CmaCh12G013200 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G013200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	60S ribosomal protein L18a-like protein
Location	Cma_Chr12: 10102093 .. 10104514 (-)
RNA-Seq Expression	CmaCh12G013200
Synteny	CmaCh12G013200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTCGTTCGTTCGTTTGTTTGTTCGTTCGTTCGTTTGTTTGTTCGTTCGTTCGTTCGTTCGTTCCTCCAATTCCATTTCTGATCCGTGGAAAGCGAGACAAATTGCATTTTCAGTCGCGTTTGTTCACCTCTTCCTCAATTCCGGTATCTTTTTCCTCTCGTTCTTATTTCAATGTTTCATTTTTCATCTTCTTTTTCTGTTTCTCTTCGATTTTTCTGCTGTGAGTTCATTAATTCGTGTTTGCAGTATTTTGTTCTTCGATTTCTCTTTTGTTTTGTTCGGTAATTGATGGATGTTGCAGAAATGTCCCTTCGTTTTTGAACGATGGTATCTGCGACCTTTGGCTTCGCTTGGTTGGGGATTTGAGATAGGAGTTTAGGATTTTTGGCACCTGGAGAAGTTTGTTATTGCAATTCGTATCCCTTGTGCCTTTTATTCTAGACTTTAGCGTTGGAGCATGACTATGATTCACGAACTGCAATTTTAGTCAAGCTAGGTTATTTTATTACCAATTTATCGGATGGCTTGTGGAAGATTGAAAAGCTTCATAGGCTAGTGTCTTCATTGAGTAGTTTTCTTTTTAGTCAACATGAAAGTCTGATGAATTTGATAAAAGAAACTTGGATTATTTGGATTTTAAATACCAAACTAGGGGGAATTTTAACTCCAGATGCAATTCTTCTGATTGCTGCATCTTGTCGGGTGTCATTTGATTATATTGTTCTAACTACTGAGTAGATTTTAATCTCTTGACACAGGTGTAGAAAGTGGATAGTGCAAACTTGAAGAGCTTATCCTTCCATAAACTCCAGCTTCAACATGGATCCAAGTACCGTAATTCTTCTTATAACTAGGATTCCTCATAATAATAATAAAAAAGAAGGCATGATTATGTGGGTGCAAAAGATGTTTTATTTTGTTGGGTTGTAACATAGTTCTTGCCTAGTAATTTCTTTAATATTCAAGGTTCATTAAGGTGTCTTGGACATTCATATGTGCCTATGCTCATTGTTATGCTTTCACTCCTTAGTTATACGTTTCATTAAAGAATGTAGTCACATTCAGAAATTGAAGCTAATTTAGTGTCTAATAATCGGTTTTTGACACTGTTGGCGGTCTTCACGATAGCAATAATACAAGATCGAACTGAAAAAATAGTTTTTACAAAATAGATGGAACAATTTCTTGAGTTGTGAACATGTTTTCGGGATGTTAAAAATGCAGAAGTTGAACAGACAGTGCAACTGGTGGAATCGGTCCCTGATAAGCATCCCGATCTTTTGAGGCCATCTGCCCGAATCTGTTCCATATTCGAAGGTAAATCAGGGATAATAAAACATGCTGGCTAGGACATTTTTGTTGAGGATGGTTGGGAGGGAGTCCACATTGGCTAATTTAGAGAATGATAATGGGTTTATAAATAGCGAATACATCTCCATTGGTATGAGGCCTCCTTAGGAAGTCCAATGTAAAAACATGAGAGTTTTTGGTTGCTGGAGTCTTTCGCTTGTCTAGTCATTTATGTCCAAAATGATTAACGATGAAAGCTATCTTTACATGATGTGCTTGTATTCACCTAGGCCAAGAAAAAGATGTGTCTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGCATTGGATGGTTCTCGTGAGTATTGTGTAACTTTCTCTGTAAAAACAATTTGGGGAACCTGTCGTCAAGTTTACTGATCTTACCTTTGTATCTTTGTCTTTCTCTTCAGTTTCCTTCTCGGGTTTTTGTTCCCGATAATGTGGTACTATGCCACAATTCTCTATTTCTGGAACACCCGCAGAGATCCCAGGGAACGAGCTGGTTTAGCTGCGTCTGCCATTGCTGTAAGTGTTCCTTTTTTCTTTCCCACTCCCACCCCAACCATGAAAATCTTAGGAAAAACAAACATAATGACATCAAGTAGCCAAATTCCTTACATTGCTATGTATCTTGCCATCTCCTATAAGCTGTTCATTGAACATGATTCAGCTTCTAAAGAAGCAAAACAATTGTAAATGGCGCAGGCATTTGCTTGTTCGGTCATCTTGTTAATCATCGTAGCTGTTCTCCTATTATAGCCTCCCCTGTCTCACGACTCGCACTGCATTCTCTTTGCCCCTTCAACCTTGGCAACACAGTCCCAAACAGAACAGCTTCCGTGGATATGAAGATAAAGATCAAGGGGCTCTGTTGCGGGACAATGGTGATTTCTTTTACTTTTCTTTACATCAAATGTAAATGTTTATAAATCATATTTACATATATTTGCCACCTCTTTCGAGAGAGAGTTGTCACATTTGTATCACACAAAGAACATATAATACATGGATCTTATTTTATCCCAAGTT

