endonuclease subunit SLX1 OS=Mus musculus OX=10090 GN=Slx1b PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 6.7e-30
Identity = 65/162 (40.12%), Postives = 92/162 (56.79%), Query Frame = 0

Query: 36  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVFCIYGF 95
           FF  YLL    PR++G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MV  I+GF
Sbjct: 10  FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGF 69

Query: 96  PTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNY 155
           P+ V+AL+FEWAWQHP  S  +       +S +  A  +++   ML +P W  L +T+ +
Sbjct: 70  PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRW 129

Query: 156 FSTKYMNNAAGCPSLPGHMRVQISP------IDELPCYSEGD 191
               + +    CP+ P HM +   P      + + P  SE D
Sbjct: 130 LRPDFRHEL--CPAPPAHMPIAFGPPPPQPLVPKRPAVSEAD 169

BLAST of CmaCh13G000180 vs. ExPASy Swiss-Prot
Match: Q5PQP5 (Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus OX=10116 GN=Slx1b PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.3e-29
Identity = 64/162 (39.51%), Postives = 91/162 (56.17%), Query Frame = 0

Query: 36  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVFCIYGF 95
           FF  YLL    PR++G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MV  ++GF
Sbjct: 10  FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGF 69

Query: 96  PTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNY 155
           P+ V+AL+FEWAWQHP  S  +       +S +     +++   ML +P W  L +TV +
Sbjct: 70  PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVRW 129

Query: 156 FSTKYMNNAAGCPSLPGHMRVQISP------IDELPCYSEGD 191
               + +    CP+ P HM +   P      + + P  SE D
Sbjct: 130 LRPDFRHEL--CPAPPPHMPIAFGPPPPQPLVPKRPAASEAD 169

BLAST of CmaCh13G000180 vs. ExPASy Swiss-Prot
Match: Q32PI0 (Structure-specific endonuclease subunit SLX1 OS=Bos taurus OX=9913 GN=SLX1A PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-27
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 0

Query: 36  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVFCIYGF 95
           FF  YLL    PR++G  Y+GFTVNP RR++QHN G  + GAWRT  + PWEMV  ++GF
Sbjct: 6   FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGF 65

Query: 96  PTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNY 155
           P+ V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W  L +T+ +
Sbjct: 66  PSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRW 125

Query: 156 FSTKYMNNAAGCPSLPGHMRVQISP 180
               +  +   CP  P HM +   P
Sbjct: 126 LRADFRQDL--CPPPPPHMPLAFGP 148

BLAST of CmaCh13G000180 vs. ExPASy Swiss-Prot
Match: A7STV9 (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis OX=45351 GN=v1g174298 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.5e-26
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 0

Query: 33  GNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKRKRPWEMVFCI 92
           G+GF   YLL    P++KGHTYIG+TVNP RRI+QHNG + + GA++T RK+PW M+  +
Sbjct: 7   GSGFHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSRKKPWNMILIV 66

Query: 93  YGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLS-GIANKIKLAYTMLTLPAWCSLNI 152
           +GFP ++ ALQFEWAWQ P  S  ++SAA   K     +    ++   +L +  W  L +
Sbjct: 67  HGFPNDIIALQFEWAWQKPTVSRRLKSAATKKKPRERPVQYCFRILSELLRVGPWNRLPL 126

Query: 153 TVNYFSTKYMNNAAGCPSLPGHMRVQISPI 181
            + +   +Y          P HM V   P+
Sbjct: 127 HIRWLMREYEMEFDPRCLPPFHMTVVYGPL 156

BLAST of CmaCh13G000180 vs. ExPASy Swiss-Prot
Match: Q0IH86 (Structure-specific endonuclease subunit slx1 OS=Xenopus laevis OX=8355 GN=slx1a PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.9e-26
Identity = 59/154 (38.31%), Postives = 85/154 (55.19%), Query Frame = 0

Query: 32  EGNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVFC 91
           E  GF+  YLL    P+YKG  YIGFTVNP+RRI+QHN G+ + GAW+T  + PW+MV  
Sbjct: 4   EVEGFYGVYLLFCTNPKYKGRIYIGFTVNPERRIQQHNGGKHKGGAWKTSGRGPWDMVLI 63

Query: 92  IYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGIANKIKLAYTMLTLPAWCSLNI 151
           ++GFP +++AL+FEWAWQHP+ S  +       K  S     + +   ML +  W  L +
Sbjct: 64  VHGFPNDIAALRFEWAWQHPHVSRRLTHVPRKTKKQSSFDFHLLVLCHMLRVAPWNRLPL 123

Query: 152 TVNYFSTKYMNNAAGCPSLPGHMRVQISPIDELP 185
           T+ +   +Y          P HM +    +   P
Sbjct: 124 TLRWLRQEYRRELPLLLQPPLHMPLAFGQVRARP 157

BLAST of CmaCh13G000180 vs. ExPASy TrEMBL
Match: A0A6J1I681 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111469571 PE=3 SV=1)

HSP 1 Score: 792.7 bits (2046), Expect = 9.8e-226
Identity = 378/379 (99.74%), Postives = 379/379 (100.00%), Query Frame = 0

Query: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60
           MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60

Query: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120
           PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
Sbjct: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120

Query: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180
           ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI
Sbjct: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180

Query: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240
           DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP
Sbjct: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240

Query: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300
           HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID
Sbjct: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300

Query: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360
           DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH
Sbjct: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360

Query: 361 KFKRRLITDSIFNPFRGNI 380
           KFKRRLITDSIFNPFRGN+
Sbjct: 361 KFKRRLITDSIFNPFRGNV 379

BLAST of CmaCh13G000180 vs. ExPASy TrEMBL
Match: A0A6J1HZQ2 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111469571 PE=3 SV=1)

HSP 1 Score: 769.6 bits (1986), Expect = 8.9e-219
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0

Query: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60
           MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60

Query: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120
           PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
Sbjct: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120

Query: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180
           ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI
Sbjct: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180

Query: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240
           DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP
Sbjct: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240

Query: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300
           HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID
Sbjct: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300

Query: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360
           DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH
Sbjct: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360

Query: 361 KFKRRLIT 369
           KFKRRLIT
Sbjct: 361 KFKRRLIT 368

BLAST of CmaCh13G000180 vs. ExPASy TrEMBL
Match: A0A6J1HKB9 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464889 PE=3 SV=1)

HSP 1 Score: 747.3 bits (1928), Expect = 4.7e-212
Identity = 359/379 (94.72%), Postives = 367/379 (96.83%), Query Frame = 0

Query: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60
           MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGN FFSCYLLASACPRYKGHTYIGFTVN
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNRFFSCYLLASACPRYKGHTYIGFTVN 60

Query: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120
           PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
Sbjct: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120

Query: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180
           ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQ+SPI
Sbjct: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQVSPI 180

Query: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240
           DELPCYSEGDRCVLENENDWEYN+EY+EVC SQVH LMTEVPNEIPQTLMDY TGTDGRP
Sbjct: 181 DELPCYSEGDRCVLENENDWEYNREYKEVCDSQVHDLMTEVPNEIPQTLMDYQTGTDGRP 240

Query: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300
           HELRGSDEEL+DNEQVPHSSCTPSYIDV VSYDLRGCDEQEPALCAQPC VEG TEIIID
Sbjct: 241 HELRGSDEELEDNEQVPHSSCTPSYIDVSVSYDLRGCDEQEPALCAQPCIVEGRTEIIID 300

Query: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360
           DGEEN LEGSG KLQQQPGR KNLSGIATEIS+VSYGLPPVE EVIDVSTPSP CRTSS+
Sbjct: 301 DGEENHLEGSGTKLQQQPGR-KNLSGIATEISEVSYGLPPVENEVIDVSTPSPDCRTSSY 360

Query: 361 KFKRRLITDSIFNPFRGNI 380
           KFKRR+ITDSIFNPFRGN+
Sbjct: 361 KFKRRVITDSIFNPFRGNV 378

BLAST of CmaCh13G000180 vs. ExPASy TrEMBL
Match: A0A6J1HMD6 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464889 PE=3 SV=1)

HSP 1 Score: 724.2 bits (1868), Expect = 4.3e-205
Identity = 349/368 (94.84%), Postives = 356/368 (96.74%), Query Frame = 0

Query: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60
           MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGN FFSCYLLASACPRYKGHTYIGFTVN
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNRFFSCYLLASACPRYKGHTYIGFTVN 60