mRNA sequence

TGTTCGTTCGTTCGTTTGTTTGTTCGTTCGTTCGTTTGTTTGTTCGTTCGTTCGTTCGTTCGTTCCTCCAATTCCATTTCTGATCCGTGGAAAGCGAGACAAATTGCATTTTCAGTCGCGTTTGTTCACCTCTTCCTCAATTCCGATTTTAATCTCTTGACACAGGTGTAGAAAGTGGATAGTGCAAACTTGAAGAGCTTATCCTTCCATAAACTCCAGCTTCAACATGGATCCAAAAGTTGAACAGACAGTGCAACTGGTGGAATCGGTCCCTGATAAGCATCCCGATCTTTTGAGGCCATCTGCCCGAATCTGTTCCATATTCGAAGGCCAAGAAAAAGATGTGTCTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGCATTGGATGGTTCTCTTTCCTTCTCGGGTTTTTGTTCCCGATAATGTGGTACTATGCCACAATTCTCTATTTCTGGAACACCCGCAGAGATCCCAGGGAACGAGCTGGTTTAGCTGCGTCTGCCATTGCTGCATTTGCTTGTTCGGTCATCTTGTTAATCATCGTAGCTGTTCTCCTATTATAGCCTCCCCTGTCTCACGACTCGCACTGCATTCTCTTTGCCCCTTCAACCTTGGCAACACAGTCCCAAACAGAACAGCTTCCGTGGATATGAAGATAAAGATCAAGGGGCTCTGTTGCGGGACAATGGTGATTTCTTTTACTTTTCTTTACATCAAATGTAAATGTTTATAAATCATATTTACATATATTTGCCACCTCTTTCGAGAGAGAGTTGTCACATTTGTATCACACAAAGAACATATAATACATGGATCTTATTTTATCCCAAGTT

Coding sequence (CDS)

ATGGATCCAAAAGTTGAACAGACAGTGCAACTGGTGGAATCGGTCCCTGATAAGCATCCCGATCTTTTGAGGCCATCTGCCCGAATCTGTTCCATATTCGAAGGCCAAGAAAAAGATGTGTCTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGCATTGGATGGTTCTCTTTCCTTCTCGGGTTTTTGTTCCCGATAATGTGGTACTATGCCACAATTCTCTATTTCTGGAACACCCGCAGAGATCCCAGGGAACGAGCTGGTTTAGCTGCGTCTGCCATTGCTGCATTTGCTTGTTCGGTCATCTTGTTAATCATCGTAGCTGTTCTCCTATTATAG