Query: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120
           PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
Sbjct: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120

Query: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180
           ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQ+SPI
Sbjct: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQVSPI 180

Query: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240
           DELPCYSEGDRCVLENENDWEYN+EY+EVC SQVH LMTEVPNEIPQTLMDY TGTDGRP
Sbjct: 181 DELPCYSEGDRCVLENENDWEYNREYKEVCDSQVHDLMTEVPNEIPQTLMDYQTGTDGRP 240

Query: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300
           HELRGSDEEL+DNEQVPHSSCTPSYIDV VSYDLRGCDEQEPALCAQPC VEG TEIIID
Sbjct: 241 HELRGSDEELEDNEQVPHSSCTPSYIDVSVSYDLRGCDEQEPALCAQPCIVEGRTEIIID 300

Query: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360
           DGEEN LEGSG KLQQQPGR KNLSGIATEIS+VSYGLPPVE EVIDVSTPSP CRTSS+
Sbjct: 301 DGEENHLEGSGTKLQQQPGR-KNLSGIATEISEVSYGLPPVENEVIDVSTPSPDCRTSSY 360

Query: 361 KFKRRLIT 369
           KFKRR+IT
Sbjct: 361 KFKRRVIT 367

BLAST of CmaCh13G000180 vs. ExPASy TrEMBL
Match: A0A1S3C574 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis melo OX=3656 GN=LOC103497035 PE=3 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 4.2e-168
Identity = 302/382 (79.06%), Postives = 328/382 (85.86%), Query Frame = 0

Query: 1   MRRRKEKPEIPKTMAVA---EEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGF 60
           MR+RKEKPEI KTMA     EEK++DDE+EERGN  NGFFSCYLLASACPR+KGHTYIGF
Sbjct: 1   MRKRKEKPEICKTMAAVVQDEEKEDDDEEEERGNGVNGFFSCYLLASACPRFKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVR 120
           TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVSALQFEWAWQHPNESLAVR
Sbjct: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR 120

Query: 121 SAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQI 180
           SAAATFKSLSG+ANK+KLAYTMLTLPAWC LNITVNYFSTK+M NAAGCPSLP HM+VQ+
Sbjct: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQV 180

Query: 181 SPIDELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTD 240
           SPIDELPCYSEGD+ VLENE+DWEY++E EE+CS QV+G M EV NE+PQ LMDY TGTD
Sbjct: 181 SPIDELPCYSEGDQGVLENEDDWEYDRESEEICSFQVYGSMKEVSNEVPQKLMDYQTGTD 240

Query: 241 GRPHE-LRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGC------DEQEPALCAQPCT 300
           GRP   LRG D+EL+ NEQVP SSCTPSY+DVG+SYDL  C      DE+E A C Q CT
Sbjct: 241 GRPPPVLRGCDKELETNEQVPPSSCTPSYVDVGMSYDLCACDEGLENDEREAASCGQSCT 300

Query: 301 VEGW--TEIIIDDGEENQLEGSGMKLQQQPGRKKNLSGIATEISKV---SYGL-PPVEYE 360
           V G   TEIIIDDGEENQ EGSGM LQ+QPGRK   SGIA+EISKV   S GL P VEYE
Sbjct: 301 VAGTSRTEIIIDDGEENQFEGSGMNLQEQPGRKNLTSGIASEISKVSRCSNGLVPTVEYE 360

Query: 361 VIDVSTPSPVCRTSSHKFKRRL 367
           VIDVSTPSP CRTSSH+FKRR+
Sbjct: 361 VIDVSTPSPDCRTSSHRFKRRV 382

BLAST of CmaCh13G000180 vs. NCBI nr
Match: XP_022970648.1 (uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970649.1 uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970650.1 uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970651.1 uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima])

HSP 1 Score: 792.7 bits (2046), Expect = 2.0e-225
Identity = 378/379 (99.74%), Postives = 379/379 (100.00%), Query Frame = 0

Query: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60
           MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60

Query: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120
           PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
Sbjct: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120

Query: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180
           ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI
Sbjct: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180

Query: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240
           DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP
Sbjct: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240

Query: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300
           HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID
Sbjct: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300

Query: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360
           DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH
Sbjct: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360