Protein sequence

MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACSVILLIIVAVLLL

Homology

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BLAST of CmaCh12G013200 vs. ExPASy Swiss-Prot
Match: Q8L9S1 (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 5.6e-04
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 61  LYDKPLPCFGCGIGWFSFLLGFLF-PIMWYYATILYFWNTRRDPRERAGLAASAIAAFAC 120
           + +  LPC G G+GWF F++GFLF  I WY    +    T  D RE+AG  A +IA    
Sbjct: 85  MIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVL-VTSVDHREKAGYVACSIA---- 144

Query: 121 SVILLIIV 128
           SV+ LI V
Sbjct: 145 SVVYLIAV 147

[Close]

BLAST of CmaCh12G013200 vs. ExPASy TrEMBL
Match: A0A6J1HNQ0 (uncharacterized protein LOC111465349 OS=Cucurbita maxima OX=3661 GN=LOC111465349 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLIIVAVLLL 133
           VILLIIVAVLLL
Sbjct: 121 VILLIIVAVLLL 132

[Close]

BLAST of CmaCh12G013200 vs. ExPASy TrEMBL
Match: A0A6J1FC32 (uncharacterized protein LOC111444050 OS=Cucurbita moschata OX=3662 GN=LOC111444050 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 127/132 (96.21%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESV DKHPDLLRPSARICSIF+GQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCG+GWFSFLLGFLFPIMWYYATILYFWN RRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLIIVAVLLL 133
           VILL+IVAVLLL
Sbjct: 121 VILLVIVAVLLL 132

[Close]

BLAST of CmaCh12G013200 vs. ExPASy TrEMBL
Match: A0A1S3CAZ9 (uncharacterized protein LOC103498658 OS=Cucumis melo OX=3656 GN=LOC103498658 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.3e-55
Identity = 110/133 (82.71%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   MDP--KVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQ 60
           MDP  K++QTVQLV+SV DKH DLLRPSARICSIF+GQ KD  DH ++KYTLL+DVED Q
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 60

Query: 61  IGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFA 120
           +GLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN RRDPRERAGLAASAIAA A
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 121 CSVILLIIVAVLL 132
           CS+ILLI+VAVLL
Sbjct: 121 CSIILLIVVAVLL 133

[Close]

BLAST of CmaCh12G013200 vs. ExPASy TrEMBL
Match: A0A5D3CGZ6 (60S ribosomal protein L18a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001100 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.3e-55
Identity = 110/133 (82.71%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   MDP--KVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQ 60
           MDP  K++QTVQLV+SV DKH DLLRPSARICSIF+GQ KD  DH ++KYTLL+DVED Q
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 60

Query: 61  IGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFA 120
           +GLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN RRDPRERAGLAASAIAA A
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 121 CSVILLIIVAVLL 132
           CS+ILLI+VAVLL
Sbjct: 121 CSIILLIVVAVLL 133

[Close]

BLAST of CmaCh12G013200 vs. ExPASy TrEMBL
Match: A0A6J1G4J6 (uncharacterized protein LOC111450686 OS=Cucurbita moschata OX=3662 GN=LOC111450686 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.3e-55
Identity = 109/134 (81.34%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MDP--KVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQ 60
           MDP  K++ TVQLV+SV D+H DLLRPSARICSIF+GQ KD SDH ++KYTLL+DVED Q
Sbjct: 1   MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQ 60

Query: 61  IGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFA 120
           +GLYDKPLPCFGCGIGWFSFLLGFLFP+MWYYATILYFWN+RRDPRERAGLAAS+IAA A
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWNSRRDPRERAGLAASSIAALA 120

Query: 121 CSVILLIIVAVLLL 133
           CSVILL++VAV LL
Sbjct: 121 CSVILLVVVAVRLL 134

[Close]

BLAST of CmaCh12G013200 vs. NCBI nr
Match: XP_022965444.1 (uncharacterized protein LOC111465349 [Cucurbita maxima] >XP_022965445.1 uncharacterized protein LOC111465349 [Cucurbita maxima])

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLIIVAVLLL 133
           VILLIIVAVLLL
Sbjct: 121 VILLIIVAVLLL 132

[Close]

BLAST of CmaCh12G013200 vs. NCBI nr
Match: KAG7021350.1 (hypothetical protein SDJN02_18039 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 4.2e-65
Identity = 128/132 (96.97%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESV DKHPDLLRPSARICSIF+GQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN RRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLIIVAVLLL 133
           VILL+IVAVLLL
Sbjct: 121 VILLVIVAVLLL 132

[Close]

BLAST of CmaCh12G013200 vs. NCBI nr
Match: XP_022937742.1 (uncharacterized protein LOC111444050 [Cucurbita moschata] >XP_022937743.1 uncharacterized protein LOC111444050 [Cucurbita moschata])

HSP 1 Score: 257.7 bits (657), Expect = 5.5e-65
Identity = 127/132 (96.21%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESV DKHPDLLRPSARICSIF+GQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCG+GWFSFLLGFLFPIMWYYATILYFWN RRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLIIVAVLLL 133
           VILL+IVAVLLL
Sbjct: 121 VILLVIVAVLLL 132

[Close]

BLAST of CmaCh12G013200 vs. NCBI nr
Match: KAG6586492.1 (hypothetical protein SDJN03_19225, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.3 bits (656), Expect = 7.2e-65
Identity = 127/132 (96.21%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESV DKHPDLLRPSAR+CSIF+GQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARLCSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN RRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLIIVAVLLL 133
           VILL+IVAVLLL
Sbjct: 121 VILLVIVAVLLL 132

[Close]

BLAST of CmaCh12G013200 vs. NCBI nr
Match: XP_023538492.1 (uncharacterized protein LOC111799252 [Cucurbita pepo subsp. pepo] >XP_023538493.1 uncharacterized protein LOC111799252 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.6 bits (649), Expect = 4.7e-64
Identity = 126/132 (95.45%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESV DKHPDLLRPSARICSIF+GQEKD  DHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDACDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN RRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLIIVAVLLL 133
           VILL+IVAVLLL
Sbjct: 121 VILLVIVAVLLL 132

[Close]

BLAST of CmaCh12G013200 vs. TAIR 10
Match: AT4G26060.1 (Ribosomal protein L18ae family )

HSP 1 Score: 145.6 bits (366), Expect = 2.8e-35
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 8   TVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLP 67
           + +LV+SV DKH  L+RP A+  S      KD     K +YTL+KDV++++ G+YDKPLP
Sbjct: 12  SAELVKSVADKHAGLVRPVAKYYSAV----KDAMVCGKGRYTLVKDVDEVENGVYDKPLP 71

Query: 68  CFGCGIGWFSFLLGFLFPIMWYYATILYFWN-TRRDPRERAGLAASAIAAFACSVILLII 127
           CFGCGIGWFSFLLGF+FP +WYYAT+LYF N  R+DPRERAGLAASAI A   S++LL+I
Sbjct: 72  CFGCGIGWFSFLLGFVFPFLWYYATLLYFGNYYRKDPRERAGLAASAITAMGFSLLLLVI 128

[Close]

BLAST of CmaCh12G013200 vs. TAIR 10
Match: AT5G57060.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 139.0 bits (349), Expect = 2.7e-33
Identity = 69/120 (57.50%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 10  QLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCF 69
           +LV+ + D+H  L++ ++R  S      KD     K +YTL+KDV+D++ G YDKPLPCF
Sbjct: 15  ELVKFIADRHAKLMKQASRHYSAI----KDAMARGKKRYTLVKDVDDMETGAYDKPLPCF 74

Query: 70  GCGIGWFSFLLGFLFPIMWYYATILYFWN-TRRDPRERAGLAASAIAAFACSVILLIIVA 129
           GCGIGWFSFLLGF+FP +WYYA  LYF N  R+DPRERAGLAASAI A   S++LL+I A
Sbjct: 75  GCGIGWFSFLLGFMFPFLWYYAAFLYFGNYYRKDPRERAGLAASAITAMGFSLVLLVIFA 130

[Close]