Query: 361 KFKRRLITDSIFNPFRGNI 380
           KFKRRLITDSIFNPFRGN+
Sbjct: 361 KFKRRLITDSIFNPFRGNV 379

BLAST of CmaCh13G000180 vs. NCBI nr
Match: XP_022970652.1 (uncharacterized protein LOC111469571 isoform X2 [Cucurbita maxima])

HSP 1 Score: 769.6 bits (1986), Expect = 1.8e-218
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0

Query: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60
           MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60

Query: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120
           PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
Sbjct: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120

Query: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180
           ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI
Sbjct: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180

Query: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240
           DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP
Sbjct: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240

Query: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300
           HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID
Sbjct: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300

Query: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360
           DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH
Sbjct: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360

Query: 361 KFKRRLIT 369
           KFKRRLIT
Sbjct: 361 KFKRRLIT 368

BLAST of CmaCh13G000180 vs. NCBI nr
Match: XP_023519404.1 (uncharacterized protein LOC111782823 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023519405.1 uncharacterized protein LOC111782823 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 751.1 bits (1938), Expect = 6.8e-213
Identity = 359/379 (94.72%), Postives = 369/379 (97.36%), Query Frame = 0

Query: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60
           MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60

Query: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120
           PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
Sbjct: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120

Query: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180
           ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQ+SPI
Sbjct: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQVSPI 180

Query: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240
           DELPCY EGDR VLENE+DWEYN+EYEE CSS+V+GLMTEVPNEIPQ LMDY TGTDGRP
Sbjct: 181 DELPCYFEGDRRVLENEDDWEYNREYEEFCSSRVYGLMTEVPNEIPQNLMDYQTGTDGRP 240

Query: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300
           HELRGSDEEL+DNEQVPHSSCTPSYIDVGVSY+LRGCDEQEP LCAQPC VEG TEIIID
Sbjct: 241 HELRGSDEELEDNEQVPHSSCTPSYIDVGVSYELRGCDEQEPGLCAQPCIVEGRTEIIID 300

Query: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360
           DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVE EVIDVSTPSP CRTSS+
Sbjct: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVENEVIDVSTPSPDCRTSSY 360

Query: 361 KFKRRLITDSIFNPFRGNI 380
           KFKRR+ITDSIFNPFRGN+
Sbjct: 361 KFKRRVITDSIFNPFRGNV 379

BLAST of CmaCh13G000180 vs. NCBI nr
Match: XP_022964936.1 (structure-specific endonuclease subunit SLX1 homolog isoform X1 [Cucurbita moschata] >XP_022964937.1 structure-specific endonuclease subunit SLX1 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 747.3 bits (1928), Expect = 9.8e-212
Identity = 359/379 (94.72%), Postives = 367/379 (96.83%), Query Frame = 0

Query: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60
           MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGN FFSCYLLASACPRYKGHTYIGFTVN
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNRFFSCYLLASACPRYKGHTYIGFTVN 60

Query: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120
           PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
Sbjct: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120

Query: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180
           ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQ+SPI
Sbjct: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQVSPI 180

Query: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240
           DELPCYSEGDRCVLENENDWEYN+EY+EVC SQVH LMTEVPNEIPQTLMDY TGTDGRP
Sbjct: 181 DELPCYSEGDRCVLENENDWEYNREYKEVCDSQVHDLMTEVPNEIPQTLMDYQTGTDGRP 240

Query: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300
           HELRGSDEEL+DNEQVPHSSCTPSYIDV VSYDLRGCDEQEPALCAQPC VEG TEIIID
Sbjct: 241 HELRGSDEELEDNEQVPHSSCTPSYIDVSVSYDLRGCDEQEPALCAQPCIVEGRTEIIID 300

Query: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360
           DGEEN LEGSG KLQQQPGR KNLSGIATEIS+VSYGLPPVE EVIDVSTPSP CRTSS+
Sbjct: 301 DGEENHLEGSGTKLQQQPGR-KNLSGIATEISEVSYGLPPVENEVIDVSTPSPDCRTSSY 360

Query: 361 KFKRRLITDSIFNPFRGNI 380
           KFKRR+ITDSIFNPFRGN+
Sbjct: 361 KFKRRVITDSIFNPFRGNV 378

BLAST of CmaCh13G000180 vs. NCBI nr
Match: XP_023519403.1 (uncharacterized protein LOC111782823 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 728.0 bits (1878), Expect = 6.1e-206
Identity = 349/368 (94.84%), Postives = 358/368 (97.28%), Query Frame = 0

Query: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60
           MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVN 60

Query: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120
           PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
Sbjct: 61  PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA 120

Query: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPI 180
           ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQ+SPI
Sbjct: 121 ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQVSPI 180

Query: 181 DELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRP 240
           DELPCY EGDR VLENE+DWEYN+EYEE CSS+V+GLMTEVPNEIPQ LMDY TGTDGRP
Sbjct: 181 DELPCYFEGDRRVLENEDDWEYNREYEEFCSSRVYGLMTEVPNEIPQNLMDYQTGTDGRP 240

Query: 241 HELRGSDEELDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALCAQPCTVEGWTEIIID 300
           HELRGSDEEL+DNEQVPHSSCTPSYIDVGVSY+LRGCDEQEP LCAQPC VEG TEIIID
Sbjct: 241 HELRGSDEELEDNEQVPHSSCTPSYIDVGVSYELRGCDEQEPGLCAQPCIVEGRTEIIID 300

Query: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSH 360
           DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVE EVIDVSTPSP CRTSS+
Sbjct: 301 DGEENQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVENEVIDVSTPSPDCRTSSY 360

Query: 361 KFKRRLIT 369
           KFKRR+IT
Sbjct: 361 KFKRRVIT 368

BLAST of CmaCh13G000180 vs. TAIR 10
Match: AT2G30350.2 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 268.9 bits (686), Expect = 9.5e-72
Identity = 161/367 (43.87%), Postives = 213/367 (58.04%), Query Frame = 0

Query: 25  EDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 84
           ED   G +G GFF+CYLL S  PR+KG TYIGFTVNP+RRIRQHNGEI  GAWRTK+KRP
Sbjct: 16  EDGVTGKDGKGFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRP 75

Query: 85  WEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGIANKIKLAYTMLTLPA 144
           WEMV CIYGFPTNVSALQFEWAWQHP ES+AVR AAA FKS SG+A+KIKL YTML LPA
Sbjct: 76  WEMVLCIYGFPTNVSALQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPA 135

Query: 145 WCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQISPIDELPCYSE-GDRCVLENENDWEYN 204
           W SLN+TVNYFS+KY ++    PSLP HM+VQ+  +++L  +++  D    E+E   E N
Sbjct: 136 WNSLNLTVNYFSSKYAHHGGKSPSLPLHMKVQVCAMEDLQYFTKVDDSSQPEDEESPEVN 195

Query: 205 KEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTDGRPHE-----LRGSDEE--------- 264
           +E ++              + + Q     ++ +D R  E     +   DEE         
Sbjct: 196 EEDDDDDDDD--------SSNLSQPGNSNTSSSDDRHFEKAKEPVTVFDEEDRLANFSGF 255

Query: 265 --LDDNEQVPHSSCTPSYIDVGVSYDLRGCDEQEPALC---AQPCTVEGWTEIIIDDGEE 324
             LD+ E V       S+I VG    +R  +++   +        T  G  EI+ D+   
Sbjct: 256 GLLDEEETVEDE---VSHITVG---SIRATEKEPETVFNDRLASFTCFGLVEIVEDEVSH 315

Query: 325 NQLEGSGMKLQQQPGRKKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSHKFKR 372
             +  +    ++   R+ +++   TE          V+ EVID+ TPSP CR  S   KR
Sbjct: 316 GTIGSTEAMEKECRKRRNHITSTTTE----------VDVEVIDLMTPSPSCRAGS-SMKR 357

BLAST of CmaCh13G000180 vs. TAIR 10
Match: AT2G30350.1 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 139.4 bits (350), Expect = 8.7e-33
Identity = 102/291 (35.05%), Postives = 149/291 (51.20%), Query Frame = 0

Query: 101 LQFEWAWQHPNESLAVRSAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYM 160
           LQFEWAWQHP ES+AVR AAA FKS SG+A+KIKL YTML LPAW SLN+TVNYFS+KY 
Sbjct: 58  LQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNYFSSKYA 117

Query: 161 NNAAGCPSLPGHMRVQISPIDELPCYSE-GDRCVLENENDWEYNKEYEEVCSSQVHGLMT 220
           ++    PSLP HM+VQ+  +++L  +++  D    E+E   E N+E ++           
Sbjct: 118 HHGGKSPSLPLHMKVQVCAMEDLQYFTKVDDSSQPEDEESPEVNEEDDDDDDDD------ 177

Query: 221 EVPNEIPQTLMDYSTGTDGRPHE-----LRGSDEE-----------LDDNEQVPHSSCTP 280
              + + Q     ++ +D R  E     +   DEE           LD+ E V       
Sbjct: 178 --SSNLSQPGNSNTSSSDDRHFEKAKEPVTVFDEEDRLANFSGFGLLDEEETVEDE---V 237

Query: 281 SYIDVGVSYDLRGCDEQEPALC---AQPCTVEGWTEIIIDDGEENQLEGSGMKLQQQPGR 340
           S+I VG    +R  +++   +        T  G  EI+ D+     +  +    ++   R
Sbjct: 238 SHITVG---SIRATEKEPETVFNDRLASFTCFGLVEIVEDEVSHGTIGSTEAMEKECRKR 297

Query: 341 KKNLSGIATEISKVSYGLPPVEYEVIDVSTPSPVCRTSSHKFKRRLITDSI 372
           + +++   TE          V+ EVID+ TPSP CR  S   KRR +++ I
Sbjct: 298 RNHITSTTTE----------VDVEVIDLMTPSPSCRAGS-SMKRRRVSEFI 323

BLAST of CmaCh13G000180 vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-12
Identity = 68/172 (39.53%), Postives = 83/172 (48.26%), Query Frame = 0

Query: 405 VEEDYHTGVSASVPFQWESEPGTPKA----------------NFPENGAFLSPLTPPPSY 464
           VE DY+ G SA+VPF+WES+PGTP+                 NFP +    +PLTPPPSY
Sbjct: 20  VEGDYYGGSSAAVPFKWESQPGTPRRLSKRSSSSGFNSDSDFNFPVS----APLTPPPSY 79

Query: 465 FSTNPNSPLGLNSSKPFHRASFLNNVFRKLSMKASLQPRSPGSLLSSSSSSSSSRERGTP 524
           F  +P+S   ++  K        N +F  L  K    P SP    SSSSSSSSS     P
Sbjct: 80  FYASPSSTKHVSPKK-------TNTLFSSLLSKNRSVPSSPA---SSSSSSSSS----VP 139

Query: 525 GSPRRLSFDSRVDDDNGNEEENVESPVSTLSFGHGN--DEGCYPKLVKVFTR 559
            SP R S     D  N       ES  S+L +G  +    GCY  LVKV  R
Sbjct: 140 SSPLRTS-----DLSNRRRSMWFESG-SSLDYGSNSAKSSGCYASLVKVLLR 167

BLAST of CmaCh13G000180 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). )

HSP 1 Score: 60.8 bits (146), Expect = 3.9e-09
Identity = 57/157 (36.31%), Postives = 76/157 (48.41%), Query Frame = 0

Query: 397 RTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFSTNPNSP 456
           R  DD  I EE       AS+PF WES PGTPK +   + +   PLTPPPSY+S+   S 
Sbjct: 4   RLEDDFAIDEERSSYYGGASIPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSSGILST 63

Query: 457 LGLNSSKPFHRASFLN-NVFRKLSMKASLQPRSPGSLLSSSSSSSSSRERGTP--GSPRR 516
               S      + FL+ ++F  L        ++  S  S SS+SSSS    +P     +R
Sbjct: 64  PRTQSKVRSKLSKFLSFSMFSDLRRSNHGSKKTASSSFSWSSTSSSSSFSSSPPHSLKKR 123

Query: 517 LSFD--SRVDDDNGNEEENVESPVSTLSFGHGNDEGC 549
           +S D  S +   N  E+E   SP STL   +G   GC
Sbjct: 124 MSHDKKSPLLYANYEEDELRSSPTSTLCCSNGGRLGC 160

BLAST of CmaCh13G000180 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 6.7e-09
Identity = 52/136 (38.24%), Postives = 69/136 (50.74%), Query Frame = 0

Query: 409 YHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFSTNPNSPLGLNSSKPFHRA 468
           Y+ G  ASVPF WE+ PGTPK         L PLTPPPSY+S++ +S   L+ ++   + 
Sbjct: 32  YYYG-GASVPFLWETRPGTPKHALFSESLRLPPLTPPPSYYSSSSSSGNKLSKARTIKQT 91

Query: 469 SFLNNVFRKLSMKASLQPRSPGSLLSSSSSSSSSRERGTPGSPRRLSFDSRVDDDNGNEE 528
            F+  +  +   + S    S  S  SSSS SSSS        PR+    SR      +EE
Sbjct: 92  RFVKTLLSRHVSRPSFS-WSSASSSSSSSYSSSSPPSKVEHRPRKCYSCSRSYVKEDDEE 151

Query: 529 ENV-ESPVSTLSFGHG 544
           E V  SP STL +  G
Sbjct: 152 EIVSSSPTSTLCYKRG 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8BX326.7e-3040.12Structure-specific endonuclease subunit SLX1 OS=Mus musculus OX=10090 GN=Slx1b P... [more]
Q5PQP53.3e-2939.51Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus OX=10116 GN=Sl... [more]
Q32PI01.4e-2740.69Structure-specific endonuclease subunit SLX1 OS=Bos taurus OX=9913 GN=SLX1A PE=2... [more]
A7STV94.5e-2640.00Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis O... [more]
Q0IH865.9e-2638.31Structure-specific endonuclease subunit slx1 OS=Xenopus laevis OX=8355 GN=slx1a ... [more]
Match NameE-valueIdentityDescription
A0A6J1I6819.8e-22699.74Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661... [more]
A0A6J1HZQ28.9e-219100.00Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661... [more]
A0A6J1HKB94.7e-21294.72Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita moschata OX=36... [more]
A0A6J1HMD64.3e-20594.84Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita moschata OX=36... [more]
A0A1S3C5744.2e-16879.06Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis melo OX=3656 GN=... [more]
Match NameE-valueIdentityDescription
XP_022970648.12.0e-22599.74uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970649... [more]
XP_022970652.11.8e-218100.00uncharacterized protein LOC111469571 isoform X2 [Cucurbita maxima][more]
XP_023519404.16.8e-21394.72uncharacterized protein LOC111782823 isoform X2 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_022964936.19.8e-21294.72structure-specific endonuclease subunit SLX1 homolog isoform X1 [Cucurbita mosch... [more]
XP_023519403.16.1e-20694.84uncharacterized protein LOC111782823 isoform X1 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT2G30350.29.5e-7243.87Excinuclease ABC, C subunit, N-terminal [more]
AT2G30350.18.7e-3335.05Excinuclease ABC, C subunit, N-terminal [more]
AT1G06930.11.3e-1239.53unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; ... [more]
AT3G56260.23.9e-0936.31unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G40475.16.7e-0938.24unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035901GIY-YIG endonuclease superfamilyGENE3D3.40.1440.10coord: 34..134
e-value: 4.8E-24
score: 86.3
IPR000305GIY-YIG endonucleasePFAMPF01541GIY-YIGcoord: 39..112
e-value: 3.0E-12
score: 46.7
IPR000305GIY-YIG endonucleasePROSITEPS50164GIY_YIGcoord: 35..117
score: 17.19891
IPR007789Protein of unknown function DUF688PFAMPF05097DUF688coord: 415..539
e-value: 1.4E-4
score: 21.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 483..508
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 483..548
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 235..260
NoneNo IPR availablePANTHERPTHR20208STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1coord: 18..219
NoneNo IPR availablePANTHERPTHR20208:SF10STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1coord: 18..219
NoneNo IPR availableCDDcd10455GIY-YIG_SLX1coord: 36..110
e-value: 6.62741E-51
score: 167.024
IPR027520Structure-specific endonuclease subunit Slx1HAMAPMF_03100Endonuc_su_Slx1coord: 32..371
score: 23.45982

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G000180.1CmaCh13G000180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0051569 regulation of histone H3-K4 methylation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006281 DNA repair
cellular_component GO:0016593 Cdc73/Paf1 complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0033557 Slx1-Slx4 complex
molecular_function GO:0017108 5'-flap endonuclease activity
molecular_function GO:0008821 crossover junction endodeoxyribonuclease activity
molecular_function GO:0000993 RNA polymerase II complex binding