BLAST of CmaCh12G013200 vs. TAIR 10
Match: AT5G57060.2 (BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-30
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 38  KDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFW 97
           KD     K +YTL+KDV+D++ G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LYF 
Sbjct: 12  KDAMARGKKRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFG 71

Query: 98  N-TRRDPRERAGLAASAIAAFACSVILLIIVA 129
           N  R+DPRERAGLAASAI A   S++LL+I A
Sbjct: 72  NYYRKDPRERAGLAASAITAMGFSLVLLVIFA 103

[Close]

BLAST of CmaCh12G013200 vs. TAIR 10
Match: AT1G54217.2 (Ribosomal protein L18ae family )

HSP 1 Score: 104.4 bits (259), Expect = 7.3e-23
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 39  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFW 98
           D+ +  K KY L++ D ED ++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  
Sbjct: 5   DLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 64

Query: 99  N-TRRDPRERAGLAASAIAAFACSVILLIIVAVLL 132
           +   RDPRER+GLAASAIAA   SV L+I V VL+
Sbjct: 65  SYYHRDPRERSGLAASAIAALIFSVALVITVLVLV 99

[Close]

BLAST of CmaCh12G013200 vs. TAIR 10
Match: AT1G54217.1 (Ribosomal protein L18ae family )

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-22
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 39  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFW 98
           ++ +  K KY L++ D ED ++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  
Sbjct: 4   NLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 63

Query: 99  N-TRRDPRERAGLAASAIAAFACSVILLIIVAVLL 132
           +   RDPRER+GLAASAIAA   SV L+I V VL+
Sbjct: 64  SYYHRDPRERSGLAASAIAALIFSVALVITVLVLV 98

The following BLAST results are available for this feature:

BLAST of CmaCh12G013200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S1	5.6e-04	44.12	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g2...	[more]

BLAST of CmaCh12G013200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HNQ0	1.7e-67	100.00	uncharacterized protein LOC111465349 OS=Cucurbita maxima OX=3661 GN=LOC111465349...	[more]
A0A6J1FC32	2.7e-65	96.21	uncharacterized protein LOC111444050 OS=Cucurbita moschata OX=3662 GN=LOC1114440...	[more]
A0A1S3CAZ9	3.3e-55	82.71	uncharacterized protein LOC103498658 OS=Cucumis melo OX=3656 GN=LOC103498658 PE=...	[more]
A0A5D3CGZ6	3.3e-55	82.71	60S ribosomal protein L18a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1G4J6	7.3e-55	81.34	uncharacterized protein LOC111450686 OS=Cucurbita moschata OX=3662 GN=LOC1114506...	[more]

BLAST of CmaCh12G013200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965444.1	3.5e-67	100.00	uncharacterized protein LOC111465349 [Cucurbita maxima] >XP_022965445.1 uncharac...	[more]
KAG7021350.1	4.2e-65	96.97	hypothetical protein SDJN02_18039 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022937742.1	5.5e-65	96.21	uncharacterized protein LOC111444050 [Cucurbita moschata] >XP_022937743.1 unchar...	[more]
KAG6586492.1	7.2e-65	96.21	hypothetical protein SDJN03_19225, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023538492.1	4.7e-64	95.45	uncharacterized protein LOC111799252 [Cucurbita pepo subsp. pepo] >XP_023538493....	[more]

BLAST of CmaCh12G013200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26060.1	2.8e-35	61.16	Ribosomal protein L18ae family	[more]
AT5G57060.1	2.7e-33	57.50	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-...	[more]
AT5G57060.2	1.6e-30	67.39	BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR...	[more]
AT1G54217.2	7.3e-23	60.00	Ribosomal protein L18ae family	[more]
AT1G54217.1	2.8e-22	58.95	Ribosomal protein L18ae family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46666:SF2	60S RIBOSOMAL L18A-LIKE PROTEIN	coord: 36..131
None	No IPR available	PANTHER	PTHR46666	60S RIBOSOMAL L18A-LIKE PROTEIN	coord: 36..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G013200.1	CmaCh12G013200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome